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constraints Directory Reference
Directory dependency graph for constraints:
src/core/scoring/constraints

Files

file  AmberPeriodicFunc.cc
 Definition for periodic functions.
 
file  AmberPeriodicFunc.fwd.hh
 forward declaration for Mixture functions
 
file  AmberPeriodicFunc.hh
 Definition for a periodic function used in constraints.
 
file  AmbiguousConstraint.cc
 contains declarations for a type of constraint that holds a number of constraints
 
file  AmbiguousConstraint.fwd.hh
 
file  AmbiguousConstraint.hh
 contains declarations for a type of constraint that holds multiple other
 
file  AmbiguousNMRConstraint.cc
 contains declarations for a type of constraint that holds a number of constraints
 
file  AmbiguousNMRConstraint.fwd.hh
 
file  AmbiguousNMRConstraint.hh
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  AmbiguousNMRDistanceConstraint.cc
 
file  AmbiguousNMRDistanceConstraint.fwd.hh
 
file  AmbiguousNMRDistanceConstraint.hh
 
file  AngleConstraint.cc
 Definition of AngularConstraints.
 
file  AngleConstraint.fwd.hh
 
file  AngleConstraint.hh
 
file  AtomPairConstraint.cc
 
file  AtomPairConstraint.fwd.hh
 
file  AtomPairConstraint.hh
 
file  BackboneStubConstraint.cc
 
file  BackboneStubConstraint.fwd.hh
 
file  BackboneStubConstraint.hh
 
file  BasicConstraintCreators.cc
 
file  BasicConstraintCreators.hh
 
file  BigBinConstraint.cc
 
file  BigBinConstraint.hh
 
file  BoundConstraint.cc
 
file  BoundConstraint.fwd.hh
 
file  BoundConstraint.hh
 
file  CharmmPeriodicFunc.cc
 Definition for periodic functions.
 
file  CharmmPeriodicFunc.hh
 Definition for a periodic function used in constraints.
 
file  CircularGeneral1D_Func.cc
 A general 1D function that can be initialized by FArray or from text file. There's stuff like this all over Rosetta.
 
file  CircularGeneral1D_Func.fwd.hh
 forward declaration for CircularGeneral1D_Func class
 
file  CircularGeneral1D_Func.hh
 A general 1D function that can be initialized by FArray or from text file. There's stuff like this all over Rosetta.
 
file  CircularHarmonicFunc.cc
 Definition for functions used in definition of constraints.
 
file  CircularHarmonicFunc.fwd.hh
 forward declaration for CircularHarmonicFunc class
 
file  CircularHarmonicFunc.hh
 
file  CircularPowerFunc.cc
 
file  CircularPowerFunc.fwd.hh
 forward declaration for CircularPowerFunc class
 
file  CircularPowerFunc.hh
 Definition for functions used in definition of constraints.
 
file  CircularSigmoidalFunc.cc
 Definition for functions used in definition of constraints.
 
file  CircularSigmoidalFunc.fwd.hh
 forward declaration for CircularSigmoidalFunc class
 
file  CircularSigmoidalFunc.hh
 
file  ConstantConstraint.cc
 
file  ConstantConstraint.hh
 
file  ConstantFunc.cc
 Definition for functions used in definition of constraints.
 
file  ConstantFunc.fwd.hh
 forward declaration for Constant functions
 
file  ConstantFunc.hh
 Definition for functions used in definition of constraints.
 
file  Constraint.cc
 
file  Constraint.fwd.hh
 
file  Constraint.hh
 Base class definition for Constraint class hierarchy.
 
file  ConstraintCreator.cc
 
file  ConstraintCreator.fwd.hh
 
file  ConstraintCreator.hh
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  ConstraintEnergyContainer.cc
 
file  ConstraintEnergyContainer.fwd.hh
 
file  ConstraintEnergyContainer.hh
 
file  ConstraintFactory.cc
 Factory for creating various types of constraints.
 
file  ConstraintFactory.hh
 Factory for creating various types of constraints.
 
file  ConstraintGraph.cc
 
file  ConstraintGraph.fwd.hh
 Constraints Energy Graph class forward declaration.
 
file  ConstraintGraph.hh
 
file  ConstraintIO.cc
 
file  ConstraintIO.hh
 
file  Constraints.cc
 
file  Constraints.fwd.hh
 
file  Constraints.hh
 
file  ConstraintsEnergy.cc
 
file  ConstraintsEnergy.fwd.hh
 Constraints Energy Method forward declaration.
 
file  ConstraintsEnergy.hh
 Constraints Energy Method declaration.
 
file  ConstraintsEnergyCreator.hh
 Declaration for the class that connects ConstraintsEnergy with the ScoringManager.
 
file  ConstraintSet.cc
 
file  ConstraintSet.fwd.hh
 
file  ConstraintSet.hh
 
file  CoordinateConstraint.cc
 
file  CoordinateConstraint.hh
 
file  CountViolFunc.cc
 Weighted constraint function that reweights other constraints by a constant scalar value.
 
file  CountViolFunc.hh
 
file  CstMinimizationData.hh
 A cacheable data wrapper for ConstraintsOPs for use in minimization.
 
file  DihedralConstraint.cc
 
file  DihedralConstraint.fwd.hh
 
file  DihedralConstraint.hh
 
file  DihedralPairConstraint.cc
 
file  DihedralPairConstraint.hh
 
file  DistancePairConstraint.cc
 
file  DistancePairConstraint.hh
 
file  DOF_Constraint.fwd.hh
 
file  DOF_Constraint.hh
 
file  EtableFunc.cc
 
file  EtableFunc.fwd.hh
 forward declaration for Etable functions
 
file  EtableFunc.hh
 Definition for functions used in definition of constraints.
 
file  FabConstraint.cc
 This class is specific to antibodies and penalizes presence of non-cdr residues.
 
file  FabConstraint.fwd.hh
 This class is specific to antibodies and penalizes presence of residues flanking.
 
file  FabConstraint.hh
 This class is specific to antibodies and penalizes presence of residues flanking.
 
file  FadeFunc.cc
 
file  FadeFunc.fwd.hh
 forward declaration for Mixture functions
 
file  FadeFunc.hh
 Definition for functions used in definition of constraints.
 
file  FlatHarmonicFunc.cc
 
file  FlatHarmonicFunc.fwd.hh
 forward declaration for Mixture functions
 
file  FlatHarmonicFunc.hh
 Definition for functions used in definition of constraints.
 
file  FourPointsFunc.cc
 
file  FourPointsFunc.fwd.hh
 
file  FourPointsFunc.hh
 
file  Func.cc
 Definition for functions used in definition of constraints.
 
file  Func.fwd.hh
 
file  Func.hh
 Definition for functions used in definition of constraints.
 
file  FuncFactory.cc
 Factory for creating various types of constraints.
 
file  FuncFactory.fwd.hh
 Factory for creating various types of constraints.
 
file  FuncFactory.hh
 Factory for creating various types of constraints.
 
file  GaussianFunc.cc
 
file  GaussianFunc.fwd.hh
 forward declaration for Gaussian functions
 
file  GaussianFunc.hh
 Definition for functions used in definition of constraints.
 
file  HarmonicFunc.cc
 
file  HarmonicFunc.fwd.hh
 forward declaration for Mixture functions
 
file  HarmonicFunc.hh
 Definition for functions used in definition of constraints.
 
file  IdentityFunc.cc
 
file  IdentityFunc.fwd.hh
 forward declaration for Identity function
 
file  IdentityFunc.hh
 Definition for functions used in definition of constraints.
 
file  KarplusFunc.cc
 Definition for functions used in definition of constraints.
 
file  KarplusFunc.fwd.hh
 
file  KarplusFunc.hh
 
file  KofNConstraint.cc
 meta constraint where N constraints declared
 
file  KofNConstraint.fwd.hh
 meta constraint where N constraints declared
 
file  KofNConstraint.hh
 meta constraint where N constraints declared
 
file  LinearPenaltyFunction.cc
 
file  LinearPenaltyFunction.hh
 Linear penalty for values outside a certain range.
 
file  LocalCoordinateConstraint.cc
 
file  LocalCoordinateConstraint.hh
 
file  MinMultiHarmonicFunc.cc
 
file  MinMultiHarmonicFunc.fwd.hh
 forward declaration for Mixture functions
 
file  MinMultiHarmonicFunc.hh
 
file  MixtureFunc.cc
 Definition for functions used in definition of constraints.
 
file  MixtureFunc.fwd.hh
 forward declaration for Mixture functions
 
file  MixtureFunc.hh
 Definition for functions used in definition of constraints.
 
file  MultiConstraint.cc
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  MultiConstraint.fwd.hh
 
file  MultiConstraint.hh
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  NamedAtomPairConstraint.cc
 
file  NamedAtomPairConstraint.fwd.hh
 
file  NamedAtomPairConstraint.hh
 
file  NonResidueTypeConstraint.cc
 
file  NonResidueTypeConstraint.fwd.hh
 
file  NonResidueTypeConstraint.hh
 
file  PeriodicFunc.cc
 Definition for periodic functions.
 
file  PeriodicFunc.hh
 Definition for a periodic function used in constraints.
 
file  ResidueTypeConstraint.cc
 
file  ResidueTypeConstraint.fwd.hh
 
file  ResidueTypeConstraint.hh
 
file  ResidueTypeLinkingConstraint.cc
 
file  ResidueTypeLinkingConstraint.fwd.hh
 constrainting two residues to be the same type, based on
 
file  ResidueTypeLinkingConstraint.hh
 
file  ScalarWeightedFunc.cc
 Weighted constraint function that reweights other constraints by a constant scalar value.
 
file  ScalarWeightedFunc.fwd.hh
 
file  ScalarWeightedFunc.hh
 Weighted constraint function that encapsulates other constraints.
 
file  SequenceProfileConstraint.cc
 This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.
 
file  SequenceProfileConstraint.fwd.hh
 
file  SequenceProfileConstraint.hh
 This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design).
 
file  SequenceProfileConstraintCreator.hh
 
file  SigmoidFunc.cc
 
file  SigmoidFunc.fwd.hh
 
file  SigmoidFunc.hh
 Definition for functions used in definition of constraints.
 
file  SiteConstraint.cc
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraint.fwd.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraint.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.cc
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.fwd.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SkipViolFunc.cc
 Weighted constraint function that reweights other constraints by a constant scalar value.
 
file  SkipViolFunc.hh
 
file  SoedingFunc.cc
 
file  SoedingFunc.fwd.hh
 forward declaration for SoedingFunc class.
 
file  SoedingFunc.hh
 Definition for functions used in definition of constraints.
 
file  SOGFunc.cc
 
file  SOGFunc.fwd.hh
 forward declaration for SOG functions
 
file  SOGFunc.hh
 Definition for functions used in definition of constraints.
 
file  SOGFunc_Impl.cc
 Definition for functions used in definition of constraints.
 
file  SOGFunc_Impl.fwd.hh
 forward declaration for SOG functions
 
file  SOGFunc_Impl.hh
 Definition for functions used in definition of constraints.
 
file  SplineFunc.cc
 Constraint function for looking up data in a histogram over which a spline is created.
 
file  SplineFunc.fwd.hh
 forward declaration for SplineFunc
 
file  SplineFunc.hh
 Constraint function for looking up data in a histogram over which a spline is created.
 
file  SquareWell2Func.cc
 
file  SquareWell2Func.fwd.hh
 forward declaration for Mixture functions
 
file  SquareWell2Func.hh
 Definition for functions used in definition of constraints.
 
file  SquareWellFunc.cc
 
file  SquareWellFunc.fwd.hh
 forward declaration for Mixture functions
 
file  SquareWellFunc.hh
 Definition for functions used in definition of constraints.
 
file  SumFunc.cc
 Weighted constraint function that reweights other constraints by a constant scalar value.
 
file  SumFunc.fwd.hh
 
file  SumFunc.hh
 Sum of several individual constraints.
 
file  TopOutFunc.cc
 
file  TopOutFunc.fwd.hh
 Implementation of phenix "top-out" function.
 
file  TopOutFunc.hh
 Implementation of phenix "top-out" function Similar to Geman-McClure: harmonic near 'x0_', flat past 'limit_'.
 
file  USOGFunc.cc
 
file  USOGFunc.fwd.hh
 
file  USOGFunc.hh
 
file  util.cc
 utility functions for defining constraints. Maybe better placed in src/numeric?
 
file  util.hh
 utility functions for defining constraints. Maybe better placed in src/numeric?
 
file  XYZ_Func.cc
 
file  XYZ_Func.fwd.hh
 
file  XYZ_Func.hh