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protocols::frag_picker::scores::TalosSSSimilarity Member List

This is the complete list of members for protocols::frag_picker::scores::TalosSSSimilarity, including all inherited members.

cache_protocols::frag_picker::scores::TalosSSSimilarityprotected
cached_score(FragmentCandidateOP f, FragmentScoreMapOP empty_map)protocols::frag_picker::scores::TalosSSSimilarityvirtual
cached_scores_id_protocols::frag_picker::scores::TalosSSSimilarityprivate
CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::CachingScoringMethodinline
clean_up()protocols::frag_picker::scores::TalosSSSimilarityinlinevirtual
do_caching(VallChunkOP)protocols::frag_picker::scores::TalosSSSimilarityvirtual
do_caching_simple(VallChunkOP)protocols::frag_picker::scores::TalosSSSimilarity
E_mult_protocols::frag_picker::scores::TalosSSSimilarityprivate
FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::FragmentScoringMethodinline
get_id()protocols::frag_picker::scores::FragmentScoringMethodinline
get_min_allowed_score()protocols::frag_picker::scores::FragmentScoringMethodinline
get_prediction_name()protocols::frag_picker::scores::TalosSSSimilarityinline
get_priority()protocols::frag_picker::scores::FragmentScoringMethodinline
get_score_name()protocols::frag_picker::scores::FragmentScoringMethodinline
get_secondary_prediction()protocols::frag_picker::scores::TalosSSSimilarityinline
get_use_lowest()protocols::frag_picker::scores::FragmentScoringMethodinline
H_mult_protocols::frag_picker::scores::TalosSSSimilarityprivate
id_protocols::frag_picker::scores::FragmentScoringMethodprotected
L_mult_protocols::frag_picker::scores::TalosSSSimilarityprivate
lowest_acceptable_value_protocols::frag_picker::scores::FragmentScoringMethodprotected
name_protocols::frag_picker::scores::FragmentScoringMethodprotected
prediction_name_protocols::frag_picker::scores::TalosSSSimilarityprivate
priority_protocols::frag_picker::scores::FragmentScoringMethodprotected
query_len_protocols::frag_picker::scores::TalosSSSimilarityprivate
query_ss_protocols::frag_picker::scores::TalosSSSimilarityprivate
raw_probs_protocols::frag_picker::scores::TalosSSSimilarityprivate
score(FragmentCandidateOP, FragmentScoreMapOP)protocols::frag_picker::scores::TalosSSSimilarityvirtual
scores_protocols::frag_picker::scores::TalosSSSimilarityprotected
set_id(Size id)protocols::frag_picker::scores::FragmentScoringMethodinline
set_min_allowed_score(Real lowest_acceptable_value)protocols::frag_picker::scores::FragmentScoringMethodinline
TalosSSSimilarity(Size priority, Real lowest_acceptable_value, bool use_lowest, core::fragment::SecondaryStructureOP query_prediction, std::string prediction_name, Size sequence_length, utility::vector1< Size > &frag_sizes, Size longest_vall_chunk)protocols::frag_picker::scores::TalosSSSimilarity
use_lowest_protocols::frag_picker::scores::FragmentScoringMethodprotected
~TalosSSSimilarity()protocols::frag_picker::scores::TalosSSSimilarityinline