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jd2 Directory Reference
Directory dependency graph for jd2:
src/protocols/jd2

Directories

directory  archive
 
directory  parser
 

Files

file  AtomTreeDiffJobInputter.cc
 
file  AtomTreeDiffJobInputter.fwd.hh
 
file  AtomTreeDiffJobInputter.hh
 header file for AtomTreeDiffJobInputter class
 
file  AtomTreeDiffJobInputterCreator.hh
 
file  AtomTreeDiffJobOutputter.cc
 AtomTreeDiffJobOutputter.
 
file  AtomTreeDiffJobOutputter.fwd.hh
 header file for AtomTreeDiffJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  AtomTreeDiffJobOutputter.hh
 header file for AtomTreeDiffJobOutputter class
 
file  AtomTreeDiffJobOutputterCreator.hh
 
file  BatchJobInputter.cc
 
file  BatchJobInputter.fwd.hh
 
file  BatchJobInputter.hh
 header file for BatchJobInputter class
 
file  BOINCJobDistributor.cc
 implementation of BOINCJobDistributor
 
file  BOINCJobDistributor.hh
 implementation of BOINCJobDistributor
 
file  DockDesignParser.cc
 August 2008 job distributor as planned at RosettaCon08 - Interface base class Parser.
 
file  DockDesignParser.hh
 header file for Parser class, part of August 2008 job distributor
 
file  FileJobOutputter.cc
 August 2008 job distributor as planned at RosettaCon08 - FileJobOutputter.
 
file  FileJobOutputter.fwd.hh
 header file for FileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  FileJobOutputter.hh
 header file for FileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  FileSystemJobDistributor.cc
 August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
 
file  FileSystemJobDistributor.fwd.hh
 August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
 
file  FileSystemJobDistributor.hh
 August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
 
file  InnerJob.cc
 
file  InnerJob.fwd.hh
 header file for InnerJob class, part of August 2008 job distributor as planned at RosettaCon08
 
file  InnerJob.hh
 header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
 
file  InnerMultiThreadingJob.cc
 
file  InnerMultiThreadingJob.fwd.hh
 header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
 
file  InnerMultiThreadingJob.hh
 
file  JD2ResourceManager.cc
 
file  JD2ResourceManager.fwd.hh
 Forward header for the JD2ResourceManager.
 
file  JD2ResourceManager.hh
 
file  JD2ResourceManagerCreator.hh
 
file  JD2ResourceManagerInputterCreator.hh
 
file  JD2ResourceManagerJobInputter.cc
 
file  JD2ResourceManagerJobInputter.hh
 
file  JD2ResourceManagerJobInputterCreator.hh
 
file  Job.cc
 August 2008 job distributor as planned at RosettaCon08 - Job classes.
 
file  Job.fwd.hh
 header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
 
file  Job.hh
 header file for ThreadingJob classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
 
file  JobDistributor.cc
 August 2008 job distributor as planned at RosettaCon08 - Base class.
 
file  JobDistributor.fwd.hh
 August 2008 job distributor as planned at RosettaCon08 - Base class.
 
file  JobDistributor.hh
 
file  JobDistributorFactory.cc
 
file  JobDistributorFactory.fwd.hh
 
file  JobDistributorFactory.hh
 
file  JobInputter.cc
 August 2008 job distributor as planned at RosettaCon08 - Interface base class JobInputter.
 
file  JobInputter.fwd.hh
 header file for JobInputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  JobInputter.hh
 header file for JobInputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  JobInputterCreator.cc
 
file  JobInputterCreator.hh
 Base class for JobInputterCreators for the JobInputter load-time factory registration scheme.
 
file  JobInputterFactory.cc
 JobInputterCreator base.
 
file  JobInputterFactory.fwd.hh
 JobInputterFactory forward header.
 
file  JobInputterFactory.hh
 JobInputterFactory.
 
file  JobOutputter.cc
 August 2008 job distributor as planned at RosettaCon08 - Base class JobOutputter.
 
file  JobOutputter.fwd.hh
 header file for JobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  JobOutputter.hh
 header file for JobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  JobOutputterCreator.cc
 
file  JobOutputterCreator.hh
 Base class for JobOutputterCreators for the JobOutputter load-time factory registration scheme.
 
file  JobOutputterFactory.cc
 JobOutputterCreator base.
 
file  JobOutputterFactory.fwd.hh
 JobOutputterFactory forward header.
 
file  JobOutputterFactory.hh
 JobOutputterFactory.
 
file  LazySilentFileJobInputter.cc
 
file  LazySilentFileJobInputter.fwd.hh
 
file  LazySilentFileJobInputter.hh
 
file  LazySilentFileJobInputterCreator.hh
 
file  MpiFileBuffer.cc
 
file  MpiFileBuffer.fwd.hh
 
file  MpiFileBuffer.hh
 header file for MPISilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08 this outputter will send silentstructs via MPI to dedicated node that will collect all structures
 
file  MPIFileBufJobDistributor.cc
 implementation of MPIFileBufJobDistributor
 
file  MPIFileBufJobDistributor.fwd.hh
 
file  MPIFileBufJobDistributor.hh
 
file  MPIMultiCommJobDistributor.cc
 implementation of MPIMultiCommJobDistributor
 
file  MPIMultiCommJobDistributor.fwd.hh
 
file  MPIMultiCommJobDistributor.hh
 
file  MPIWorkPartitionJobDistributor.cc
 implementation of MPIWorkPartitionJobDistributor - intended for MPI jobs on small numbers of nodes where the load can be balanced equally by the user
 
file  MPIWorkPartitionJobDistributor.fwd.hh
 forward header for MPIWorkPartitonJobDistributor
 
file  MPIWorkPartitionJobDistributor.hh
 header for MPIWorkPartitionJobDistributor - intended for MPI jobs on small numbers of nodes where the load can be balanced equally by the user
 
file  MPIWorkPoolJobDistributor.cc
 implementation of MPIWorkPoolJobDistributor
 
file  MPIWorkPoolJobDistributor.fwd.hh
 forward header for MPIWorkPoolJobDistributor
 
file  MPIWorkPoolJobDistributor.hh
 header for MPIWorkPoolJobDistributor - intended for continuous resamplig jobs that spawn new jobs based on a pool/archive of structures
 
file  MultiThreadingJob.cc
 
file  MultiThreadingJob.fwd.hh
 header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
 
file  MultiThreadingJob.hh
 
file  NoOutputJobOutputter.hh
 header file for NoOutputJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  NoOutputJobOutputterCreator.cc
 NoOutputJobOutputCreator class, part of November 2011 XRW2.
 
file  NoOutputJobOutputterCreator.hh
 
file  Parser.cc
 August 2008 job distributor as planned at RosettaCon08 - Interface base class Parser.
 
file  Parser.fwd.hh
 header file for Parser class, part of August 2008 job distributor
 
file  Parser.hh
 header file for Parser class, part of August 2008 job distributor
 
file  PDBJobInputter.cc
 August 2008 job distributor as planned at RosettaCon08 - Base class PDBJobInputter.
 
file  PDBJobInputter.fwd.hh
 header file for PDBJobInputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  PDBJobInputter.hh
 header file for PDBJobInputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  PDBJobInputterCreator.hh
 
file  PDBJobOutputter.cc
 August 2008 job distributor as planned at RosettaCon08 - PDBJobOutputter.
 
file  PDBJobOutputter.fwd.hh
 header file for PDBJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  PDBJobOutputter.hh
 header file for PDBJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  PDBJobOutputterCreator.hh
 
file  PoseInputStreamJobInputter.cc
 
file  PoseInputStreamJobInputter.fwd.hh
 
file  PoseInputStreamJobInputter.hh
 header file for PoseInputStreamJobInputter class
 
file  PoseInputStreamJobInputterCreator.hh
 
file  ScoreMap.cc
 A place to put some common functions for scoremap output.
 
file  ScoreMap.hh
 A place to put some common functions for scoremap output.
 
file  ScoreOnlyJobOutputter.cc
 
file  ScoreOnlyJobOutputter.fwd.hh
 
file  ScoreOnlyJobOutputter.hh
 
file  ScoreOnlyJobOutputterCreator.hh
 
file  ShuffleJobDistributor.cc
 
file  ShuffleJobDistributor.hh
 implementation of ShuffleFileSystemJobDistributor
 
file  SilentFileJobInputter.cc
 
file  SilentFileJobInputter.fwd.hh
 
file  SilentFileJobInputter.hh
 header file for SilentFileJobInputter class
 
file  SilentFileJobInputterCreator.hh
 
file  SilentFileJobOutputter.cc
 
file  SilentFileJobOutputter.fwd.hh
 header file for SilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  SilentFileJobOutputter.hh
 header file for SilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
 
file  SilentFileJobOutputterCreator.hh
 
file  SingleFileBuffer.cc
 
file  SingleFileBuffer.fwd.hh
 
file  SingleFileBuffer.hh
 
file  util.cc
 
file  util.hh
 August 2008 job distributor as planned at RosettaCon08 - Base class.