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Rosetta 3.5
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All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
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Rosetta 3.5
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Directories | |
| directory | chemical_shift |
Files | |
| file | Gaussian_parameter.hh |
| very simple class that records amplitude, center, and width of a Gaussian | |
| file | RG_Energy_RNA.cc |
| file | RG_Energy_RNA.hh |
| file | RG_Energy_RNACreator.hh |
| Declaration for the class that connects RG_Energy_RNA with the ScoringManager. | |
| file | RNA_AtomVDW.cc |
| file | RNA_AtomVDW.fwd.hh |
| file | RNA_AtomVDW.hh |
| Information on which atoms to use for computing clashes. | |
| file | RNA_BaseBaseEnergy.cc |
| Statistically derived rotamer pair potential class implementation. | |
| file | RNA_BaseBaseEnergy.fwd.hh |
| file | RNA_BaseBaseEnergy.hh |
| Statistically derived rotamer pair potential class declaration. | |
| file | RNA_BaseDoubletClasses.hh |
| file | RNA_BulgeEnergy.cc |
| file | RNA_BulgeEnergy.fwd.hh |
| file | RNA_BulgeEnergy.hh |
| Score function class. | |
| file | RNA_BulgeEnergyCreator.hh |
| file | RNA_CentroidInfo.cc |
| file | RNA_CentroidInfo.fwd.hh |
| file | RNA_CentroidInfo.hh |
| file | RNA_DataBackboneEnergy.cc |
| Statistically derived rotamer pair potential class implementation. | |
| file | RNA_DataBackboneEnergy.fwd.hh |
| file | RNA_DataBackboneEnergy.hh |
| Statistically derived rotamer pair potential class declaration. | |
| file | RNA_DataBackboneEnergyCreator.hh |
| Declaration for the class that connects RNA_DataBackboneEnergy with the ScoringManager. | |
| file | RNA_DataInfo.cc |
| file | RNA_DataInfo.fwd.hh |
| file | RNA_DataInfo.hh |
| file | RNA_FA_Stack.hh |
| file | RNA_FilteredBaseBaseInfo.cc |
| file | RNA_FilteredBaseBaseInfo.fwd.hh |
| file | RNA_FilteredBaseBaseInfo.hh |
| file | RNA_FittedTorsionInfo.cc |
| Statistically derived torsion information for RNA. | |
| file | RNA_FittedTorsionInfo.hh |
| Statistically derived torsion information for RNA. | |
| file | RNA_FullAtomStackingEnergy.cc |
| file | RNA_FullAtomStackingEnergy.fwd.hh |
| file | RNA_FullAtomStackingEnergy.hh |
| file | RNA_FullAtomStackingEnergyCreator.hh |
| Declaration for the class that connects RNA_FullAtomStackingEnergy with the ScoringManager. | |
| file | RNA_FullAtomVDW_BasePhosphate.cc |
| file | RNA_FullAtomVDW_BasePhosphate.fwd.hh |
| file | RNA_FullAtomVDW_BasePhosphate.hh |
| FullAtom VDW energy between the base and phosphate group in the same (intra) nucleotide. | |
| file | RNA_FullAtomVDW_BasePhosphateCreator.fwd.hh |
| file | RNA_FullAtomVDW_BasePhosphateCreator.hh |
| file | RNA_LJ_BaseEnergy.cc |
| file | RNA_LJ_BaseEnergy.fwd.hh |
| file | RNA_LJ_BaseEnergy.hh |
| van der waals over aromatics | |
| file | RNA_LJ_BaseEnergyCreator.hh |
| Declaration for the class that connects RNA_LJ_BaseEnergy with the ScoringManager. | |
| file | RNA_LowResolutionPotential.cc |
| file | RNA_LowResolutionPotential.fwd.hh |
| file | RNA_LowResolutionPotential.hh |
| file | RNA_Mg_Energy.cc |
| Statistically derived Mg(2+) binding potential for RNA. | |
| file | RNA_Mg_Energy.hh |
| Statistically derived Mg(2+) binding potential for RNA. | |
| file | RNA_Mg_EnergyCreator.hh |
| Declaration for the class that connects RNA_Mg_Energy with the ScoringManager. | |
| file | RNA_Mg_KnowledgeBasedPotential.cc |
| file | RNA_Mg_KnowledgeBasedPotential.fwd.hh |
| file | RNA_Mg_KnowledgeBasedPotential.hh |
| Information on which atoms to use for computing clashes. | |
| file | RNA_PairwiseLowResolutionEnergy.cc |
| Statistically derived rotamer pair potential class implementation. | |
| file | RNA_PairwiseLowResolutionEnergy.fwd.hh |
| file | RNA_PairwiseLowResolutionEnergy.hh |
| Statistically derived rotamer pair potential class declaration. | |
| file | RNA_PairwiseLowResolutionEnergyCreator.hh |
| Declaration for the class that connects RNA_PairwiseLowResolutionEnergy with the ScoringManager. | |
| file | RNA_RawBaseBaseInfo.cc |
| file | RNA_RawBaseBaseInfo.fwd.hh |
| file | RNA_RawBaseBaseInfo.hh |
| file | RNA_ScoringInfo.cc |
| file | RNA_ScoringInfo.fwd.hh |
| file | RNA_ScoringInfo.hh |
| file | RNA_SugarCloseEnergy.cc |
| file | RNA_SugarCloseEnergy.fwd.hh |
| file | RNA_SugarCloseEnergy.hh |
| Statistically derived rotamer pair potential class declaration. | |
| file | RNA_SugarCloseEnergyCreator.hh |
| file | RNA_Torsion.fwd.hh |
| file | RNA_TorsionEnergy.cc |
| file | RNA_TorsionEnergy.fwd.hh |
| file | RNA_TorsionEnergy.hh |
| Statistically derived rotamer pair potential class declaration. | |
| file | RNA_TorsionEnergyCreator.hh |
| Declaration for the class that connects RNA_TorsionEnergy with the ScoringManager. | |
| file | RNA_TorsionPotential.cc |
| file | RNA_TorsionPotential.fwd.hh |
| file | RNA_TorsionPotential.hh |
| file | RNA_Util.cc |
| file | RNA_Util.hh |
| file | RNA_VDW_Energy.cc |
| Statistically derived clash check for RNA. | |
| file | RNA_VDW_Energy.fwd.hh |
| file | RNA_VDW_Energy.hh |
| Statistically derived rotamer pair potential class declaration. | |
| file | RNA_VDW_EnergyCreator.hh |
| Declaration for the class that connects RNA_VDW_Energy with the ScoringManager. | |
1.8.4