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protocols::simple_moves::sidechain_moves::SidechainMCMover Member List

This is the complete list of members for protocols::simple_moves::sidechain_moves::SidechainMCMover, including all inherited members.

accepts_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
apply(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMCMovervirtual
protocols::canonical_sampling::ThermodynamicMover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
best_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
best_energy_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
change_chi_without_replacing_residue() const protocols::simple_moves::sidechain_moves::SidechainMover
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::simple_moves::sidechain_moves::SidechainMCMovervirtual
create()protocols::moves::Movervirtual
current_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
current_energy_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
current_ntrial_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
dof_id_ranges(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMovervirtual
Filters_map typedefprotocols::moves::Mover
finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover)protocols::canonical_sampling::ThermodynamicMovervirtual
fresh_instance() const protocols::simple_moves::sidechain_moves::SidechainMCMovervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::simple_moves::sidechain_moves::SidechainMCMovervirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
idealize_sidechains(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMover
ig_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
inherit_scorefxn_temperature() const protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
inherit_scorefxn_temperature_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
init_task(core::pose::Pose const &pose)protocols::simple_moves::sidechain_moves::SidechainMover
initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle)protocols::simple_moves::sidechain_moves::SidechainMCMovervirtual
is_multi_trial()protocols::simple_moves::sidechain_moves::SidechainMCMoverinlinevirtual
last_inner_score_temperature_delta()protocols::simple_moves::sidechain_moves::SidechainMCMoverinlinevirtual
last_mutation() const protocols::simple_moves::sidechain_moves::SidechainMover
last_nchi() const protocols::simple_moves::sidechain_moves::SidechainMover
last_proposal_density_ratio()protocols::simple_moves::sidechain_moves::SidechainMCMoverinlinevirtual
last_uniform() const protocols::simple_moves::sidechain_moves::SidechainMover
last_withinrot() const protocols::simple_moves::sidechain_moves::SidechainMover
make_move(core::conformation::ResidueOP res)protocols::simple_moves::sidechain_moves::SidechainMover
metropolis_hastings_mover()protocols::simple_moves::sidechain_moves::SidechainMCMoverinlinevirtual
metropolis_hastings_mover_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
next_resnum() const protocols::simple_moves::sidechain_moves::SidechainMover
next_resnum(core::Size resnum)protocols::simple_moves::sidechain_moves::SidechainMover
ntrials()protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
ntrials_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover)protocols::canonical_sampling::ThermodynamicMovervirtual
operator=(Mover const &other)protocols::moves::Mover
packed_residues() const protocols::simple_moves::sidechain_moves::SidechainMover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)protocols::simple_moves::sidechain_moves::SidechainMCMovervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
pass_metropolis(core::Real delta_energy, core::Real last_proposal_density_ratio)protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
perturb_chi(numeric::random::RandomGenerator Rand, core::Real max_deviation, utility::vector1< core::Real > &current_chi, utility::vector1< core::Real > &new_chi)protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
preserve_detailed_balance() const protocols::simple_moves::sidechain_moves::SidechainMovervirtual
previous_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
prob_random_pert_current() const protocols::simple_moves::sidechain_moves::SidechainMover
prob_uniform() const protocols::simple_moves::sidechain_moves::SidechainMover
prob_withinrot() const protocols::simple_moves::sidechain_moves::SidechainMover
proposal_density(core::conformation::Residue const &proposed_residue, core::Size const proposed_resnum, core::chemical::ResidueType const &initial_residue_type, utility::vector1< core::Real > const &initial_chi_angles) const protocols::simple_moves::sidechain_moves::SidechainMover
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
residue_packed() const protocols::simple_moves::sidechain_moves::SidechainMover
rotamer_library() const protocols::simple_moves::sidechain_moves::SidechainMover
sampling_temperature()protocols::simple_moves::sidechain_moves::SidechainMoverinline
sampling_temperature_protocols::simple_moves::sidechain_moves::SidechainMoverprotected
save_state(SerializableState &state)protocols::moves::Movervirtual
score_post_apply_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
score_pre_apply_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
scorefunction()protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
set_change_chi_without_replacing_residue(bool const change_chi_without_replacing_residue)protocols::simple_moves::sidechain_moves::SidechainMover
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_inherit_scorefxn_temperature(bool inherit_scorefxn_temperature)protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_metropolis_hastings_mover(protocols::canonical_sampling::MetropolisHastingsMoverAP metropolis_hastings_mover)protocols::simple_moves::sidechain_moves::SidechainMCMoverinlinevirtual
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_ntrials(core::Size ntrial)protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
set_preserve_detailed_balance(bool preserve_detailed_balance)protocols::simple_moves::sidechain_moves::SidechainMovervirtual
set_prob_random_pert_current(core::Real prob_pert)protocols::simple_moves::sidechain_moves::SidechainMover
set_prob_uniform(core::Real prob_uniform)protocols::simple_moves::sidechain_moves::SidechainMover
set_prob_withinrot(core::Real prob_withinrot)protocols::simple_moves::sidechain_moves::SidechainMover
set_sampling_temperature(core::Real temp)protocols::simple_moves::sidechain_moves::SidechainMoverinline
set_scorefunction(core::scoring::ScoreFunction const &sfxn)protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
set_task(core::pack::task::PackerTaskCOP task)protocols::simple_moves::sidechain_moves::SidechainMover
set_task_factory(core::pack::task::TaskFactoryCOP task_factory)protocols::simple_moves::sidechain_moves::SidechainMover
set_temperature(core::Real temp)protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
setup(core::scoring::ScoreFunctionCOP sfxn)protocols::simple_moves::sidechain_moves::SidechainMCMover
sfxn_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
show_counters(std::ostream &out)protocols::simple_moves::sidechain_moves::SidechainMCMover
SidechainMCMover()protocols::simple_moves::sidechain_moves::SidechainMCMover
SidechainMCMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library)protocols::simple_moves::sidechain_moves::SidechainMCMover
SidechainMover()protocols::simple_moves::sidechain_moves::SidechainMover
SidechainMover(core::pack::dunbrack::RotamerLibrary const &rotamer_library)protocols::simple_moves::sidechain_moves::SidechainMover
SidechainMover(SidechainMover const &mover)protocols::simple_moves::sidechain_moves::SidechainMover
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
task() const protocols::simple_moves::sidechain_moves::SidechainMover
task_factory() const protocols::simple_moves::sidechain_moves::SidechainMover
task_initialized()protocols::simple_moves::sidechain_moves::SidechainMover
temperature()protocols::simple_moves::sidechain_moves::SidechainMCMoverinline
temperature0_protocols::simple_moves::sidechain_moves::SidechainMoverprotected
temperature_protocols::simple_moves::sidechain_moves::SidechainMCMoverprivate
test_move(core::pose::Pose &)protocols::simple_moves::sidechain_moves::SidechainMovervirtual
ThermodynamicMover()protocols::canonical_sampling::ThermodynamicMover
torsion_id_ranges(core::pose::Pose &pose)protocols::simple_moves::sidechain_moves::SidechainMovervirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
update_type()protocols::simple_moves::sidechain_moves::SidechainMover
~Mover()protocols::moves::Movervirtual
~SidechainMCMover()protocols::simple_moves::sidechain_moves::SidechainMCMover
~SidechainMover()protocols::simple_moves::sidechain_moves::SidechainMover
~ThermodynamicMover()protocols::canonical_sampling::ThermodynamicMovervirtual