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protocols::protein_interface_design::filters::DesignableResiduesFilter Class Reference

#include <DesignableResiduesFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::DesignableResiduesFilter:
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Collaboration diagram for protocols::protein_interface_design::filters::DesignableResiduesFilter:
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Public Member Functions

 DesignableResiduesFilter ()
 default ctor More...
 
virtual bool apply (core::pose::Pose const &pose) const
 Constructor with a single target residue. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
virtual
protocols::filters::FilterOP 
clone () const
 
virtual
protocols::filters::FilterOP 
fresh_instance () const
 
core::Size compute (core::pose::Pose const &pose) const
 
virtual ~DesignableResiduesFilter ()
 
core::pack::task::TaskFactoryOP task_factory () const
 
void task_factory (core::pack::task::TaskFactoryOP task_factory)
 
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
core::Size lower_threshold () const
 
core::Size upper_threshold () const
 
bool packable () const
 
bool designable () const
 
void lower_threshold (core::Size const l)
 
void upper_threshold (core::Size const u)
 
void packable (bool const p)
 
void designable (bool const d)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual std::string name () const
 

Private Types

typedef protocols::filters::Filter parent
 

Private Attributes

core::pack::task::TaskFactoryOP task_factory_
 
core::Size lower_threshold_
 
core::Size upper_threshold_
 
bool packable_
 
bool designable_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::DesignableResiduesFilter::DesignableResiduesFilter ( )

default ctor

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::DesignableResiduesFilter::~DesignableResiduesFilter ( )
virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::apply ( core::pose::Pose const &  pose) const
virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), lower_threshold_, protocols::protein_interface_design::filters::TR(), and upper_threshold_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::DesignableResiduesFilter::clone ( ) const
virtual
core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::compute ( core::pose::Pose const &  pose) const
bool protocols::protein_interface_design::filters::DesignableResiduesFilter::designable ( ) const

References designable_.

Referenced by compute(), parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::designable ( bool const  d)

References designable_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::DesignableResiduesFilter::fresh_instance ( ) const
virtual
core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold ( ) const

References lower_threshold_.

Referenced by parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold ( core::Size const  l)

References lower_threshold_.

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::packable ( ) const

References packable_.

Referenced by compute(), parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::packable ( bool const  p)

References packable_.

void protocols::protein_interface_design::filters::DesignableResiduesFilter::parse_def ( utility::lua::LuaObject const &  def,
utility::lua::LuaObject const &  score_fxns,
utility::lua::LuaObject const &  tasks 
)
virtual
void protocols::protein_interface_design::filters::DesignableResiduesFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
void protocols::protein_interface_design::filters::DesignableResiduesFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::DesignableResiduesFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory ( ) const
void protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory ( core::pack::task::TaskFactoryOP  task_factory)

References task_factory(), and task_factory_.

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold ( ) const

References upper_threshold_.

Referenced by parse_def(), and parse_my_tag().

void protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold ( core::Size const  u)

References upper_threshold_.

Member Data Documentation

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::designable_
private

Referenced by designable().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::lower_threshold_
private

Referenced by apply(), and lower_threshold().

bool protocols::protein_interface_design::filters::DesignableResiduesFilter::packable_
private

Referenced by packable().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::DesignableResiduesFilter::task_factory_
private

Referenced by task_factory().

core::Size protocols::protein_interface_design::filters::DesignableResiduesFilter::upper_threshold_
private

Referenced by apply(), and upper_threshold().


The documentation for this class was generated from the following files: