Here is a list of all class members with links to the classes they belong to:

- k -

• K() : core::scoring::methods::CartBondedParameters , core::scoring::methods::BBIndepCartBondedParameters
• k : protocols::cluster::Exemplar , core::scoring::electron_density::OneGaussianScattering
• K() : core::scoring::methods::BBDepCartBondedParameters
• K0_ : core::scoring::methods::BBIndepCartBondedParameters
• k48r_48_lys_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_48k_mtsl_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_ctr_of_mass_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_docking_map_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_end_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_swap_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_trim_end_ : protocols::ub_e2c::ubi_e2c_modeler
• k_ : core::scoring::constraints::CharmmPeriodicFunc , core::scoring::constraints::PeriodicFunc
• K_ : core::scoring::constraints::KofNConstraint
• k_ : core::scoring::constraints::AmberPeriodicFunc
• k_angle_ : core::scoring::methods::IdealParametersDatabase
• k_length_ : core::scoring::methods::IdealParametersDatabase
• k_torsion_ : core::scoring::methods::IdealParametersDatabase
• k_torsion_improper_ : core::scoring::methods::IdealParametersDatabase
• k_torsion_proton_ : core::scoring::methods::IdealParametersDatabase
• Kabsch() : protocols::hybridization::TMalign
• Kappa() : core::scoring::FACTSPotential
• Kappa_ : core::scoring::FACTSPotential
• KarplusFunc() : core::scoring::constraints::KarplusFunc
• KB_description_ : core::scoring::constraints::SplineFunc
• KCluster() : protocols::toolbox::KCluster
• KClusterData() : protocols::toolbox::KClusterData
• KClusterElement() : protocols::toolbox::KClusterElement
• kDerivativeWindow : core::scoring::constraints::USOGFunc
• keep_1st_child_pos() : core::kinematics::tree::Atom , core::kinematics::tree::BondedAtom , core::kinematics::tree::JumpAtom
• keep_aas() : core::pack::task::operation::RestrictAbsentCanonicalAAS , protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation
• keep_aas_ : core::pack::task::operation::RestrictAbsentCanonicalAAS , core::pack::task::NOTAA , protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation
• keep_adding_to_statistics_ : protocols::jd2::archive::NormalizedEvaluatedArchive
• keep_all_protocol() : protocols::frag_picker::FragmentPicker
• keep_canonical_aas_ : core::pack::task::PIKAA
• keep_center : protocols::toolbox::ClusterOptions
• keep_covalent_ : protocols::enzdes::AddOrRemoveMatchCsts
• keep_disulfide_cys_ : protocols::simple_moves::MakePolyXMover
• keep_dof_fixed() : core::kinematics::tree::Atom , core::kinematics::tree::Atom_ , core::kinematics::tree::BondedAtom , core::kinematics::tree::JumpAtom
• keep_fragments() : protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
• keep_gly_ : protocols::simple_moves::MakePolyXMover
• keep_history() : protocols::moves::PyMolMover
• keep_history_ : protocols::moves::PyMolMover
• keep_input_foldtree_ : protocols::forge::remodel::RemodelLoopMover
• keep_input_protonation_state() : core::io::pdb::FileDataOptions
• keep_input_protonation_state_ : core::io::pdb::FileDataOptions
• keep_known_bb_torsions_at_junctions() : protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild
• keep_known_bb_torsions_at_junctions_ : protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild
• keep_motif() : protocols::motifs::BuildPosition
• keep_motifhit() : protocols::motifs::BuildPosition
• keep_nas_ : core::pack::task::PIKNA
• keep_pose_in_memory_ : protocols::swa::rna::StepWiseRNA_Clusterer
• keep_pose_in_memory_hydrid_ : protocols::swa::rna::StepWiseRNA_Clusterer
• keep_pro_ : protocols::simple_moves::MakePolyXMover
• keep_rnas_ : core::pack::task::PIKRNA
• keep_rnl_pose_ : protocols::enzdes::EnzdesScorefileFilter
• keep_rotamer() : protocols::motifs::BuildPosition
• keep_stats_type() : protocols::moves::TrialMover
• keep_stub_in_residue() : core::kinematics::Edge
• keep_top_pose() : protocols::forge::remodel::RemodelAccumulator
• kept_match() : protocols::match::output::BestMatchesCollection
• kept_match_dspos1() : protocols::match::output::BestMatchesCollection
• Key : core::scoring::packing::HolesParams
• key : protocols::loophash::LeapIndex , protocols::frag_picker::FragmentCandidate , protocols::frag_picker::VallChunk , protocols::frag_picker::VallResidue , protocols::toolbox::pose_metric_calculators::MetricValueGetter
• key_ : protocols::frag_picker::VallResidue , protocols::multistate_design::MetricCalculatorFitnessFunction , protocols::toolbox::pose_metric_calculators::MetricValueGetter
• keyname() : protocols::simple_moves::symmetry::ExtractAsymmetricUnitMoverCreator , protocols::simple_moves::symmetry::SetupForSymmetryMoverCreator , protocols::simple_moves::symmetry::DetectSymmetryMoverCreator , protocols::simple_moves::symmetry::ExtractAsymmetricPoseMoverCreator , protocols::toolbox::task_operations::ReadResfileFromDBCreator , protocols::simple_moves::SuperimposeMoverCreator , protocols::simple_moves::sidechain_moves::SidechainMoverCreator , protocols::simple_moves::sidechain_moves::SidechainMCMoverCreator , protocols::simple_moves::sidechain_moves::SetChiMoverCreator , protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMoverCreator , protocols::simple_moves::sidechain_moves::PerturbChiSidechainMoverCreator , protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMoverCreator , protocols::simple_moves::SetTorsionCreator , protocols::simple_moves::SequenceProfileMoverCreator , protocols::simple_moves::ScoreMoverCreator , protocols::simple_moves::SaneMinMoverCreator , protocols::simple_moves::RotamerTrialsMoverCreator , protocols::simple_moves::RotamerTrialsMinMoverCreator , protocols::simple_moves::RepackSidechainsMoverCreator , protocols::simple_moves::PDBReloadMoverCreator , protocols::toolbox::task_operations::RestrictToCDRH3LoopCreator , protocols::simple_moves::MutateResidueCreator , protocols::simple_moves::MonteCarloTestCreator , protocols::simple_moves::MonteCarloRecoverCreator , protocols::simple_moves::ModifyVariantTypeMoverCreator , protocols::simple_moves::MinPackMoverCreator , protocols::simple_moves::MinMoverCreator , protocols::simple_moves::MembraneTopologyCreator , protocols::toolbox::task_operations::RestrictToNeighborhoodOperationCreator , protocols::simple_moves::LoadUnboundRotMoverCreator , protocols::simple_moves::LoadPDBMoverCreator , protocols::simple_moves::GenericMonteCarloMoverCreator , protocols::simple_moves::ForceDisulfidesMoverCreator , protocols::simple_moves::FavorSequenceProfileCreator , protocols::simple_moves::ExtendedPoseMoverCreator , protocols::simple_moves::DumpPdbCreator , core::pack::task::operation::TaskOperationCreator , protocols::simple_moves::CutChainMoverCreator , protocols::simple_moves::ConstraintSetMoverCreator , protocols::simple_moves::ConsensusDesignMoverCreator , protocols::simple_moves::ClearConstraintsMoverCreator , protocols::simple_moves::ShearMoverCreator , protocols::simple_moves::SmallMoverCreator , protocols::simple_moves::AddConstraintsToCurrentConformationMoverCreator , protocols::fldsgn::potentials::SetAACompositionPotentialCreator , protocols::simple_filters::SymmetricMotifFilterCreator , protocols::simple_filters::SigmoidFilterCreator , protocols::simple_filters::SidechainRmsdFilterCreator , protocols::simple_filters::ShapeComplementarityFilterCreator , protocols::simple_filters::ScoreTypeFilterCreator , protocols::simple_filters::ScoreCutoffFilterCreator , protocols::simple_moves::SwitchChainOrderMoverCreator , protocols::simple_moves::SwitchResidueTypeSetMoverCreator , protocols::simple_filters::ResidueSetChainEnergyFilterCreator , protocols::simple_filters::ResidueIEFilterCreator , protocols::simple_filters::ResidueDistanceFilterCreator , protocols::simple_filters::ResidueCountFilterCreator , protocols::simple_filters::ResidueBurialFilterCreator , protocols::simple_filters::ReportFilterCreator , protocols::simple_filters::RelativePoseFilterCreator , protocols::fldsgn::potentials::SetSecStructEnergiesCreator , protocols::simple_filters::PoseInfoFilterCreator , protocols::simple_filters::PackStatFilterCreator , protocols::simple_filters::OperatorFilterCreator , protocols::simple_filters::NonSequentialNeighborsFilterCreator , protocols::simple_filters::NMerPSSMEnergyFilterCreator , protocols::simple_filters::NeighborTypeFilterCreator , core::pack::task::operation::RestrictYSDesignCreator , protocols::fldsgn::SheetCstGeneratorCreator , protocols::simple_filters::HolesFilterCreator , protocols::simple_filters::FileRemoveFilterCreator , protocols::simple_filters::FileExistFilterCreator , protocols::simple_filters::ExpiryFilterCreator , protocols::simple_filters::EnergyPerResidueFilterCreator , protocols::simple_filters::DeltaFilterCreator , protocols::simple_filters::DdgFilterCreator , protocols::flexpep_docking::FlexPepDockingProtocolCreator , protocols::simple_filters::ConservedPosMutationFilterCreator , protocols::simple_filters::BuriedUnsatHbondFilterCreator , protocols::simple_filters::AtomicDistanceFilterCreator , protocols::simple_filters::AtomicContactFilterCreator , protocols::simple_filters::AlaScanFilterCreator , protocols::seeded_abinitio::SwapSegmentCreator , core::pack::task::operation::PreventRepackingCreator , protocols::flxbb::FlxbbDesignCreator , protocols::seeded_abinitio::SeedFoldTreeCreator , protocols::seeded_abinitio::GrowPeptidesCreator , protocols::seeded_abinitio::DefineMovableLoopsCreator , protocols::seeded_abinitio::CoordinateCstCreator , protocols::seeded_abinitio::CloseFoldCreator , protocols::seeded_abinitio::CAcstGeneratorCreator , protocols::rotamer_recovery::RotamerRecoveryMoverCreator , protocols::simple_moves::symmetry::SymPackRotamersMoverCreator , protocols::rosetta_scripts::ParsedProtocolCreator , protocols::rigid::RollMoverCreator , protocols::rigid::RigidBodyPerturbNoCenterMoverCreator , protocols::relax::FastRelaxCreator , protocols::relax::ClassicRelaxCreator , protocols::qsar::scoring_grid::VdwGridCreator , protocols::flxbb::InterlockAromaCreator , core::pack::task::operation::PreserveCBetaCreator , protocols::qsar::scoring_grid::ScoringGridLoaderCreator , protocols::qsar::scoring_grid::RepGridCreator , protocols::qsar::scoring_grid::HbdGridCreator , protocols::qsar::scoring_grid::HbaGridCreator , protocols::qsar::scoring_grid::GridInitMoverCreator , protocols::qsar::scoring_grid::GridCreator , protocols::qsar::scoring_grid::ClassicGridCreator , protocols::flxbb::LayerDesignOperationCreator , protocols::qsar::scoring_grid::AtrGridCreator , protocols::qsar::RenderGridsToKinemageCreator , protocols::qsar::qsarCreator , protocols::protein_interface_design::ParserJobInputterCreator , protocols::protein_interface_design::movers::VLBCreator , protocols::protein_interface_design::movers::TryRotamersCreator , protocols::forge::constraints::ConstraintFileCstGeneratorCreator , core::pack::task::operation::AppendRotamerSetCreator , protocols::protein_interface_design::movers::SpliceCreator , protocols::protein_interface_design::movers::SpinMoverCreator , protocols::protein_interface_design::movers::ShoveResidueMoverCreator , protocols::protein_interface_design::movers::SetupHotspotConstraintsMoverCreator , protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMoverCreator , protocols::protein_interface_design::movers::SetTemperatureFactorCreator , protocols::protein_interface_design::movers::SetAtomTreeCreator , protocols::forge::constraints::InverseRotamersCstGeneratorCreator , protocols::protein_interface_design::movers::RepackMinimizeCreator , protocols::protein_interface_design::movers::RandomMutationCreator , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMoverCreator , protocols::protein_interface_design::movers::PrepackMoverCreator , protocols::protein_interface_design::movers::PlaceStubMoverCreator , protocols::toolbox::task_operations::PreventResiduesFromRepackingOperationCreator , protocols::toolbox::task_operations::ProteinCoreFilterCreator , protocols::forge::constraints::InvrotTreeCstGeneratorCreator , protocols::protein_interface_design::movers::PlacementAuctionMoverCreator , protocols::protein_interface_design::movers::PeptideStapleDesignMoverCreator , protocols::protein_interface_design::movers::MapHotspotCreator , protocols::protein_interface_design::movers::LoopRemodelCreator , protocols::protein_interface_design::movers::LoopOverCreator , protocols::protein_interface_design::movers::LoopMoverFromCommandLineCreator , protocols::protein_interface_design::movers::LoopLengthChangeCreator , core::pack::task::operation::AppendResidueRotamerSetCreator , protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator , protocols::protein_interface_design::movers::HotspotHasherMoverCreator , protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator , protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator , protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator , protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator , protocols::forge::constraints::NtoCCstGeneratorCreator , protocols::forge::constraints::RemoveCstsCreator , protocols::protein_interface_design::movers::BuildAlaPoseCreator , protocols::protein_interface_design::movers::BestHotspotCstMoverCreator , protocols::protein_interface_design::movers::BackrubDDMoverCreator , protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator , protocols::protein_interface_design::movers::AddChainBreakCreator , protocols::protein_interface_design::filters::TorsionCreator , protocols::protein_interface_design::filters::StubScoreLoopsFilterCreator , core::pack::task::operation::AppendRotamerCreator , protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterCreator , protocols::protein_interface_design::filters::SequenceRecoveryFilterCreator , protocols::protein_interface_design::filters::RmsdFilterCreator , protocols::forge::remodel::RemodelLoopMoverCreator , protocols::protein_interface_design::filters::InterfaceHolesFilterCreator , protocols::protein_interface_design::filters::HbondsToResidueFilterCreator , protocols::toolbox::task_operations::RestrictNativeResiduesOperationCreator , protocols::forge::remodel::RemodelMoverCreator , protocols::protein_interface_design::filters::DesignableResiduesFilterCreator , protocols::protein_interface_design::filters::BoltzmannFilterCreator , protocols::protein_interface_design::filters::BindingStrainFilterCreator , protocols::protein_interface_design::filters::AverageDegreeFilterCreator , protocols::protein_interface_design::filters::AtomicContactCountFilterCreator , protocols::pockets::PocketConstraintCreator , protocols::pb_potential::SetupPoissonBoltzmannPotentialCreator , core::pack::task::operation::SetRotamerCouplingsCreator , protocols::moves::RampingMoverCreator , protocols::moves::MoverCreator , protocols::moves::RandomMoverCreator , protocols::forge::remodel::RemodelRotamerLinksCreator , protocols::moves::IfMoverCreator , protocols::moves::DsspMoverCreator , protocols::forge::remodel::ResidueVicinityCstGeneratorCreator , protocols::toolbox::task_operations::RestrictToInterfaceCreator , protocols::loops::loops_definers::LoopsDefinerLoaderCreator , protocols::loops::loop_mover::refine::SmallMinCCDTrialCreator , protocols::loops::loop_mover::refine::ShearMinCCDTrialCreator , core::pack::task::operation::SetRotamerLinksCreator , protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainerCreator , protocols::loops::loop_mover::refine::LoopMover_Refine_KICCreator , protocols::loops::loop_mover::refine::LoopMover_Refine_CCDCreator , protocols::hotspot_hashing::movers::PlaceSurfaceProbeCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCDCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_MovesCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_KICCreator , protocols::toolbox::task_operations::RestrictToLoopsAndNeighborsCreator , protocols::loops::FoldTreeFromLoopsCreator , protocols::loophash::LoopHashMoverWrapperCreator , protocols::hybridization::HybridizeProtocolCreator , core::pack::task::operation::ReadResfileCreator , protocols::ligand_docking::TranslateCreator , protocols::ligand_docking::TransformCreator , protocols::ligand_docking::StartFromCreator , protocols::ligand_docking::SlideTogetherCreator , protocols::ligand_docking::RotatesCreator , protocols::ligand_docking::RotateCreator , protocols::ligand_docking::RandomConformersCreator , protocols::hybridization::CartesianSamplerCreator , protocols::ligand_docking::MolarMassFilterCreator , protocols::ligand_docking::MinimizeBackboneCreator , protocols::ligand_docking::LigandAreaLoaderCreator , protocols::idealize::IdealizeMoverCreator , protocols::ligand_docking::InterfaceBuilderLoaderCreator , protocols::ligand_docking::LigandDesignCreator , core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator , protocols::jd2::AtomTreeDiffJobInputterCreator , protocols::ligand_docking::HeavyAtomFilterCreator , protocols::ligand_docking::HBondDonorFilterCreator , protocols::ligand_docking::HBondAcceptorFilterCreator , protocols::ligand_docking::GrowLigandCreator , protocols::ligand_docking::FinalMinimizerCreator , protocols::ligand_docking::CompoundTranslateCreator , protocols::ligand_docking::CompleteConnectionsFilterCreator , protocols::jd2::AtomTreeDiffJobOutputterCreator , protocols::ligand_docking::AtomCountFilterCreator , protocols::ligand_docking::AddHydrogensCreator , protocols::jd2::SilentFileJobOutputterCreator , core::pack::task::operation::IncludeCurrentCreator , protocols::jd2::ScoreOnlyJobOutputterCreator , protocols::jd2::PoseInputStreamJobInputterCreator , protocols::jd2::JD2ResourceManagerJobInputterCreator , protocols::jd2::JobInputterCreator , protocols::jd2::parser::MonteCarloLoaderCreator , protocols::jd2::parser::FragSetLoaderCreator , protocols::jd2::parser::TaskOperationLoaderCreator , protocols::jd2::parser::ScoreFunctionLoaderCreator , protocols::toolbox::task_operations::RestrictToInterfaceOperationCreator , core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator , protocols::jd2::JobOutputterCreator , protocols::jd2::LazySilentFileJobInputterCreator , core::pack::task::operation::InitializeFromCommandlineCreator , protocols::jd2::NoOutputJobOutputterCreator , protocols::jd2::parser::DataLoaderCreator , protocols::toolbox::task_operations::RestrictToInterfaceVectorOperationCreator , core::pack::task::operation::ExtraRotamersGenericCreator , core::pack::task::operation::RotamerExplosionCreator , protocols::toolbox::task_operations::RestrictByCalculatorsOperationCreator , protocols::toolbox::task_operations::RestrictNonSurfaceToRepackingOperationCreator , core::pack::task::operation::RestrictAbsentCanonicalAASCreator , protocols::jd2::PDBJobInputterCreator , protocols::jd2::PDBJobOutputterCreator , core::pack::task::operation::RestrictResidueToRepackingCreator , core::pack::task::operation::RestrictToRepackingCreator , protocols::jd2::SilentFileJobInputterCreator , core::pack::task::operation::DisallowIfNonnativeCreator , protocols::toolbox::task_operations::RestrictResiduesToRepackingOperationCreator , core::pack::task::operation::ExtraRotamersCreator , protocols::ligand_docking::ChainExistsFilterCreator , core::pack::task::operation::ExtraChiCutoffCreator , protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperationCreator , core::scoring::constraints::AtomPairConstraintCreator , core::scoring::constraints::AngleConstraintCreator , protocols::toolbox::task_operations::RestrictChainToRepackingOperationCreator , core::scoring::constraints::DihedralConstraintCreator , protocols::fldsgn::MatchResiduesMoverCreator , protocols::fldsgn::filters::SheetTopologyFilterCreator , protocols::fldsgn::filters::SecondaryStructureFilterCreator , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilterCreator , protocols::fldsgn::filters::NcontactsFilterCreator , protocols::fldsgn::filters::InterlockingAromaFilterCreator , protocols::fldsgn::filters::HSSTripletFilterCreator , protocols::simple_moves::PackRotamersMoverCreator , protocols::fldsgn::filters::HelixKinkFilterCreator , protocols::fldsgn::filters::FragQualFilterCreator , protocols::fldsgn::filters::CoreDunbrackFilterCreator , protocols::simple_moves::MakePolyXMoverCreator , protocols::fldsgn::BluePrintBDRCreator , protocols::filters::TimeFilterCreator , protocols::filters::ReplicateFilterCreator , protocols::simple_moves::ddGCreator , protocols::filters::ContingentFilterCreator , protocols::filters::CalculatorFilterCreator , protocols::filters::IfThenFilterCreator , protocols::simple_filters::TerminusDistanceFilterCreator , protocols::filters::CombinedFilterCreator , protocols::filters::CompoundFilterCreator , protocols::filters::StochasticFilterCreator , protocols::simple_filters::RotamerBoltzmannWeightFilterCreator , protocols::filters::TrueFilterCreator , protocols::features::ReportToDBCreator , protocols::features::DatabaseJobOutputterCreator , protocols::simple_filters::RangeFilterCreator , protocols::enzdes::SetCatalyticResPackBehaviorCreator , protocols::enzdes::ProteinLigandInterfaceUpweighterOperationCreator , protocols::enzdes::PackRotamersMoverPartGreedyCreator , protocols::ligand_docking::HighResDockerCreator , protocols::enzdes::EnzdesScorefileFilterCreator , protocols::enzdes::RepackWithoutLigandFilterCreator , protocols::enzdes::LigInterfaceEnergyFilterCreator , protocols::simple_filters::ConstraintScoreCutoffFilterCreator , protocols::enzdes::LigBurialFilterCreator , protocols::enzdes::EnzScoreFilterCreator , protocols::enzdes::DiffAtomSasaFilterCreator , protocols::seeded_abinitio::SegmentHybridizerCreator , protocols::enzdes::EnzdesJobOutputterCreator , protocols::enzdes::EnzdesJobInputterCreator , protocols::enzdes::DetectProteinLigandInterfaceOperationCreator , protocols::rosetta_scripts::SavePoseMoverCreator , protocols::enzdes::AddRigidBodyLigandConfsCreator , protocols::enzdes::AddOrRemoveMatchCstsCreator , protocols::enzdes::AddLigandMotifRotamersOperationCreator , protocols::ligand_docking::InterfaceScoreCalculatorCreator , protocols::docking::TemperedDockingCreator , protocols::docking::DockSetupMoverCreator , protocols::docking::DockingProtocolCreator , protocols::qsar::scoring_grid::ChargeGridCreator , protocols::docking::ConformerSwitchMoverCreator , protocols::dna::WatsonCrickRotamerCouplingsCreator , protocols::dna::SeparateDnaFromNonDnaCreator , protocols::protein_interface_design::movers::TaskAwareCstsCreator , protocols::dna::DnaInterfacePackerCreator , protocols::dna::DnaInterfaceMultiStateDesignCreator , protocols::dna::DnaInterfaceMinMoverCreator , protocols::protein_interface_design::movers::SaveAndRetrieveSidechainsCreator , protocols::design_opt::ParetoOptMutationMoverCreator , protocols::design_opt::GreedyOptMutationMoverCreator , protocols::protein_interface_design::movers::PlaceSimultaneouslyMoverCreator , core::scoring::constraints::DihedralPairConstraintCreator , protocols::constraints_additional::SequenceCouplingConstraintCreator , protocols::constraints_additional::SequenceCoupling1BDConstraintCreator , protocols::constraints_additional::BindingSiteConstraintCreator , protocols::protein_interface_design::movers::LoopFinderCreator , protocols::comparative_modeling::LoopRelaxMoverCreator , protocols::comparative_modeling::GenericJobInputterCreator , protocols::canonical_sampling::TrialCounterObserverCreator , core::scoring::constraints::BigBinConstraintCreator , protocols::canonical_sampling::SilentTrajectoryRecorderCreator , protocols::canonical_sampling::SidechainMetropolisHastingsMoverCreator , protocols::canonical_sampling::PDBTrajectoryRecorderCreator , protocols::protein_interface_design::filters::StubScoreFilterCreator , protocols::canonical_sampling::MetropolisHastingsMoverCreator , protocols::protein_interface_design::filters::RelativeSegmentFilterCreator , protocols::canonical_sampling::HamiltonianExchangeCreator , protocols::protein_interface_design::filters::FilterScanFilterCreator , protocols::backrub::BackrubMoverCreator , protocols::analysis::InterfaceAnalyzerMoverCreator , protocols::abinitio::DomainAssemblyCreator , protocols::nonlocal::SingleFragmentMoverCreator , core::sequence::ChemicalShiftSequenceCreator , protocols::moves::IteratedConvergenceMoverCreator , core::sequence::SequenceCouplingCreator , protocols::motifs::MotifDnaPackerCreator , core::sequence::SimpleSequenceCreator , protocols::loops::loop_mover::refine::RepackTrialCreator , core::scoring::constraints::ConstraintCreator , protocols::loops::loop_mover::refine::LoopMover_Refine_BackrubCreator , core::scoring::constraints::SiteConstraintResiduesCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCDCreator , core::scoring::constraints::AmbiguousNMRConstraintCreator , protocols::ligand_docking::MoveMapBuilderLoaderCreator , core::scoring::constraints::LocalCoordinateConstraintCreator , core::scoring::constraints::CoordinateConstraintCreator , core::scoring::constraints::MultiConstraintCreator , protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperationCreator , core::scoring::constraints::AmbiguousConstraintCreator , protocols::ligand_docking::MolecularMassFilterCreator , core::scoring::constraints::KofNConstraintCreator , protocols::toolbox::task_operations::RestrictInterGroupVectorOperationCreator , protocols::simple_moves::symmetry::SetupNCSMoverCreator , protocols::toolbox::task_operations::JointSequenceOperationCreator , core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator , protocols::loop_build::LoopMover_SlidingWindowCreator , protocols::loophash::LoopHashDiversifierCreator , core::scoring::constraints::SiteConstraintCreator , protocols::toolbox::task_operations::ProteinInterfaceDesignOperationCreator , core::scoring::constraints::FabConstraintCreator , core::scoring::constraints::SequenceProfileConstraintCreator , protocols::toolbox::task_operations::LimitAromaChi2OperationCreator , core::sequence::SequenceProfileCreator , protocols::match::MatcherMoverCreator , core::sequence::CompositeSequenceCreator , protocols::toolbox::task_operations::ModifyAnnealerCreator , core::sequence::SequenceCreator , protocols::toolbox::task_operations::PreventChainFromRepackingOperationCreator , protocols::simple_moves::symmetry::SymMinMoverCreator , protocols::simple_moves::symmetry::SymRotamerTrialsMoverCreator , protocols::backrub::BackrubSidechainMoverCreator , protocols::protein_interface_design::filters::DisulfideFilterCreator , protocols::canonical_sampling::MetricRecorderCreator , protocols::simple_moves::TaskAwareMinMoverCreator , protocols::canonical_sampling::ParallelTemperingCreator , protocols::toolbox::task_operations::DesignAroundOperationCreator , core::pack::task::operation::AddBehaviorRLTCreator , core::pack::task::operation::PreventRepackingRLTCreator , core::pack::task::operation::DisallowIfNonnativeRLTCreator , protocols::fldsgn::filters::HelixPairingFilterCreator , core::pack::task::operation::RestrictToRepackingRLTCreator , protocols::fldsgn::CircularPermutationCreator , core::pack::task::operation::ChainIsntCreator , protocols::filters::FilterCreator , core::pack::task::operation::ResiduePDBIndexIsntCreator , protocols::filters::MoveBeforeFilterCreator , core::pack::task::operation::ResidueIndexIsntCreator , protocols::simple_filters::ResiduesInInterfaceFilterCreator , core::pack::task::operation::ResidueName3IsntCreator , protocols::features::DatabaseJobInputterCreator , core::pack::task::operation::ResidueLacksPropertyCreator , protocols::simple_filters::InterfaceSasaFilterCreator , core::pack::task::operation::ResidueTypeFilterCreator , protocols::enzdes::LigDSasaFilterCreator , core::pack::task::operation::AllResFilterCreator , protocols::seeded_abinitio::SeedSetupMoverCreator , core::pack::task::operation::ResFilterCreator , protocols::enzdes::BackboneSamplerCreator , core::pack::task::operation::OptHCreator , protocols::qsar::scoring_grid::SolvationMetaGridCreator , core::pack::task::operation::OperateOnCertainResiduesCreator , protocols::docking::DockingInitialPerturbationCreator , core::pack::dunbrack::DunbrackConstraintCreator , protocols::protein_interface_design::movers::SubroutineMoverCreator , core::io::silent::BinaryRNASilentStructCreator , protocols::dna::DesignProteinBackboneAroundDNACreator , core::io::silent::BinaryProteinSilentStructCreator , protocols::contact_map::ContactMapCreator , core::io::silent::ProteinSilentStructCreator , protocols::comparative_modeling::ThreadingJobInputterCreator , protocols::canonical_sampling::SimulatedTemperingCreator , protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator , protocols::protein_interface_design::movers::DisulfideMoverCreator , core::import_pose::PDBSilentStructCreator , core::io::silent::ProteinSilentStruct_SinglePrecCreator , protocols::toolbox::task_operations::RestrictToTerminiOperationCreator , core::io::silent::RNA_SilentStructCreator , protocols::constraints_additional::NamedAtomPairConstraintCreator , protocols::protein_interface_design::movers::PlacementMinimizationMoverCreator , protocols::protein_interface_design::movers::PlaceOnLoopCreator , core::io::silent::ScoreFileSilentStructCreator , core::io::silent::SilentStructCreator , protocols::dna::RestrictDesignToProteinDNAInterfaceCreator , core::pack::task::operation::NoRepackDisulfidesCreator , core::pack::task::operation::OptCysHGCreator , protocols::electron_density::SetupForDensityScoringMoverCreator , protocols::qsar::scoring_grid::SolvationGridCreator , core::pack::task::operation::ReplicateTaskCreator , core::pack::task::operation::AnyResFilterCreator , protocols::enzdes::PredesignPerturbMoverCreator , core::pack::task::operation::NoResFilterCreator , protocols::toolbox::task_operations::SelectBySASAOperationCreator , core::pack::task::operation::ResidueHasPropertyCreator , protocols::enzdes::EnzRepackMinimizeCreator , protocols::simple_filters::InterfaceBindingEnergyDensityFilterCreator , core::pack::task::operation::ResidueName3IsCreator , core::pack::task::operation::ResidueIndexIsCreator , protocols::filters::FalseFilterCreator , core::pack::task::operation::ResiduePDBIndexIsCreator , protocols::toolbox::task_operations::SeqprofConsensusOperationCreator , protocols::toolbox::task_operations::SetIGTypeOperationCreator , core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator , protocols::toolbox::task_operations::ThreadSequenceOperationCreator , core::pack::task::operation::ChainIsCreator , core::pack::task::operation::ResLvlTaskOperationCreator , protocols::toolbox::task_operations::RestrictConservedLowDdgOperationCreator
• keyword_in_progress() : core::io::pdb::HeaderInformation
• keyword_in_progress_ : core::io::pdb::HeaderInformation
• keywords() : core::io::pdb::HeaderInformation
• Keywords : core::io::pdb::HeaderInformation
• keywords_ : core::io::pdb::HeaderInformation
• kic_ : protocols::seeded_abinitio::CloseFold
• KIC_loop_close() : protocols::swa::protein::StepWiseProteinLoopBridger
• KIC_loop_close_with_perturbations() : protocols::swa::protein::StepWiseProteinLoopBridger
• kill_antiparallel() : core::scoring::SS_Killhairpins_Info
• kill_antiparallel_ : core::scoring::SS_Killhairpins_Info
• kill_parallel() : core::scoring::SS_Killhairpins_Info
• kill_parallel_ : core::scoring::SS_Killhairpins_Info
• kind : core::scoring::packstat::Event
• kinemage_file_name_ : protocols::match::output::WriteUpstreamCoordinateKinemage , protocols::match::output::WriteUpstreamHitKinemage
• kinematic_control_ : protocols::abinitio::Protocol
• kinematic_mover_ : protocols::protein_interface_design::movers::PlaceOnLoop , protocols::enzdes::EnzdesFlexBBProtocol
• KinematicAbinitio() : protocols::abinitio::KinematicAbinitio
• KinematicControl() : protocols::abinitio::KinematicControl
• KinematicMover() : protocols::loops::loop_closure::kinematic_closure::KinematicMover
• KinematicPerturber() : protocols::loops::loop_closure::kinematic_closure::KinematicPerturber
• kinematics() : protocols::abinitio::Protocol
• KinematicTaskControl() : protocols::abinitio::KinematicTaskControl
• KinematicWrapper() : protocols::loops::loop_closure::kinematic_closure::KinematicWrapper
• KinFunGroupTK() : protocols::kinmatch::KinFunGroupTK
• kinked_ : protocols::antibody::Antibody
• kinmover_ : protocols::loops::loop_closure::kinematic_closure::KinematicPerturber , protocols::loops::loop_closure::kinematic_closure::KinematicWrapper
• KMedoid() : protocols::toolbox::KMedoid
• kMinGaussianScore : core::scoring::constraints::USOGFunc
• known_atoms_ : core::scoring::saxs::FormFactorManager
• KofNConstraint() : core::scoring::constraints::KofNConstraint
• KofNConstraintCreator() : core::scoring::constraints::KofNConstraintCreator
• kosher() : core::conformation::symmetry::VirtualCoordinates
• KromerMann() : core::scoring::electron_density::KromerMann
• KRSQuery() : protocols::kinmatch::KRSQuery
• Ks_spline_ : core::scoring::methods::BBDepCartBondedParameters
• kT() : core::sequence::MCAligner
• kT_ : protocols::surface_docking::FullatomRelaxMover , protocols::swa::monte_carlo::RNA_SWA_MonteCarloMover , protocols::surface_docking::CentroidRelaxMover , core::sequence::MCAligner , protocols::swa::monte_carlo::RNA_AddMover , protocols::optimize_weights::PNatLigPoseOptEData
• Ktheta() : core::scoring::mm::MMBondAngleResidueTypeParam
• Ktheta_ : core::scoring::mm::MMBondAngleResidueTypeParam
• kurtosis() : protocols::toolbox::InteratomicVarianceMatrix