Rosetta 3.5
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task_operations Directory Reference
Directory dependency graph for task_operations:
src/protocols/toolbox/task_operations

Files

file  DesignAroundOperation.cc
 
file  DesignAroundOperation.fwd.hh
 
file  DesignAroundOperation.hh
 TaskOperation class that restricts a chain to repacking.
 
file  DesignAroundOperationCreator.hh
 
file  InterfaceTaskOperation.cc
 Base class for TaskOperations that will work with docking to define an interface.
 
file  InterfaceTaskOperation.fwd.hh
 
file  InterfaceTaskOperation.hh
 Base class for TaskOperations that will work with docking to define an interface.
 
file  JointSequenceOperation.cc
 set designable residues to those observed in a set of structures
 
file  JointSequenceOperation.fwd.hh
 
file  JointSequenceOperation.hh
 set every position to be designable to residues observed in a set of structures
 
file  JointSequenceOperationCreator.hh
 
file  LayerOperations.cc
 
file  LayerOperations.hh
 
file  LayerOperationsCreator.hh
 
file  LimitAromaChi2Operation.cc
 eliminate aromatic rotamers, of which chi2 are around 0, 180 degree. Chi2=0, 180 rotamers of aromatic residues ( PHE, TYR, HIS ) are not observed in nature very much, however Rosetta really like them. This is really pathology. For design purpose, we don't need them actually.
 
file  LimitAromaChi2Operation.fwd.hh
 
file  LimitAromaChi2Operation.hh
 rotamer set operation forward declaration
 
file  LimitAromaChi2OperationCreator.hh
 
file  ModifyAnnealer.cc
 Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
 
file  ModifyAnnealer.fwd.hh
 Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
 
file  ModifyAnnealer.hh
 Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
 
file  ModifyAnnealerCreator.hh
 
file  PreventChainFromRepackingOperation.cc
 
file  PreventChainFromRepackingOperation.fwd.hh
 
file  PreventChainFromRepackingOperation.hh
 TaskOperation class that restricts a chain to repacking.
 
file  PreventChainFromRepackingOperationCreator.hh
 
file  PreventResiduesFromRepackingOperation.cc
 
file  PreventResiduesFromRepackingOperation.fwd.hh
 
file  PreventResiduesFromRepackingOperation.hh
 TaskOperation class that prevents a vector of residues indices from repacking parsed as a string that is comma delimited ",".
 
file  PreventResiduesFromRepackingOperationCreator.hh
 
file  ProteinCoreResFilter.cc
 
file  ProteinCoreResFilter.hh
 
file  ProteinCoreResFilterCreator.hh
 
file  ProteinInterfaceDesignOperation.cc
 
file  ProteinInterfaceDesignOperation.fwd.hh
 
file  ProteinInterfaceDesignOperation.hh
 TaskOperation class that restricts a chain to repacking.
 
file  ProteinInterfaceDesignOperationCreator.hh
 
file  ReadResfileFromDB.cc
 
file  ReadResfileFromDB.fwd.hh
 Forward declaration of the ReadResfileFromDB class.
 
file  ReadResfileFromDB.hh
 read a refile indexed by the input structure tag from a supplied relational database
 
file  ReadResfileFromDBCreator.hh
 
file  RestrictByCalculatorsOperation.cc
 A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
 
file  RestrictByCalculatorsOperation.fwd.hh
 A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
 
file  RestrictByCalculatorsOperation.hh
 A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
 
file  RestrictByCalculatorsOperationCreator.hh
 
file  RestrictChainToRepackingOperation.cc
 
file  RestrictChainToRepackingOperation.fwd.hh
 
file  RestrictChainToRepackingOperation.hh
 TaskOperation class that restricts a chain to repacking.
 
file  RestrictChainToRepackingOperationCreator.hh
 
file  RestrictIdentitiesAtAlignedPositions.cc
 
file  RestrictIdentitiesAtAlignedPositions.fwd.hh
 
file  RestrictIdentitiesAtAlignedPositions.hh
 
file  RestrictIdentitiesAtAlignedPositionsCreator.hh
 
file  RestrictInterGroupVectorOperation.cc
 
file  RestrictInterGroupVectorOperation.fwd.hh
 
file  RestrictInterGroupVectorOperation.hh
 restricts design to only those residues between two groups of structures
 
file  RestrictInterGroupVectorOperationCreator.hh
 
file  RestrictNativeResiduesOperation.cc
 Restrict every residue in the current pose that is native to repacking. ie, only allow mutated positions to be designed.
 
file  RestrictNativeResiduesOperation.fwd.hh
 
file  RestrictNativeResiduesOperation.hh
 Restrict every residue in the current pose that is native to repacking. ie, only allow mutated positions to be designed.
 
file  RestrictNativeResiduesOperationCreator.hh
 
file  RestrictNonSurfaceToRepackingOperation.cc
 
file  RestrictNonSurfaceToRepackingOperation.fwd.hh
 
file  RestrictNonSurfaceToRepackingOperation.hh
 
file  RestrictNonSurfaceToRepackingOperationCreator.hh
 
file  RestrictOperationsBase.cc
 Base class for PoseMetricCalculator-using TaskOperations.
 
file  RestrictOperationsBase.fwd.hh
 Base class for PoseMetricCalculator-using TaskOperations.
 
file  RestrictOperationsBase.hh
 Base class for PoseMetricCalculator-using TaskOperations.
 
file  RestrictResiduesToRepackingOperation.cc
 
file  RestrictResiduesToRepackingOperation.fwd.hh
 
file  RestrictResiduesToRepackingOperation.hh
 TaskOperation class that restricts a vector of Size defined residues to repacking when parsed, it takes in a string and splits by ",".
 
file  RestrictResiduesToRepackingOperationCreator.hh
 
file  RestrictToAlignedSegments.cc
 
file  RestrictToAlignedSegments.fwd.hh
 
file  RestrictToAlignedSegments.hh
 
file  RestrictToAlignedSegmentsCreator.hh
 
file  RestrictToCDRH3Loop.cc
 
file  RestrictToCDRH3Loop.fwd.hh
 Forward declaration of the RestrictToCDRH3Loop class.
 
file  RestrictToCDRH3Loop.hh
 This class allows the selection for packing of the Antibody CDR-H3 loop by taking advantage of the PDB numbering schemes that are commonly used for Antibodies.
 
file  RestrictToCDRH3LoopCreator.hh
 
file  RestrictToInterface.cc
 
file  RestrictToInterface.fwd.hh
 
file  RestrictToInterface.hh
 
file  RestrictToInterfaceCreator.hh
 
file  RestrictToInterfaceOperation.cc
 TaskOperation class that finds an interface and leaves it mobile in the PackerTask.
 
file  RestrictToInterfaceOperation.fwd.hh
 Forward declaration of a TaskOperation class that finds an interface leaves it mobile in the PackerTask.
 
file  RestrictToInterfaceOperation.hh
 TaskOperation class that finds an interface and makes it mobile in the PackerTask.
 
file  RestrictToInterfaceOperationCreator.hh
 
file  RestrictToInterfaceVectorOperation.cc
 TaskOperation class that finds an interface based on: core/pack/task/operation/util/interface_vector_calculate.hh and leaves it mobile in the PackerTask.
 
file  RestrictToInterfaceVectorOperation.fwd.hh
 Forward declaration of a TaskOperation class that finds an interface leaves it mobile in the PackerTask.
 
file  RestrictToInterfaceVectorOperation.hh
 TaskOperation class that finds an interface based on InterfaceVectorDefinition and leaves it mobile in the PackerTask. Serves mostly to wrap InterfaceVectorDefinition into a TaskOperation. see src/core/pack/task/operation/util/interface_vector_calculate.hh.
 
file  RestrictToInterfaceVectorOperationCreator.hh
 
file  RestrictToLoopsAndNeighbors.cc
 
file  RestrictToLoopsAndNeighbors.fwd.hh
 Forward declaration of the RestrictToLoopsAndNeighbors class.
 
file  RestrictToLoopsAndNeighbors.hh
 This class allows the selection for packing (and possibly design) of residues contained in a Loops object as well as the neighbors within a specified cutoff distance, with the default and maximum cutoff at 10.0 A.
 
file  RestrictToLoopsAndNeighborsCreator.hh
 Creator class for the RestrictToLoopsAndNeighbors TaskOperation.
 
file  RestrictToNeighborhoodOperation.cc
 TaskOperation class that finds a neighborhood and leaves it mobile in the PackerTask.
 
file  RestrictToNeighborhoodOperation.fwd.hh
 Forward declaration of a TaskOperation class that finds a neighborhood; leaves it mobile in the PackerTask.
 
file  RestrictToNeighborhoodOperation.hh
 TaskOperation class that finds a neighborhood and makes it mobile in the PackerTask.
 
file  RestrictToNeighborhoodOperationCreator.hh
 
file  RestrictToTerminiOperation.cc
 
file  RestrictToTerminiOperation.fwd.hh
 Restrict to packing only the residues at either or both termini.
 
file  RestrictToTerminiOperation.hh
 
file  RestrictToTerminiOperationCreator.hh
 
file  SelectBySASAOperation.cc
 
file  SelectBySASAOperation.fwd.hh
 
file  SelectBySASAOperation.hh
 
file  SelectBySASAOperationCreator.hh
 
file  SeqprofConsensusOperation.cc
 set designable residues to those observed in sequence profile
 
file  SeqprofConsensusOperation.fwd.hh
 
file  SeqprofConsensusOperation.hh
 
file  SeqprofConsensusOperationCreator.hh
 
file  SetIGTypeOperation.cc
 Task operation to set interaction graph type (linmem, lazy or double lazy)
 
file  SetIGTypeOperation.fwd.hh
 Task operation to set Interaction graph Type.
 
file  SetIGTypeOperation.hh
 Task operation to set interaction graph type (linear memory, lazy or double lazy)
 
file  SetIGTypeOperationCreator.hh
 
file  ThreadSequenceOperation.cc
 
file  ThreadSequenceOperation.fwd.hh
 
file  ThreadSequenceOperation.hh
 TaskOperation class that restricts a chain to repacking.
 
file  ThreadSequenceOperationCreator.hh