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antibody2 Directory Reference
Directory dependency graph for antibody2:
src/protocols/antibody2

Files

file  Ab_TemplateInfo.cc
 
file  Ab_TemplateInfo.fwd.hh
 
file  Ab_TemplateInfo.hh
 
file  AntibodyInfo.cc
 
file  AntibodyInfo.fwd.hh
 AntibodyInfo class forward declarations header.
 
file  AntibodyInfo.hh
 
file  AntibodyModelerProtocol.cc
 Build a homology model of an antibody2.
 
file  AntibodyModelerProtocol.fwd.hh
 forward declaration
 
file  AntibodyModelerProtocol.hh
 Build a homology model of an antibody2.
 
file  AntibodyUtil.cc
 
file  AntibodyUtil.hh
 
file  CDRsMinPackMin.cc
 Build a homology model of an antibody2.
 
file  CDRsMinPackMin.fwd.hh
 forward declaration
 
file  CDRsMinPackMin.hh
 Build a homology model of an antibody2.
 
file  CloseOneCDRLoop.cc
 grafts a cdr onto the template of an antibody framework
 
file  CloseOneCDRLoop.fwd.hh
 
file  CloseOneCDRLoop.hh
 
file  GraftCDRLoopsProtocol.cc
 Build a homology model of an antibody2.
 
file  GraftCDRLoopsProtocol.fwd.hh
 forward declaration
 
file  GraftCDRLoopsProtocol.hh
 Build a homology model of an antibody2.
 
file  GraftOneCDRLoop.cc
 grafts a cdr onto the template of an antibody framework
 
file  GraftOneCDRLoop.fwd.hh
 
file  GraftOneCDRLoop.hh
 grafts a cdr onto the template of an antibody framework
 
file  H3CterInsert.cc
 Build a homology model of an antibody2.
 
file  H3CterInsert.fwd.hh
 Build a homology model of an antibody2.
 
file  H3CterInsert.hh
 Build a homology model of an antibody2.
 
file  H3PerturbCCD.cc
 Build a homology model of an antibody2.
 
file  H3PerturbCCD.fwd.hh
 
file  H3PerturbCCD.hh
 Build a homology model of an antibody2.
 
file  H3RefineCCD.cc
 Build a homology model of an antibody2.
 
file  H3RefineCCD.fwd.hh
 
file  H3RefineCCD.hh
 Build a homology model of an antibody2.
 
file  LHRepulsiveRamp.cc
 Build a homology model of an antibody2.
 
file  LHRepulsiveRamp.fwd.hh
 
file  LHRepulsiveRamp.hh
 Build a homology model of an antibody2.
 
file  LHRepulsiveRampLegacy.cc
 Build a homology model of an antibody2.
 
file  LHRepulsiveRampLegacy.fwd.hh
 
file  LHRepulsiveRampLegacy.hh
 Build a homology model of an antibody2.
 
file  LHSnugFitLegacy.cc
 Build a homology model of an antibody2.
 
file  LHSnugFitLegacy.fwd.hh
 
file  LHSnugFitLegacy.hh
 Build a homology model of an antibody2.
 
file  ModelCDRH3.cc
 models CDR H3 loop using loop modeling
 
file  ModelCDRH3.fwd.hh
 
file  ModelCDRH3.hh
 
file  RefineBetaBarrel.cc
 Build a homology model of an antibody2.
 
file  RefineBetaBarrel.fwd.hh
 forward declaration
 
file  RefineBetaBarrel.hh
 Build a homology model of an antibody2.
 
file  RefineOneCDRLoop.cc
 Build a homology model of an antibody2.
 
file  RefineOneCDRLoop.fwd.hh
 
file  RefineOneCDRLoop.hh
 Build a homology model of an antibody2.
 
file  RefineOneCDRLoopCentroid.cc
 Build a homology model of an antibody2.
 
file  RefineOneCDRLoopCentroid.fwd.hh
 
file  RefineOneCDRLoopCentroid.hh
 Build a homology model of an antibody2.
 
file  SnugDock.cc
 Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization.
 
file  SnugDock.fwd.hh
 forward declaration
 
file  SnugDock.hh
 Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization.
 
file  SnugDockProtocol.cc
 Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization.
 
file  SnugDockProtocol.fwd.hh
 forward declaration
 
file  SnugDockProtocol.hh
 Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization.