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simple_moves Directory Reference
Directory dependency graph for simple_moves:
src/protocols/simple_moves

Directories

directory  asym_fold_and_dock
 
directory  carbohydrates
 
directory  chiral
 
directory  hbs
 
directory  oop
 
directory  rational_mc
 
directory  sidechain_moves
 
directory  symmetry
 

Files

file  AddCavitiesMover.cc
 
file  AddCavitiesMover.hh
 
file  AddConstraintsToCurrentConformationMover.cc
 Add constraints to the current pose conformation.
 
file  AddConstraintsToCurrentConformationMover.hh
 Add constraints to the current pose conformation.
 
file  AddConstraintsToCurrentConformationMoverCreator.hh
 
file  BackboneMover.cc
 
file  BackboneMover.fwd.hh
 BackboneMover forward declarations header.
 
file  BackboneMover.hh
 
file  BackboneMoverCreator.hh
 This class will create instances of protocols::moves::Movers SmallMover and ShearMover for the protocols::moves::MoverFactory.
 
file  BBConRotMover.cc
 
file  BBConRotMover.fwd.hh
 
file  BBConRotMover.hh
 
file  BBGaussianMover.cc
 
file  BBGaussianMover.fwd.hh
 -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
 
file  BBGaussianMover.hh
 
file  ClearConstraintsMover.cc
 Add constraints to the current pose conformation.
 
file  ClearConstraintsMover.hh
 Add constraints to the current pose conformation.
 
file  ClearConstraintsMoverCreator.hh
 
file  ConsensusDesignMover.cc
 cc file for ConsensusDesignMover
 
file  ConsensusDesignMover.fwd.hh
 fwd.hh file for ConsensusDesignMover
 
file  ConsensusDesignMover.hh
 header file for ConsensusDesignMover
 
file  ConsensusDesignMoverCreator.hh
 
file  ConstraintFragmentMover.hh
 
file  ConstrainToIdealMover.cc
 Adds to your pose constraints suitable for idealization of bond lengths and angles.
 
file  ConstrainToIdealMover.fwd.hh
 ConstrainToIdealMover forward declarations header.
 
file  ConstrainToIdealMover.hh
 Adds to your pose constraints suitable for idealization of bond lengths and angles.
 
file  ConstraintSetMover.cc
 Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
 
file  ConstraintSetMover.fwd.hh
 
file  ConstraintSetMover.hh
 Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
 
file  ConstraintSetMoverCreator.hh
 
file  CutChainMover.cc
 
file  CutChainMover.fwd.hh
 
file  CutChainMover.hh
 
file  CutChainMoverCreator.hh
 
file  ddG.cc
 implementation of the ddG class for computing interface delta dGs
 
file  ddG.fwd.hh
 Forward declarations for ddG.
 
file  ddG.hh
 
file  ddGCreator.hh
 
file  DesignRepackMover.cc
 
file  DesignRepackMover.fwd.hh
 Forward declations for DesignRepackMover.
 
file  DesignRepackMover.hh
 
file  DME_FilterMover.cc
 
file  DME_FilterMover.hh
 
file  DOFHistogramRecorder.cc
 
file  DOFHistogramRecorder.fwd.hh
 Forward declarations for class DOFHistogramRecorder.
 
file  DOFHistogramRecorder.hh
 
file  DumpPdb.cc
 
file  DumpPdb.hh
 
file  DumpPdbCreator.hh
 
file  ExtendedPoseMover.cc
 
file  ExtendedPoseMover.fwd.hh
 
file  ExtendedPoseMover.hh
 
file  ExtendedPoseMoverCreator.cc
 
file  ExtendedPoseMoverCreator.hh
 
file  FavorSequenceProfile.cc
 Add a SequenceProfileConstraint to a pose.
 
file  FavorSequenceProfile.hh
 Add a SequenceProfileConstraint to a pose.
 
file  FavorSequenceProfileCreator.hh
 Declaration of the protocols::moves::MoverCreator class for the FavorSequenceProfile.
 
file  ForceDisulfidesMover.cc
 
file  ForceDisulfidesMover.fwd.hh
 ForceDisulfidesMover forward declarations header.
 
file  ForceDisulfidesMover.hh
 
file  ForceDisulfidesMoverCreator.hh
 
file  FragmentMover.cc
 
file  FragmentMover.fwd.hh
 
file  FragmentMover.hh
 
file  GenericMonteCarloMover.cc
 
file  GenericMonteCarloMover.fwd.hh
 
file  GenericMonteCarloMover.hh
 perform a given mover and sample structures by MonteCarlo
 
file  GenericMonteCarloMoverCreator.hh
 
file  GreenPacker.cc
 packing mover that makes extensive reuse of rotamer pair energies class definition
 
file  GreenPacker.fwd.hh
 packing mover that makes extensive reuse of rotamer pair energies class forward declaration
 
file  GreenPacker.hh
 packing mover that makes extensive reuse of rotamer pair energies class declaration
 
file  GunnCost.cc
 
file  GunnCost.hh
 
file  HelicalPeptideLengthMover.cc
 Appends or prepends a single residue to a helical peptide that's attached to the rest of the pose by a jump.
 
file  HelicalPeptideLengthMover.fwd.hh
 
file  HelicalPeptideLengthMover.hh
 Definition of classes for changing the length of a helical peptide that's connected to the rest of the pose by a jump.
 
file  LoadPDBMover.cc
 simple mover that loads a pdb from file and replaces the current pdb with it. Useful for checkpointing
 
file  LoadPDBMover.fwd.hh
 switch the chain order
 
file  LoadPDBMover.hh
 switch the chain order
 
file  LoadPDBMoverCreator.hh
 
file  LoadUnboundRotMover.cc
 LoadUnboundRotMover methods implemented.
 
file  LoadUnboundRotMover.fwd.hh
 
file  LoadUnboundRotMover.hh
 
file  LoadUnboundRotMoverCreator.hh
 
file  MakePolyXMover.cc
 convert pose to poly XXX: any amino acid, default poly Ala
 
file  MakePolyXMover.fwd.hh
 convert pose to poly XXX: any amino acid, default poly Ala
 
file  MakePolyXMover.hh
 header file of MakePolyXMover.cc
 
file  MakePolyXMoverCreator.hh
 This class will create instances of protocols::moves::Mover MakePolyXMover for the protocols::moves::MoverFactory.
 
file  MembraneTopology.cc
 
file  MembraneTopology.fwd.hh
 
file  MembraneTopology.hh
 
file  MembraneTopologyCreator.hh
 
file  MinMover.cc
 
file  MinMover.fwd.hh
 MinMover forward declarations header.
 
file  MinMover.hh
 
file  MinMoverCreator.hh
 
file  MinPackMover.cc
 Implementation of the MinPackMover class; a wrapper class for invoking core::pack::min_pack.
 
file  MinPackMover.fwd.hh
 Forward declaration of the mover class to both pack and minimize rotamers.
 
file  MinPackMover.hh
 protocols::moves::Mover class to invoke core::pack::min_pack
 
file  MinPackMoverCreator.hh
 This class will create instances of protocols::moves::Mover MinPackMover for the protocols::moves::MoverFactory.
 
file  MissingDensityToJumpMover.cc
 Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
 
file  MissingDensityToJumpMover.fwd.hh
 Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
 
file  MissingDensityToJumpMover.hh
 
file  ModifyVariantTypeMover.cc
 Modify variant type to residues.
 
file  ModifyVariantTypeMover.fwd.hh
 
file  ModifyVariantTypeMover.hh
 
file  ModifyVariantTypeMoverCreator.hh
 
file  MonteCarloRecover.cc
 
file  MonteCarloRecover.fwd.hh
 
file  MonteCarloRecover.hh
 
file  MonteCarloRecoverCreator.hh
 
file  MonteCarloTest.cc
 
file  MonteCarloTest.fwd.hh
 
file  MonteCarloTest.hh
 perform a given mover and sample structures by MonteCarlo
 
file  MonteCarloTestCreator.hh
 
file  MutateResidue.cc
 
file  MutateResidue.fwd.hh
 
file  MutateResidue.hh
 
file  MutateResidueCreator.hh
 
file  O2M_MutateMover.cc
 Mover that takes a single starting structure and some task ops, and produces every single possible point mutation DOES NOT WORK WITH ROSETTASCRIPTS.
 
file  O2M_MutateMover.fwd.hh
 O2M_MutateMover forward declarations header.
 
file  O2M_MutateMover.hh
 Mover that takes a starting structure and some task ops, and produces every single possible point mutation DOES NOT WORK WITH ROSETTASCRIPTS.
 
file  PackRotamersMover.cc
 
file  PackRotamersMover.fwd.hh
 
file  PackRotamersMover.hh
 
file  PackRotamersMoverCreator.hh
 
file  PackRotamersMoverLazy.cc
 
file  PackRotamersMoverLazy.fwd.hh
 
file  PackRotamersMoverLazy.hh
 
file  PackRotamersMoverLazyCreator.hh
 
file  PDBReloadMover.cc
 
file  PDBReloadMover.fwd.hh
 PDBReloadMover forward declarations header.
 
file  PDBReloadMover.hh
 
file  PDBReloadMoverCreator.hh
 
file  PeptideStapleMover.cc
 Peptide Staples are covalent links between i/i+[4,7] residues in a helix. Applying a PeptideStapleMover creates one of these links.
 
file  PeptideStapleMover.fwd.hh
 
file  PeptideStapleMover.hh
 Definition of classes for placing peptide staples in the pose.
 
file  ProlineFixMover.cc
 
file  ProlineFixMover.fwd.hh
 
file  ProlineFixMover.hh
 
file  RepackSidechainsMover.cc
 
file  RepackSidechainsMover.fwd.hh
 
file  RepackSidechainsMover.hh
 
file  RepackSidechainsMoverCreator.hh
 
file  RepulsiveOnlyMover.cc
 calculate repulsive energy only for certain residues
 
file  RepulsiveOnlyMover.fwd.hh
 
file  RepulsiveOnlyMover.hh
 
file  ReturnSidechainMover.cc
 ReturnSidechainMover methods implemented.
 
file  ReturnSidechainMover.fwd.hh
 ReturnSidechainMover forward declarations header.
 
file  ReturnSidechainMover.hh
 protocols::moves::Mover to "return" proper sidechains to a pose that was temporarily in centroid mode (can be used for any sidechain copying)
 
file  RotamerTrialsMinMover.cc
 protocols::moves::Mover for Rotamer-Trials with Minimization (based on RotamerTrialsMover)
 
file  RotamerTrialsMinMover.fwd.hh
 
file  RotamerTrialsMinMover.hh
 Wrapper mover for Rotamer-Trials with Minimization (based on RotamerTrialsMover)
 
file  RotamerTrialsMinMoverCreator.hh
 This class will create instances of RotamerTrialsMinMover for the protocols::moves::MoverFactory.
 
file  RotamerTrialsMover.cc
 
file  RotamerTrialsMover.fwd.hh
 
file  RotamerTrialsMover.hh
 
file  RotamerTrialsMoverCreator.hh
 This class will create instances of protocols::moves::Mover SidechainMCMover for the protocols::moves::MoverFactory.
 
file  SaneMinMover.cc
 
file  SaneMinMover.fwd.hh
 
file  SaneMinMover.hh
 
file  SaneMinMoverCreator.hh
 
file  ScoreMover.cc
 
file  ScoreMover.fwd.hh
 ScoreMover forward declarations header.
 
file  ScoreMover.hh
 
file  ScoreMoverCreator.hh
 
file  SequenceProfileMover.cc
 moverization of code that was embedded in the parser
 
file  SequenceProfileMover.fwd.hh
 
file  SequenceProfileMover.hh
 BS mover to get around a stupid "mover" that was embedded in the parser.
 
file  SequenceProfileMoverCreator.hh
 
file  SetReturningPackRotamersMover.cc
 A pack mover which returns not just the best packer solution, but all nloop solutions.
 
file  SetReturningPackRotamersMover.fwd.hh
 
file  SetReturningPackRotamersMover.hh
 A PackRotamers mover which returns a set of packed poses for when ndruns/nloop is in use.
 
file  SetTorsion.cc
 
file  SetTorsion.fwd.hh
 
file  SetTorsion.hh
 
file  SetTorsionCreator.hh
 
file  ShakeStructureMover.cc
 
file  ShakeStructureMover.fwd.hh
 
file  ShakeStructureMover.hh
 
file  SmoothFragmentMover.cc
 
file  SmoothFragmentMover.fwd.hh
 
file  SmoothFragmentMover.hh
 
file  SuperimposeMover.cc
 
file  SuperimposeMover.fwd.hh
 SuperimposeMover forward declarations header.
 
file  SuperimposeMover.hh
 
file  SuperimposeMoverCreator.hh
 
file  SwitchChainOrderMover.cc
 
file  SwitchChainOrderMover.fwd.hh
 switch the chain order
 
file  SwitchChainOrderMover.hh
 switch the chain order
 
file  SwitchChainOrderMoverCreator.hh
 
file  SwitchResidueTypeSetMover.cc
 switch between residue type sets (e.g. centroid and all atom)
 
file  SwitchResidueTypeSetMover.fwd.hh
 switch between residue type sets (e.g. centroid and all atom)
 
file  SwitchResidueTypeSetMover.hh
 switch between residue type sets (e.g. centroid and all atom)
 
file  SwitchResidueTypeSetMoverCreator.hh
 
file  SymmetricFragmentMover.cc
 
file  SymmetricFragmentMover.fwd.hh
 
file  SymmetricFragmentMover.hh
 
file  TailsScoreMover.cc
 
file  TailsScoreMover.hh
 
file  TaskAwareMinMover.cc
 TaskAwareMinMover methods implemented.
 
file  TaskAwareMinMover.fwd.hh
 TaskAwareMinMover forward declarations header.
 
file  TaskAwareMinMover.hh
 MinMover which updates MoveMap to mirror PackerTask.
 
file  TaskAwareMinMoverCreator.hh
 
file  TorsionDOFMover.cc
 TorsionDOFMover methods implemented.
 
file  TorsionDOFMover.fwd.hh
 TorsionDOFMover forward declarations header.
 
file  TorsionDOFMover.hh
 TorsionDOFMover header.
 
file  WobbleMover.cc
 
file  WobbleMover.hh