Rosetta 3.5
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
core::kinematics::tree::JumpAtom Member List

This is the complete list of members for core::kinematics::tree::JumpAtom, including all inherited members.

abort_bad_call() const core::kinematics::tree::Atom_protected
append_atom(AtomOP)core::kinematics::tree::Atom_virtual
Atom()core::kinematics::tree::Atominlineprotected
Atom(Atom const &)core::kinematics::tree::Atominlineprotected
Atom_()core::kinematics::tree::Atom_inlineprotected
Atom_(Atom_ const &atom)core::kinematics::tree::Atom_inlineprotected
atom_id() const core::kinematics::tree::Atom_inlinevirtual
atom_id_core::kinematics::tree::Atom_protected
atom_is_on_path_from_root(AtomCOP atm) const core::kinematics::tree::Atom_protectedvirtual
AtomID typedefcore::kinematics::tree::Atom
AtomID_Mask typedefcore::kinematics::tree::Atom
Atoms typedefcore::kinematics::tree::Atom
atoms_core::kinematics::tree::Atom_protected
atoms_begin() const core::kinematics::tree::Atom_inlinevirtual
atoms_begin()core::kinematics::tree::Atom_inlinevirtual
Atoms_ConstIterator typedefcore::kinematics::tree::Atom
atoms_end() const core::kinematics::tree::Atom_inlinevirtual
atoms_end()core::kinematics::tree::Atom_inlinevirtual
Atoms_Iterator typedefcore::kinematics::tree::Atom
child(Size const k) const core::kinematics::tree::Atom_virtual
child(Size const k)core::kinematics::tree::Atom_virtual
child_index(AtomCOP child) const core::kinematics::tree::Atom_virtual
clone(AtomAP parent_in, AtomPointer2D &atom_pointer) const core::kinematics::tree::JumpAtomvirtual
copy_coords(Atom const &src)core::kinematics::tree::JumpAtomvirtual
delete_atom(AtomOP)core::kinematics::tree::Atom_virtual
dfs(AtomDOFChangeSet &changeset, ResidueCoordinateChangeList &res_change_list, Size const start_atom_index) const core::kinematics::tree::JumpAtomvirtual
difference_type typedefcore::kinematics::tree::Atom
dihedral_between_bonded_children(AtomCOP child1, AtomCOP child2) const core::kinematics::tree::Atom_virtual
distance(Atom const &atom) const core::kinematics::tree::Atom_inlinevirtual
distance_squared(Atom const &atom) const core::kinematics::tree::Atom_inlinevirtual
dof(DOF_Type const type) const core::kinematics::tree::JumpAtomvirtual
DOF_ID typedefcore::kinematics::tree::Atom
DOF_ID_Mask typedefcore::kinematics::tree::Atom
dof_refold_index() const core::kinematics::tree::Atom_inlineprotected
DOF_Type typedefcore::kinematics::tree::Atom
downstream(AtomCOP atom1) const core::kinematics::tree::Atom_virtual
get_dof_axis_and_end_pos(Vector &axis, Position &end_pos, DOF_Type const type) const core::kinematics::tree::JumpAtomvirtual
get_input_stub() const core::kinematics::tree::Atom_virtual
get_nonjump_atom(Size const i) const core::kinematics::tree::Atom_virtual
get_path_from_root(utility::vector1< AtomCOP > &path) const core::kinematics::tree::Atom_protectedvirtual
get_stub() const core::kinematics::tree::Atom_virtual
id() const core::kinematics::tree::Atom_inlinevirtual
id(AtomID const &id_in)core::kinematics::tree::Atom_inlinevirtual
input_stub_atom0() const core::kinematics::tree::Atom_inlinevirtual
input_stub_atom0_id() const core::kinematics::tree::Atom_inlinevirtual
input_stub_atom1() const core::kinematics::tree::Atom_inlinevirtual
input_stub_atom1_id() const core::kinematics::tree::Atom_inlinevirtual
input_stub_atom2() const core::kinematics::tree::Atom_inlinevirtual
input_stub_atom2_id() const core::kinematics::tree::Atom_inlinevirtual
input_stub_atom3() const core::kinematics::tree::Atom_inlinevirtual
input_stub_atom3_id() const core::kinematics::tree::Atom_inlinevirtual
insert_atom(AtomOP)core::kinematics::tree::Atom_virtual
insert_atom(AtomOP, int const )core::kinematics::tree::Atom_virtual
is_jump() const core::kinematics::tree::JumpAtominlinevirtual
iterator_category typedefcore::kinematics::tree::Atom
jump() const core::kinematics::tree::JumpAtomvirtual
jump(Jump const &jump_in)core::kinematics::tree::JumpAtomvirtual
jump(Jump const &jump_in, AtomDOFChangeSet &changeset)core::kinematics::tree::JumpAtomvirtual
jump_core::kinematics::tree::JumpAtomprivate
keep_1st_child_pos() const core::kinematics::tree::JumpAtominlinevirtual
keep_dof_fixed(DOF_Type const type) const core::kinematics::tree::JumpAtomvirtual
Matrix typedefcore::kinematics::tree::Atom
n_atom() const core::kinematics::tree::Atom_inlinevirtual
n_children() const core::kinematics::tree::Atom_virtual
n_nonjump_children() const core::kinematics::tree::Atom_inlinevirtual
next_child(AtomCOP child)core::kinematics::tree::Atom_virtual
nonjump_atoms_begin() const core::kinematics::tree::Atom_protectedvirtual
nonjump_atoms_begin()core::kinematics::tree::Atom_protectedvirtual
note_dof_change(AtomDOFChangeSet &changset)core::kinematics::tree::Atom_protected
note_xyz_uptodate()core::kinematics::tree::Atom_inlineprotected
operator=(Atom_ const &atom)core::kinematics::tree::Atom_inlineprotected
core::kinematics::tree::Atom::operator=(Atom const &)core::kinematics::tree::Atominlineprotected
parent() const core::kinematics::tree::Atom_inlinevirtual
parent(AtomAP parent_in)core::kinematics::tree::Atom_inlinevirtual
parent()core::kinematics::tree::Atom_inlinevirtual
parent_core::kinematics::tree::Atom_protected
Position typedefcore::kinematics::tree::Atom
position() const core::kinematics::tree::Atom_inlinevirtual
position(Position const &position_a)core::kinematics::tree::Atom_inlinevirtual
position_core::kinematics::tree::Atom_protected
previous_child(AtomCOP child) const core::kinematics::tree::Atom_virtual
previous_sibling() const core::kinematics::tree::Atom_virtual
replace_atom(AtomOP const old_atom, AtomOP const new_atom)core::kinematics::tree::Atom_virtual
set_dof(DOF_Type const type, Real const value)core::kinematics::tree::JumpAtomvirtual
set_dof(DOF_Type const type, core::Real const value, AtomDOFChangeSet &changeset)core::kinematics::tree::JumpAtomvirtual
set_weak_ptr_to_self(AtomAP weak_ptr)core::kinematics::tree::Atom_virtual
setup_min_map(DOF_ID &last_torsion, DOF_ID_Mask const &allow_move, MinimizerMapBase &min_map) const core::kinematics::tree::JumpAtomvirtual
show() const core::kinematics::tree::Atom_virtual
show(int const &n_level) const core::kinematics::tree::Atom_virtual
stub_atom1() const core::kinematics::tree::JumpAtominlinevirtual
stub_atom1_id() const core::kinematics::tree::Atom_inlinevirtual
stub_atom2() const core::kinematics::tree::JumpAtominlinevirtual
stub_atom2_id() const core::kinematics::tree::Atom_inlinevirtual
stub_atom3() const core::kinematics::tree::JumpAtominlinevirtual
stub_atom3_id() const core::kinematics::tree::Atom_inlinevirtual
stub_defined() const core::kinematics::tree::Atom_virtual
Super typedefcore::kinematics::tree::JumpAtomprivate
this_weak_ptr()core::kinematics::tree::Atom_inlineprotected
this_weak_ptr() const core::kinematics::tree::Atom_inlineprotected
this_weak_ptr_core::kinematics::tree::Atom_protected
transform_Ax_plus_b_recursive(Matrix const &A, Vector const &b, ResidueCoordinateChangeList &res_change_list)core::kinematics::tree::Atom_protectedvirtual
update_child_torsions(AtomOP const child)core::kinematics::tree::Atom_protectedvirtual
update_domain_map(int &current_color, int &biggest_color, DomainMap &domain_map, AtomID_Mask const &dof_moved, AtomID_Mask const &atom_moved) const core::kinematics::tree::Atom_virtual
update_internal_coords(Stub &stub, bool const recursive=true)core::kinematics::tree::JumpAtomvirtual
core::kinematics::tree::Atom_::update_internal_coords(bool const recursive)core::kinematics::tree::Atom_virtual
update_stub(Stub &) const core::kinematics::tree::JumpAtominlinevirtual
update_xyz_coords()core::kinematics::tree::JumpAtomvirtual
update_xyz_coords(Stub &stub)core::kinematics::tree::JumpAtomvirtual
x() const core::kinematics::tree::Atom_inlinevirtual
xyz() const core::kinematics::tree::Atom_inlinevirtual
xyz(Position const &position_a)core::kinematics::tree::Atom_inlinevirtual
y() const core::kinematics::tree::Atom_inlinevirtual
z() const core::kinematics::tree::Atom_inlinevirtual
~Atom()core::kinematics::tree::Atominlinevirtual
~Atom_()core::kinematics::tree::Atom_inlinevirtual