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Rosetta 3.5
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Rosetta 3.5
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#include <WorkUnit_BatchRelax.hh>
Public Member Functions | |
| WorkUnit_BatchRelax () | |
| WorkUnit_BatchRelax. More... | |
| ~WorkUnit_BatchRelax () | |
| virtual void | run () |
| This Work unit doesnt do anything - its just keeps the structures. More... | |
| virtual void | pre_process () |
| virtual void | post_process () |
| virtual protocols::wum::WorkUnitBaseOP | clone () const |
| void | set_native_pose (core::pose::PoseCOP native_pose) |
 Public Member Functions inherited from protocols::wum::WorkUnit_SilentStructStore | |
| WorkUnit_SilentStructStore () | |
| virtual | ~WorkUnit_SilentStructStore () |
| virtual void | serialize () |
| write decoys into serial data store overwritinge whatever was there before. It basically syncs the silent struct store with the derial data More... | |
| virtual void | deserialize () |
| Make ready for working. More... | |
| const protocols::wum::SilentStructStore & | decoys () const |
| Accessor for decoy store. More... | |
| protocols::wum::SilentStructStore & | decoys () |
| Accessor for decoy store. More... | |
| Public Member Functions inherited from protocols::wum::WorkUnitBase | |
| WorkUnitBase () | |
| virtual | ~WorkUnitBase () |
| virtual void | clear_serial_data () |
| Remove all data, make sure that the memory is also cleared, hence the cals to reserve. More... | |
| void | print (std::ostream &out, bool verbose=false) const |
| Print header information to the stream, single line by default or verbose if verbose is set to true. More... | |
| core::Size | id () |
| Accessor to the ID of the WorkUnit. More... | |
| core::Size | extra_data_1 () |
| Accessor to the extra_data_1 and 3 field of the header. More... | |
| core::Size | extra_data_3 () |
| void | add_blacklist (int mpi_rank) |
| Adds to the blacklist. More... | |
| void | clear_blacklist () |
| Erases the blacklist. More... | |
| bool | in_blacklist (int mpi_rank) |
| Finds in blacklist, true if is, false if it isn't. More... | |
| core::Size | get_run_time () |
| Returns the differrence between unix start and stop times. More... | |
| std::string | get_wu_type () const |
| Accessor to header structure, return the WorkUnit Type. More... | |
| void | set_wu_type (const std::string &text) |
| Accessor to header structure, sets the WorkUnit Type. More... | |
| std::string | get_options () const |
| Optain the options string from the header. More... | |
| virtual core::Size | mem_footprint () const |
| Return the memory usage of this WorkUnit. More... | |
| core::Size | last_received_from () |
Protected Attributes | |
| core::pose::PoseCOP | native_pose_ |
| core::scoring::ScoreFunctionOP | scorefxn_ |
Additional Inherited Members | |
| Protected Member Functions inherited from protocols::wum::WorkUnitBase | |
| virtual void | create_unique_id () |
| Make a unique number out of Processor Number and unix timestamp ? More... | |
| std::string & | serial_data () |
| Accessor to the serial data field. More... | |
| const std::string & | serial_data () const |
| Accessor to the serial data field. More... | |
| void | set_options (const std::string &text) |
| Accesor to the "options" text field. More... | |
| void | set_run_start () |
| Set the unixtime of the start of the execution of this WorkUnit. More... | |
| void | set_run_stop () |
| Set the unixtime of the stop of the execution of this WorkUnit. More... | |
| protocols::relax::WorkUnit_BatchRelax::WorkUnit_BatchRelax | ( | ) |
Referenced by clone().
| protocols::relax::WorkUnit_BatchRelax::~WorkUnit_BatchRelax | ( | ) |
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virtual |
Reimplemented from protocols::wum::WorkUnit_SilentStructStore.
Reimplemented in protocols::relax::WorkUnit_BatchRelax_and_PostRescore.
References WorkUnit_BatchRelax().
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virtual |
Reimplemented in protocols::relax::WorkUnit_BatchRelax_and_PostRescore.
References protocols::relax::TR().
Referenced by run().
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virtual |
Reimplemented in protocols::relax::WorkUnit_BatchRelax_and_PostRescore.
References protocols::relax::TR().
Referenced by run().
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virtual |
This Work unit doesnt do anything - its just keeps the structures.
Reimplemented from protocols::wum::WorkUnit_SilentStructStore.
References core::scoring::constraints::add_fa_constraints_from_cmdline_to_scorefxn(), protocols::relax::FastRelax::batch_apply(), protocols::wum::WorkUnit_SilentStructStore::decoys(), core::scoring::constraints::get_cst_fa_file_option(), core::scoring::constraints::ConstraintIO::get_instance(), protocols::wum::SilentStructStore::get_struct(), core::scoring::getScoreFunction(), native_pose_, post_process(), pre_process(), core::scoring::constraints::ConstraintIO::read_constraints(), scorefxn_, protocols::moves::Mover::set_native_pose(), protocols::wum::SilentStructStore::size(), and protocols::relax::TR().
| void protocols::relax::WorkUnit_BatchRelax::set_native_pose | ( | core::pose::PoseCOP | native_pose) |
References native_pose_.
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protected |
Referenced by run(), and set_native_pose().
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protected |
Referenced by protocols::relax::WorkUnit_BatchRelax_and_PostRescore::rescore_all_decoys(), and run().
1.8.4