Here is a list of all class members with links to the classes they belong to:
- w -
- w
: protocols::pockets::NonPlaidFingerprint::float4
, protocols::simple_filters::Quat
- w1_
: protocols::sic_dock::SICFast
, core::scoring::constraints::SoedingFunc
- w2_
: core::scoring::constraints::SoedingFunc
, protocols::sic_dock::SICFast
- W2I_1
: protocols::sparta::ANN
- W2I_2
: protocols::sparta::ANN
- W2I_3
: protocols::sparta::ANN
- W2L1_1
: protocols::sparta::ANN
- W2L1_2
: protocols::sparta::ANN
- W2L1_3
: protocols::sparta::ANN
- W2L2_1
: protocols::sparta::ANN
- W2L2_2
: protocols::sparta::ANN
- W2L2_3
: protocols::sparta::ANN
- wait_for_remote_vars()
: protocols::optimize_weights::OptEMultifunc
- wait_semaphore()
: protocols::boinc::Boinc
- wait_time()
: protocols::wum2::WorkUnit_Wait
- wait_time_
: protocols::wum2::WorkUnit_Wait
- waiting_on_dependencies()
: protocols::forge::build::BuildInstruction
- wall_time()
: protocols::wum::MPI_WorkUnitManager
- was_modified()
: protocols::frag_picker::scores::FragmentScoreMap
- was_modified_
: protocols::frag_picker::scores::FragmentScoreMap
- water_adduct_hbond_potential_
: core::scoring::ScoringManager
- water_adduct_hbond_score()
: core::scoring::WaterAdductHBondPotential
- water_builder_map_
: core::scoring::methods::LKB_ResidueInfo
- WATER_PACKING_INFO
: core::pose::datacache::CacheableDataType
- WaterAdductHBondEnergy()
: core::scoring::methods::WaterAdductHBondEnergy
- WaterAdductHBondPotential()
: core::scoring::WaterAdductHBondPotential
- WaterAdductIntraEnergy()
: core::scoring::methods::WaterAdductIntraEnergy
- WaterBuilder()
: core::scoring::methods::WaterBuilder
- WaterBuilderMap
: core::scoring::methods::LKB_ResidueInfo
- WaterPackingInfo()
: core::pack::rotamer_set::WaterPackingInfo
- waters()
: core::scoring::methods::LKB_ResidueInfo
- waters_
: core::scoring::methods::LKB_ResidueInfo
- WaterWeightGridSet()
: core::scoring::geometric_solvation::WaterWeightGridSet
- wbb_bb_
: core::scoring::hackelec::weight_triple
, core::scoring::hackelec::HackElecEnergy
- wbb_sc_
: core::scoring::hackelec::weight_triple
, core::scoring::hackelec::HackElecEnergy
- weight()
: core::scoring::RDC_Rohl
, core::scoring::SmallAtNb
, core::scoring::rna::RNA_Datum
, protocols::abinitio::PairingStatEntry
, protocols::abinitio::PairingStatistics
, protocols::simple_moves::symmetry::SetupNCSMover
, protocols::topology_broker::weights::AbinitioMoverWeight
, protocols::topology_broker::weights::ConstAbinitioMoverWeight
, protocols::topology_broker::weights::LargeFragWeight
, protocols::topology_broker::weights::SmallFragWeight
, protocols::topology_broker::weights::SmoothFragWeight
, core::scoring::sc::MolecularSurfaceCalculator
, core::chemical::Element
, core::io::silent::SilentEnergy
, core::scoring::CSA
, core::scoring::constraints::SequenceProfileConstraint
, core::scoring::constraints::TopOutFunc
, core::scoring::DC
, core::scoring::hbonds::HBond
, core::scoring::MinimizationNode
, core::scoring::MinimizationEdge
, core::scoring::AtomNeighbor
, core::scoring::packstat::PackingScore
, core::scoring::RDC
, core::scoring::RDC_Rohl
- weight_
: core::chemical::Element
, core::coarse::Translator::BeadAtom
, core::io::silent::SilentEnergy
, core::scoring::CSA
, core::scoring::constraints::CircularPowerFunc
, core::scoring::constraints::CountViolFunc
, core::scoring::constraints::ScalarWeightedFunc
, core::scoring::constraints::SequenceProfileConstraint
, core::scoring::constraints::SkipViolFunc
, core::scoring::constraints::SplineFunc
, core::scoring::constraints::TopOutFunc
, core::scoring::DC
, core::scoring::electron_density::OneGaussianScattering
, core::scoring::hbonds::HBond
, core::scoring::MinimizationNode
, core::scoring::MinimizationEdge
, core::scoring::AtomNeighbor
, core::scoring::RDC
, core::scoring::RDC_Rohl
, core::scoring::SmallAtNb
, core::scoring::rna::RNA_Datum
, protocols::abinitio::PairingStatEntry
, protocols::fldsgn::potentials::SetAACompositionPotential
, protocols::fldsgn::SheetConstraintsRCG
, protocols::jumping::JumpSelector::JumpWeightDef
, protocols::moves::MoverContainer
, protocols::pockets::PocketConstraint
, protocols::qsar::scoring_grid::GridCreator
, protocols::scoring::methods::pcs::PCS_data_per_lanthanides
, protocols::scoring::methods::pcs::PCS_file_data
, protocols::scoring::methods::pcs2::PcsDataLanthanide
, protocols::scoring::methods::pcs2::PcsInputFile
, protocols::simple_moves::FavorSequenceProfile
, protocols::topology_broker::weights::ConstAbinitioMoverWeight
, protocols::topology_broker::weights::LargeFragWeight
, protocols::topology_broker::weights::SmallFragWeight
, protocols::topology_broker::weights::SmoothFragWeight
- weight_factor_
: protocols::toolbox::IGLigandDesignEdgeUpweighter
, protocols::toolbox::ResidueGroupIGEdgeUpweighter
- weight_func()
: core::scoring::AtomNeighbor
- weight_func_
: core::scoring::AtomNeighbor
- weight_map()
: protocols::toolbox::pose_metric_calculators::EnergiesData
- weight_map_
: protocols::toolbox::pose_metric_calculators::EnergiesData
- WEIGHT_Tab
: protocols::sparta::Sparta::SpartaLib
- weight_type2name_
: core::scoring::hbonds::HBondTypeManager
- weight_type_from_name()
: core::scoring::hbonds::HBondTypeManager
- weight_type_lookup()
: core::scoring::hbonds::HBondDatabase
- weight_type_lookup_
: core::scoring::hbonds::HBondDatabase
- weighted_counts_
: protocols::canonical_sampling::SimulatedTempering
- weighted_energy_map()
: protocols::toolbox::pose_metric_calculators::EnergiesData
- weighted_energy_map_vector()
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- weighted_sampler_
: protocols::canonical_sampling::MetropolisHastingsMover
, protocols::hybridization::WeightedFragmentSmoothTrialMover
, protocols::hybridization::WeightedFragmentTrialMover
- weighted_string_of()
: core::scoring::EMapVector
- weighted_total()
: protocols::toolbox::pose_metric_calculators::EnergiesData
, protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- weighted_total_
: core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator
, protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- weighted_total_no_master()
: protocols::toolbox::pose_metric_calculators::EnergiesData
- weighted_total_no_master_vector()
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- weighted_total_vector()
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- WeightedFragmentSmoothTrialMover()
: protocols::hybridization::WeightedFragmentSmoothTrialMover
- WeightedFragmentTrialMover()
: protocols::hybridization::WeightedFragmentTrialMover
- weightFileName
: protocols::sparta::Sparta::SpartaLib
- WeightMap
: protocols::jd2::archive::EvaluatedArchive
- WeightRangeConstraint()
: protocols::optimize_weights::WeightRangeConstraint
- weights()
: core::scoring::Energies
, core::scoring::ScoreFunction
, protocols::jd2::archive::EvaluatedArchive
, protocols::moves::MoverContainer
- Weights
: protocols::abinitio::PairingStatistics
- weights_
: core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator
, core::scoring::constraints::SOGFunc_Impl
, core::scoring::constraints::USOGFunc
, core::scoring::disulfides::Cb_Distance_Func
, core::scoring::etable::BaseEtableEnergy< Derived >
, core::scoring::hbonds::HBondEnergy
, core::scoring::methods::ReferenceEnergyNoncanonical
, core::scoring::packstat::PackingScore
, core::scoring::ScoreFunction
, protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD
, protocols::canonical_sampling::SimulatedTempering
, protocols::filters::IfThenFilter
, protocols::frag_picker::CompareByScoreCombination
, protocols::frag_picker::DiversifyCrmsdByClustering
, protocols::frag_picker::DiversifyCrmsdSelector
, protocols::frag_picker::quota::ABEGO_SS_Pool
, protocols::frag_picker::quota::SecondaryStructurePool
, protocols::frag_picker::scores::FragmentAllAtomCrmsd
, protocols::frag_picker::scores::FragmentCrmsd
, protocols::frag_picker::scores::FragmentCrmsdResDepth
, protocols::frag_picker::scores::FragmentDME
, protocols::sic_dock::CBScore
, protocols::sic_dock::JointScore
, protocols::toolbox::DecoySetEvaluation
- well_depth()
: core::scoring::constraints::SquareWell2Func
, core::scoring::constraints::SquareWellFunc
- well_depth_
: core::scoring::constraints::FadeFunc
, core::scoring::constraints::LinearPenaltyFunction
, core::scoring::constraints::SquareWell2Func
, core::scoring::constraints::SquareWellFunc
- well_depth_burial_
: core::scoring::rna::RNA_DataBackboneEnergy
- well_depth_exposed_
: core::scoring::rna::RNA_DataBackboneEnergy
- well_offset_
: core::scoring::constraints::FadeFunc
- wfa_atr()
: protocols::match::output::MatchCollisionFilter
- wfa_atr_
: protocols::match::output::MatchCollisionFilter
- wfa_rep()
: protocols::match::output::MatchCollisionFilter
- wfa_rep_
: protocols::match::output::MatchCollisionFilter
- wfa_sol()
: protocols::match::output::MatchCollisionFilter
- wfa_sol_
: protocols::match::output::MatchCollisionFilter
- whatIsTooSmall()
: protocols::pockets::PocketGrid
- where_is_line()
: protocols::scoring::methods::pcs::PCS_data
, protocols::scoring::methods::pcs2::PcsDataCenter
- which_chain()
: protocols::fldsgn::CircularPermutation
, protocols::swa::StepWisePoseSetup
- which_chain_has_moving_res()
: protocols::swa::StepWiseJobParameters
- which_chain_has_moving_res_
: protocols::swa::StepWiseJobParameters
- which_chi_
: core::pack::task::EX
- which_component_
: core::scoring::constraints::MinMultiHarmonicFunc
- which_cst_being_processed_
: protocols::match::output::UpstreamHitCacher
- which_geom_cst_
: protocols::match::TaskOperationMPM
- which_jump_
: protocols::swa::protein::StepWiseProteinJumpSampleGenerator
, protocols::swa::protein::StepWiseProteinResidueSampler
- which_netstate_worst_top_
: core::pack::annealer::MultiCoolAnnealer
- which_node()
: core::pack::interaction_graph::EdgeBase
- which_point_for_atom()
: protocols::match::upstream::UpstreamResTypeGeometry
- which_point_for_atom_
: protocols::match::upstream::UpstreamResTypeGeometry
- which_scratch_res_is_cut_
: protocols::coarse_rna::CoarseRNA_LoopCloser
- which_sheet()
: protocols::fldsgn::topology::SheetSet
- which_side
: core::scoring::rna::Base_stack
, protocols::fldsgn::topology::Sheet
- which_top_entity()
: protocols::pack_daemon::MultistateFitnessFunction
- which_torsions()
: protocols::swa::protein::StepWiseProteinCCD_Closer
, protocols::swa::protein::StepWiseProteinLoopBridger
, protocols::swa::protein::StepWiseProteinScreener
- which_torsions_
: protocols::swa::protein::StepWiseProteinCCD_Closer
, protocols::swa::protein::StepWiseProteinLoopBridger
, protocols::swa::protein::StepWiseProteinMainChainSampleGenerator
, protocols::swa::protein::StepWiseProteinResidueSampler
- WhileMover()
: protocols::moves::WhileMover
- whoami()
: protocols::toolbox::KCluster
, protocols::toolbox::KMedoid
, protocols::toolbox::GreedyKCenter
- whole_interface_
: protocols::simple_filters::EnergyPerResidueFilter
, protocols::simple_filters::ResidueIEFilter
- whole_line
: core::scoring::packstat::SimplePDB_Atom
- whole_pose_
: protocols::enzdes::EnzScoreFilter
, protocols::simple_filters::ResidueIEFilter
- whole_pose_context_enmeths_
: core::scoring::MinimizationGraph
- whole_pose_context_enmeths_begin()
: core::scoring::MinimizationGraph
- whole_pose_context_enmeths_end()
: core::scoring::MinimizationGraph
- whole_struct_cluster_radius_
: protocols::swa::rna::StepWiseRNA_Clusterer
- whole_structure_types()
: core::scoring::ScoreFunction
- WholeBodyRotationMover()
: protocols::rigid::WholeBodyRotationMover
- WholeBodyTranslationMover()
: protocols::rigid::WholeBodyTranslationMover
- WholeStructureEnergy()
: core::scoring::methods::WholeStructureEnergy
- WholeStructureMoveSet_
: protocols::rbsegment_relax::RBSegmentRelax
- WholeWholeEnergyInvoker()
: core::scoring::etable::WholeWholeEnergyInvoker< Evaluator >
- WI_1
: protocols::sparta::ANN
- WI_2
: protocols::sparta::ANN
- WI_3
: protocols::sparta::ANN
- wide_move_tolerance_sqr_
: core::scoring::NeighborList
- wide_nblist_
: core::scoring::NeighborList
- wide_nblist_extension_
: core::scoring::NeighborList
- wide_reference_coords_
: core::scoring::NeighborList
- widget_name()
: protocols::genetic_algorithm::EntityElementCreator
, protocols::multistate_design::PosTypeCreator
- width
: core::scoring::rna::Gaussian_parameter
, core::io::silent::SilentEnergy
, core::sequence::SequenceProfile
- width_
: protocols::qsar::scoring_grid::GridManager
, protocols::viewer::ConformationViewer
, core::io::silent::SilentEnergy
, protocols::frag_picker::scores::FragmentScoreManager
- WidthFirstSlidingWindowLoopClosure()
: protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
- wiggle_cdr_h3_
: protocols::antibody2::H3RefineCCD
- wildcard_mm_bondangle_library_
: core::scoring::mm::MMBondAngleLibrary
- wildcard_mm_torsion_library_
: core::scoring::mm::MMTorsionLibrary
- WildcardMatch()
: core::scoring::sc::MolecularSurfaceCalculator
- wind_down_simulation()
: protocols::canonical_sampling::MetropolisHastingsMover
- window()
: protocols::viewer::ConformationViewer
- WINDOW_
: core::scoring::electron_density::ElectronDensity
- window_
: protocols::noesy_assign::FoldResonance
- window_acceptance_ratio_
: protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
- window_size_
: protocols::loophash::LoopHashDiversifier
- WindowList
: protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
- winning_address_
: protocols::canonical_sampling::mc_convergence_checks::DataBuffer
- winning_ranks_
: protocols::canonical_sampling::mc_convergence_checks::TransferBuffer
, protocols::canonical_sampling::mc_convergence_checks::DataBuffer
- winning_tag_
: protocols::canonical_sampling::mc_convergence_checks::DataBuffer
- wipe()
: core::pack::interaction_graph::LinearMemEdge
, core::pack::interaction_graph::SymmLinearMemEdge
, core::pack::interaction_graph::SymmMinimalistEdge
- wipe_out_moving_residues()
: protocols::swa::monte_carlo::RNA_DeleteMover
- wipe_two_body_energies_for_node_state()
: core::pack::interaction_graph::DoubleLazyEdge
, core::pack::interaction_graph::LazyEdge
- within1bonds_sets_for_atom()
: core::chemical::ResidueType
- within1bonds_sets_for_atom_
: core::chemical::ResidueType
- within2bonds_sets_for_atom()
: core::chemical::ResidueType
- within2bonds_sets_for_atom_
: core::chemical::ResidueType
- within_reach()
: protocols::match::HitNeighborFinder
- without_my_constraints()
: protocols::ligand_docking::ResidueTorsionRestraints
- WL1_1
: protocols::sparta::ANN
- WL1_2
: protocols::sparta::ANN
- WL1_3
: protocols::sparta::ANN
- WL2_1
: protocols::sparta::ANN
- WL2_2
: protocols::sparta::ANN
- WL2_3
: protocols::sparta::ANN
- WobbleMover()
: protocols::simple_moves::WobbleMover
- work_dir_
: protocols::simple_filters::ExternalEvaluator
- work_unit_list()
: protocols::wum::WorkUnitManager
- work_unit_list_
: protocols::wum::WorkUnitList
, protocols::wum::WorkUnitManager
- worker_finish_summary()
: protocols::boinc::Boinc
- worker_initialized_
: protocols::boinc::Boinc
- worker_is_finished()
: protocols::boinc::Boinc
- worker_running_
: protocols::boinc::Boinc
- worker_shutdown()
: protocols::boinc::Boinc
- worker_startup()
: protocols::boinc::Boinc
- workers_finished()
: protocols::canonical_sampling::mc_convergence_checks::MPIBPool_RMSD
- workers_finished_
: protocols::canonical_sampling::mc_convergence_checks::MPIBPool_RMSD
- working_align_pose_
: protocols::swa::StepWisePoseSetup
- working_align_res
: protocols::swa::rna::VDW_RepScreeninfo
- working_best_alignment()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_best_alignment_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_bridge_res()
: protocols::swa::StepWiseJobParameters
- working_bridge_res_
: protocols::swa::protein::StepWiseProteinCCD_Closer
, protocols::swa::protein::StepWiseProteinLoopBridger
, protocols::swa::StepWiseJobParameters
- working_calc_rms_res()
: protocols::swa::StepWiseJobParameters
- working_calc_rms_res_
: protocols::swa::StepWiseJobParameters
- working_fixed_res()
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_fixed_res_
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_force_north_ribose_list()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_force_north_ribose_list_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_force_south_ribose_list()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_force_south_ribose_list_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_force_syn_chi_res_list()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_force_syn_chi_res_list_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_global_sample_res_list()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_global_sample_res_list_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_model_
: protocols::forge::remodel::RemodelAccumulator
, protocols::forge::remodel::RemodelDesignMover
, protocols::forge::remodel::RemodelMover
- working_moving_partition_pos()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_moving_partition_pos_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_moving_res()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_moving_res_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_moving_res_list()
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_moving_res_list_
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_moving_suite()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_moving_suite_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_moving_suite_list()
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_moving_suite_list_
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_native_alignment()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_native_alignment_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_native_pose
: protocols::swa::StepWisePoseSetup
, protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_native_pose_
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_protonated_H1_adenosine_list()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_protonated_H1_adenosine_list_
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_reference_res()
: protocols::swa::rna::StepWiseRNA_JobParameters
- working_res_list()
: protocols::swa::StepWiseJobParameters
- working_res_list_
: protocols::swa::StepWiseJobParameters
- working_rmsd_res_
: protocols::swa::rna::StepWiseRNA_AnalyticalLoopCloseSampler
, protocols::swa::rna::StepWiseRNA_ResidueSampler
- working_sequence()
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_sequence_
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_set_size_
: protocols::boinc::Boinc
- working_set_size_max_val_
: protocols::boinc::Boinc
- working_superimpose_res()
: protocols::swa::StepWiseJobParameters
- working_superimpose_res_
: protocols::swa::StepWiseJobParameters
- working_terminal_res()
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_terminal_res_
: protocols::swa::rna::StepWiseRNA_JobParameters
, protocols::swa::StepWiseJobParameters
- working_to_sliced_res_map_
: protocols::swa::rna::SlicedPoseJobParameters
- WorkingRemodelSet()
: protocols::forge::remodel::WorkingRemodelSet
- workingSetGen()
: protocols::forge::remodel::WorkingRemodelSet
- WorkUnit()
: protocols::wum2::WorkUnit
- WorkUnit_BatchRelax()
: protocols::relax::WorkUnit_BatchRelax
- WorkUnit_BatchRelax_and_PostRescore()
: protocols::relax::WorkUnit_BatchRelax_and_PostRescore
- WorkUnit_ElScripts()
: protocols::wum2::WorkUnit_ElScripts
- WorkUnit_LoopHash()
: protocols::loophash::WorkUnit_LoopHash
- WorkUnit_MoverWrapper()
: protocols::wum::WorkUnit_MoverWrapper
- WorkUnit_SilentStructStore()
: protocols::wum::WorkUnit_SilentStructStore
- WorkUnit_Wait()
: protocols::wum::WorkUnit_Wait
, protocols::wum2::WorkUnit_Wait
- WorkUnitBase()
: protocols::wum::WorkUnitBase
- WorkUnitList()
: protocols::wum::WorkUnitList
- WorkUnitManager
: protocols::wum::WorkUnitBase
, protocols::wum::WorkUnitManager
- WorkUnitQueue
: protocols::wum::WorkUnitBase
, protocols::wum::WorkUnitQueue
- WorkUnitQueue_Swapped
: protocols::wum::WorkUnitManager
, protocols::wum::WorkUnitQueue_Swapped
- worst_
: protocols::frag_picker::BoundedPriorityQueue< T, StrictWeakOrdering >
, protocols::frag_picker::LazySortedVector1< T, StrictWeakOrdering >
- worst_allowed_stub_bonus_
: protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover
, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
- worst_combine_score_
: protocols::swa::rna::StepWiseRNA_CombineLongLoopFilterer
- worst_top_energy_
: core::pack::annealer::MultiCoolAnnealer
- Wradius
: core::scoring::etable::Etable
, core::scoring::etable::EtableOptions
, core::scoring::etable::MembEtable
- wrapped_opt_min_
: protocols::optimize_weights::IterativeOptEDriver
- wrapped_phipsi_bins_
: protocols::match::VoxelSetIterator
- wrapped_phipsi_halfbins_
: protocols::match::VoxelSetIterator
- WrappedOptEExpressionCreator()
: protocols::optimize_weights::WrappedOptEExpressionCreator
- WrapperOptEMultifunc()
: protocols::optimize_weights::WrapperOptEMultifunc
- write()
: protocols::outputter::SilentFileOutputter
, protocols::outputter::Outputter
, protocols::frag_picker::CSTalosIO
, core::grid::CartGrid< T >
, core::io::serialization::BUFFER
, protocols::frag_picker::LAMBEGO_IO
, protocols::frag_picker::PhiPsiTalosIO
, protocols::frag_picker::TorsionBinIO
, protocols::outputter::FormatStringOutputter
, protocols::outputter::Outputter
, protocols::outputter::PDBOutputter
, protocols::outputter::ResFileOutputter
- write2pdb()
: protocols::simple_filters::RotamerBoltzmannWeight
, protocols::protein_interface_design::filters::SequenceRecoveryFilter
, protocols::simple_filters::RotamerBoltzmannWeight
- write2pdb_
: protocols::protein_interface_design::filters::SequenceRecoveryFilter
, protocols::simple_filters::RotamerBoltzmannWeight
- write_3Dprojection_kinemage()
: protocols::match::OccupiedSpaceHash
- write_all()
: core::io::raw_data::RawFileData
, core::io::silent::SilentFileData
, protocols::hotspot_hashing::HotspotStubSet
- write_all_structs()
: protocols::jd2::SilentFileJobOutputter
- write_apolar_hydrogens()
: core::conformation::ResidueKinWriter
- write_apolar_hydrogens_
: core::conformation::ResidueKinWriter
- write_assignment()
: protocols::noesy_assign::PeakFileFormat_xpk
, protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
- write_assignment_indent()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
- write_assignment_stats()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
- write_assignments()
: protocols::noesy_assign::NoesyModule
, protocols::noesy_assign::PeakFileFormat_Base
, protocols::noesy_assign::PeakFileFormat
- write_atom_in_residue_pairs_table_schema()
: protocols::features::AtomInResidueAtomInResiduePairFeatures
- write_atom_names()
: protocols::noesy_assign::PeakFileFormat
- write_atom_names_
: protocols::noesy_assign::PeakFileFormat
- write_atom_pairs_table_schema()
: protocols::features::AtomAtomPairFeatures
- write_atom_type_extra_parameters_table()
: core::chemical::AtomTypeDatabaseIO
- write_atom_type_extra_parameters_table_schema()
: core::chemical::AtomTypeDatabaseIO
- write_atom_type_properties_table()
: core::chemical::AtomTypeDatabaseIO
- write_atom_type_properties_table_schema()
: core::chemical::AtomTypeDatabaseIO
- write_atom_type_property_values_table_schema()
: core::chemical::AtomTypeDatabaseIO
- write_atom_type_set_to_database()
: core::chemical::AtomTypeDatabaseIO
- write_atom_type_table()
: core::chemical::AtomTypeDatabaseIO
- write_atom_types_table_schema()
: core::chemical::AtomTypeDatabaseIO
- write_atompot
: core::scoring::APBSConfig::I_PARAM
- write_backbone_hydrogens()
: core::conformation::ResidueKinWriter
- write_backbone_hydrogens_
: core::conformation::ResidueKinWriter
- write_batch_reports_table()
: protocols::features::ReportToDB
- write_beta_turns_table_schema()
: protocols::features::BetaTurnDetectionFeatures
- write_binary_fa_dunbrack_libraries()
: core::pack::dunbrack::RotamerLibrary
- write_binary_fa_dunbrack_libraries_02()
: core::pack::dunbrack::RotamerLibrary
- write_binary_fa_dunbrack_libraries_10()
: core::pack::dunbrack::RotamerLibrary
- write_bond_interres_angles_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_interres_lengths_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_intrares_angles_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_intrares_lengths_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_intrares_torsions_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_charge
: core::scoring::APBSConfig::I_PARAM
- write_checkpoint()
: protocols::forge::remodel::RemodelAccumulator
, protocols::frag_picker::nonlocal::NonlocalFrags
, protocols::genetic_algorithm::Entity
, protocols::multistate_design::MultiStateEntity< T >
, protocols::multistate_design::SingleStateEntityData
- write_circle_intersection_mask_to_kinemage()
: core::pack::interaction_graph::InvRotamerDots
- write_colors()
: protocols::qsar::RenderGridsToKinemage
- write_comment()
: core::io::silent::SilentFileData
- write_config()
: core::scoring::PoissonBoltzmannPotential
- write_constraints()
: core::scoring::constraints::ConstraintIO
- write_coords()
: core::conformation::ConformationKinWriter
- write_current_state_to_state_array()
: protocols::flexpack::interaction_graph::FlexbbNode
- write_data()
: core::fragment::FragmentIO
, protocols::toolbox::match_enzdes_util::ResInteractions
, protocols::toolbox::match_enzdes_util::CstResInteractions
- write_database()
: protocols::branch_angle::BranchAngleOptimizer
- write_db()
: protocols::loophash::BackboneDB
, protocols::loophash::LoopHashMap
- write_decoys_to_hierarchy()
: protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
- write_diel
: core::scoring::APBSConfig::I_PARAM
- write_downstream_coordinates()
: protocols::match::output::DownstreamCoordinateKinemageWriter
, protocols::match::output::SingleDownstreamResidueWriter
- write_eggshell_to_pdb()
: protocols::pockets::EggshellGrid
- write_eggshell_to_pdb_file()
: protocols::pockets::NonPlaidFingerprint
- write_empty_voxels_
: protocols::match::Bool3DGridKinemageWriter
- write_entities_checkpoint()
: protocols::genetic_algorithm::GeneticAlgorithm
- write_exposed_dots_to_kinemage()
: core::pack::interaction_graph::InvRotamerDots
- write_facets_
: protocols::match::Bool3DGridKinemageWriter
- write_features_reporters_table()
: protocols::features::ReportToDB
- write_full_report()
: protocols::features::ProteinSilentReport
- write_generations_checkpoint()
: protocols::genetic_algorithm::GeneticAlgorithm
- write_geometric_solvation_table_schema()
: protocols::features::GeometricSolvationFeatures
- write_grid_to_file()
: protocols::match::Bool3DGridKinemageWriter
- write_grid_to_kinemage()
: protocols::match::Bool3DGridKinemageWriter
- write_grid_to_pdb()
: protocols::pockets::EggshellGrid
- write_grids()
: protocols::qsar::scoring_grid::GridManager
- write_HARO_orbital_table_schema()
: protocols::features::OrbitalsFeatures
- write_hbond_chem_types_table_schema()
: protocols::features::HBondFeatures
- write_hbond_dehydrons_table_schema()
: protocols::features::HBondFeatures
- write_hbond_evaluation_types_table_schema()
: core::scoring::hbonds::HBondDatabase
- write_hbond_fade_interval_table_schema()
: core::scoring::hbonds::HBondDatabase
- write_hbond_geom_coords_table_schema()
: protocols::features::HBondFeatures
- write_hbond_lennard_jones_table_schema()
: protocols::features::HBondFeatures
- write_hbond_polynomial_1d_table_schema()
: core::scoring::hbonds::HBondDatabase
- write_hbond_site_atoms_table_schema()
: protocols::features::HBondFeatures
- write_hbond_site_environment_table_schema()
: protocols::features::HBondFeatures
- write_hbond_sites_pdb_table_schema()
: protocols::features::HBondFeatures
- write_hbond_sites_table_schema()
: protocols::features::HBondFeatures
- write_hbonds_table_schema()
: protocols::features::HBondFeatures
- write_header()
: protocols::noesy_assign::PeakFileFormat_Base
, protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
, protocols::qsar::RenderGridsToKinemage
, protocols::rotamer_recovery::RRReporterHuman
- write_headers_to_hierarchy()
: protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
, protocols::canonical_sampling::mc_convergence_checks::HierarchicalLevel
- write_HPOL_orbital_table_schema()
: protocols::features::OrbitalsFeatures
- write_hydrogens()
: core::conformation::ResidueKinWriter
- write_info_file()
: protocols::jd2::archive::Batch
- write_int_area_
: protocols::simple_filters::ShapeComplementarityFilter
- write_kappa
: core::scoring::APBSConfig::I_PARAM
- write_kin_header()
: core::conformation::ResidueKinWriter
- write_lines()
: protocols::jd2::SingleFileBuffer
, protocols::jd2::WriteFileSFB
- write_linking_tables()
: protocols::features::ReportToDB
- write_loop_anchor_transforms_table_schema()
: protocols::features::LoopAnchorFeatures
- write_loop_anchor_transforms_three_res_table_schema()
: protocols::features::LoopAnchorFeatures
- write_loop_anchors_table_schema()
: protocols::features::LoopAnchorFeatures
- write_loops_to_file()
: protocols::loops::Loops
- write_loops_to_stream()
: protocols::loops::Loops
- write_match_groups()
: protocols::match::output::CloudPDBWriter
- write_matchres_only_
: protocols::match::output::PDBWriter
- write_model()
: protocols::canonical_sampling::PDBTrajectoryRecorder
, protocols::canonical_sampling::TrajectoryRecorder
, protocols::canonical_sampling::MetricRecorder
, protocols::canonical_sampling::SilentTrajectoryRecorder
- write_mse_summary()
: protocols::simple_moves::DOFHistogramRecorder
- write_nchi_table_schema()
: protocols::rotamer_recovery::RRReporterSQLite
- write_new_scorefile()
: protocols::optimize_weights::IterativeOptEDriver
- write_nil_assignment()
: protocols::noesy_assign::PeakFileFormat_xpk
, protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
- write_only_highest_VC()
: protocols::noesy_assign::PeakFileFormat_Base
- write_only_highest_VC_
: protocols::noesy_assign::PeakFileFormat_Base
- write_orbital_orbital_table_schema()
: protocols::features::OrbitalsFeatures
- write_parameters_to_std_out()
: protocols::optimize_weights::IterativeOptEDriver
- write_peak()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_xpk
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_Base
- write_peak_files()
: protocols::noesy_assign::CrossPeakList
- write_points()
: protocols::qsar::RenderGridsToKinemage
- write_polar_hydrogens()
: core::conformation::ResidueKinWriter
- write_polar_hydrogens_
: core::conformation::ResidueKinWriter
- write_pose()
: core::io::raw_data::DecoyFileData
, core::io::raw_data::ScoreFileData
, core::import_pose::pose_stream::PoseOutputStream
- write_pot
: core::scoring::APBSConfig::I_PARAM
- write_pqr()
: core::scoring::PoissonBoltzmannPotential
- write_protein_backbone_atom_atom_pairs_table_schema()
: protocols::features::ProteinBackboneAtomAtomPairFeatures
- write_protein_backbone_torsion_angles_table_schema()
: protocols::features::ProteinBackboneTorsionAngleFeatures
- write_protein_rmsd_table_schema()
: protocols::features::ProteinRMSDFeatures
- write_protocol_report()
: protocols::features::ProteinSilentReport
- write_psipred_ss2()
: core::fragment::SecondaryStructure
- write_pymol_script()
: protocols::flxbb::LayerDesignOperation
- write_queue()
: protocols::wum::WorkUnitManager
- write_queues_to_file()
: protocols::wum::WorkUnitManager
- write_radius_of_gyration_table_schema()
: protocols::features::RadiusOfGyrationFeatures
- write_rama_score_all()
: core::scoring::Ramachandran
, core::scoring::Ramachandran2B
- write_residue_burial_table_schema()
: protocols::features::ResidueBurialFeatures
- write_residue_pairs_table_schema()
: protocols::features::PairFeatures
- write_residue_rotamers_table_schema()
: protocols::features::RotamerFeatures
- write_residue_scores_1b_table_schema()
: protocols::features::ResidueScoresFeatures
- write_residue_scores_2b_table_schema()
: protocols::features::ResidueScoresFeatures
- write_residue_scores_lr_2b_table_schema()
: protocols::features::ResidueScoresFeatures
- write_residue_total_scores_table_schema()
: protocols::features::ResidueTotalScoresFeatures
- write_residue_type_atom_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_bond_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_chi_rotamer_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_chi_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_cut_bond_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_icoor_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_property_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_proton_chi_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residue_type_variant_type_table_schema()
: core::chemical::ResidueDatabaseIO
- write_residuetype_to_database()
: core::chemical::ResidueDatabaseIO
- write_resonances()
: protocols::noesy_assign::PeakFileFormat_Base
, protocols::noesy_assign::PeakFileFormat
- write_rotamer_boltzmann_weight_table_schema()
: protocols::features::RotamerBoltzmannWeightFeatures
- write_rotamer_recovery_features_table_schema()
: protocols::rotamer_recovery::RRReporterSQLite
- write_rotamer_recovery_full_table_schema()
: protocols::rotamer_recovery::RRReporterSQLite
- write_rsd_coords()
: protocols::match::output::ResidueKinemageWriter
, core::conformation::ResidueKinWriter
- write_salt_bridges_table_schema()
: protocols::features::SaltBridgeFeatures
- write_schema_to_db()
: protocols::features::BatchFeatures
, protocols::rotamer_recovery::RRReporterSQLite
, protocols::features::ResidueGridScoresFeatures
, protocols::features::ProteinRMSDFeatures
, protocols::features::SaltBridgeFeatures
, protocols::features::ScoreFunctionFeatures
, protocols::features::ChargeChargeFeatures
, protocols::features::helixAssembly::HelixBundleFeatures
, protocols::features::FeaturesReporter
, protocols::features::HBondParameterFeatures
, protocols::features::LoopAnchorFeatures
, protocols::features::RotamerBoltzmannWeightFeatures
, core::chemical::AtomTypeDatabaseIO
, protocols::features::ProteinBondGeometryFeatures
, protocols::features::ProteinResidueConformationFeatures
, protocols::features::ProteinBackboneAtomAtomPairFeatures
, protocols::features::PairFeatures
, protocols::features::ResidueFeatures
, protocols::features::ResidueScoresFeatures
, protocols::features::ResidueTotalScoresFeatures
, protocols::features::RotamerRecoveryFeatures
, protocols::features::ResidueConformationFeatures
, protocols::features::SecondaryStructureSegmentFeatures
, protocols::features::StructureScoresFeatures
, protocols::features::ResidueBurialFeatures
, protocols::features::PdbDataFeatures
, protocols::features::PoseCommentsFeatures
, protocols::features::ProteinBackboneTorsionAngleFeatures
, protocols::features::PoseConformationFeatures
, core::chemical::ResidueDatabaseIO
, protocols::features::HBondFeatures
, protocols::features::OrbitalsFeatures
, protocols::features::JobDataFeatures
, protocols::features::helixAssembly::ConcurrencyTest
, protocols::features::AtomAtomPairFeatures
, protocols::features::GeometricSolvationFeatures
, protocols::features::StructureFeatures
, protocols::features::AtomInResidueAtomInResiduePairFeatures
, protocols::features::BetaTurnDetectionFeatures
, protocols::features::AtomTypesFeatures
, protocols::features::SmotifFeatures
, protocols::features::UnrecognizedAtomFeatures
, protocols::features::strand_assembly::StrandBundleFeatures
, protocols::features::ResidueSecondaryStructureFeatures
, protocols::features::ScoreTypeFeatures
, protocols::features::RadiusOfGyrationFeatures
, protocols::features::ResidueTypesFeatures
, protocols::features::ProteinSilentReport
, protocols::features::ProtocolFeatures
, protocols::features::RotamerFeatures
- write_score_function_method_options_table_schema()
: core::scoring::methods::EnergyMethodOptions
- write_score_function_weights_table_schema()
: protocols::features::ScoreFunctionFeatures
- write_scorefile()
: protocols::jd2::FileJobOutputter
- write_scorefile_
: protocols::jd2::FileJobOutputter
- write_separate_scorefile_
: protocols::jd2::SilentFileJobOutputter
- write_silent_struct()
: core::conformation::symmetry::SymmetryInfo
, core::io::silent::SilentFileData
- write_smol
: core::scoring::APBSConfig::I_PARAM
- write_strength()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Base
- write_struct()
: core::io::raw_data::ScoreFileData
, core::io::raw_data::DecoyFileData
- write_stub()
: protocols::hotspot_hashing::HotspotStubSet
- write_summary()
: protocols::frag_picker::QuotaDebug
- write_talos_format()
: protocols::noesy_assign::ResonanceList
- write_to_binary()
: core::pack::dunbrack::SingleResidueDunbrackLibrary
, core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T >
, core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T >
, core::pack::dunbrack::RotamerLibrary
- write_to_binary_file()
: protocols::optimize_weights::NestedEnergyTermPNatAAOptEPositionData
, protocols::optimize_weights::PSSMOptEPositionData
, protocols::optimize_weights::ConstraintedOptimizationWeightFunc
, protocols::optimize_weights::DGBindOptEData
, protocols::optimize_weights::OptEData
, protocols::optimize_weights::DDGMutationOptEData
, protocols::optimize_weights::OptEPositionData
, protocols::optimize_weights::PNatAAOptEPositionData
, protocols::optimize_weights::PNatStructureOptEData
, protocols::optimize_weights::PNatRotOptEPositionData
, protocols::optimize_weights::DDGBindOptEData
- write_to_BRIX()
: core::grid::CartGrid< T >
- write_to_compact_array()
: core::pack::interaction_graph::DotSphere
, core::pack::interaction_graph::RotamerDotsCache
- write_to_file()
: protocols::optimize_weights::DGBindOptEData
, protocols::optimize_weights::OptEPositionData
, protocols::optimize_weights::PNatStructureOptEData
, protocols::optimize_weights::PNatRotOptEPositionData
, protocols::optimize_weights::DDGMutationOptEData
, protocols::optimize_weights::NestedEnergyTermPNatAAOptEPositionData
, core::pack::dunbrack::CoarseSingleResidueLibrary
, protocols::noesy_assign::FragsToAtomDist
, core::pack::dunbrack::SingleResidueRotamerLibrary
, protocols::optimize_weights::PSSMOptEPositionData
, protocols::optimize_weights::ConstraintedOptimizationWeightFunc
, protocols::contact_map::ContactMap
, core::pack::dunbrack::SingleLigandRotamerLibrary
, protocols::canonical_sampling::TemperingBase
, protocols::canonical_sampling::SimulatedTempering
, protocols::optimize_weights::PNatAAOptEPositionData
, core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T >
, core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T >
, core::pack::dunbrack::RotamerLibrary
, protocols::optimize_weights::DDGBindOptEData
, protocols::canonical_sampling::MultiTemperatureTrialCounter
, protocols::optimize_weights::OptEData
- write_to_file_
: protocols::swa::rna::StepWiseRNA_VDW_Bin_Screener
- write_to_pdb()
: protocols::protein_interface_design::filters::SequenceRecoveryFilter
, protocols::simple_filters::RotamerBoltzmannWeight
- write_to_stream()
: protocols::noesy_assign::Resonance
, protocols::noesy_assign::FloatingResonance
, protocols::noesy_assign::ResonanceList
, protocols::noesy_assign::CrossPeakList
, protocols::noesy_assign::Resonance
, protocols::noesy_assign::FloatingResonance
, protocols::noesy_assign::FragsToAtomDist
- write_undefined_coef1()
: protocols::branch_angle::BranchAngleOptimizer
- write_undefined_coef2()
: protocols::branch_angle::BranchAngleOptimizer
- write_unrecognized_atoms_table_schema()
: protocols::features::UnrecognizedAtomFeatures
- write_unrecognized_neighbors_table_schema()
: protocols::features::UnrecognizedAtomFeatures
- write_unrecognized_residues_table_schema()
: protocols::features::UnrecognizedAtomFeatures
- write_virtual_atoms()
: protocols::match::output::ResidueKinemageWriter
, core::conformation::ResidueKinWriter
, protocols::match::output::WriteUpstreamHitKinemage
, core::conformation::ConformationKinWriter
- write_virtual_atoms_
: core::conformation::ConformationKinWriter
, protocols::match::output::ResidueKinemageWriter
, protocols::match::output::WriteUpstreamHitKinemage
, core::conformation::ResidueKinWriter
- write_work_unit()
: protocols::wum::WorkUnitManager
- WriteFileSFB()
: protocols::jd2::WriteFileSFB
- writeMAT()
: core::scoring::electron_density::ElectronDensity
- writeMRC()
: core::scoring::electron_density::ElectronDensity
- WriteOut_MpiFileBuffer()
: protocols::jd2::WriteOut_MpiFileBuffer
- writer_
: protocols::match::output::MatchProcessor
- WriteUpstreamCoordinateKinemage()
: protocols::match::output::WriteUpstreamCoordinateKinemage
- WriteUpstreamHitKinemage()
: protocols::match::output::WriteUpstreamHitKinemage
- wRMSD()
: protocols::toolbox::DecoySetEvaluation
- WS_MethodIterator
: core::scoring::ScoreFunction
- WS_Methods
: core::scoring::ScoreFunction
- ws_methods_
: core::scoring::ScoreFunction
- ws_methods_begin()
: core::scoring::ScoreFunction
- ws_methods_end()
: core::scoring::ScoreFunction
- wsc_sc_
: core::scoring::hackelec::HackElecEnergy
, core::scoring::hackelec::weight_triple
- wt
: core::scoring::dna::DirectReadoutPotential
- wt_
: protocols::simple_moves::symmetry::SetupNCSMover
, protocols::canonical_sampling::PatchOperation
- wt_aa()
: core::io::PositionDdGInfo::PositionDdGInfo
- wt_aa_
: protocols::optimize_weights::DDGMutationOptEData
, core::io::PositionDdGInfo::PositionDdGInfo
- wt_complexes_
: protocols::optimize_weights::DDGBindOptEData
- WT_COMPLEXES_LIST_FILE
: protocols::optimize_weights::DDGBindOptEData
- wt_components_
: protocols::ddg::ddGMover
- wt_residue_
: protocols::pmut_scan::MutationData
- wt_residue_for_node()
: core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
, core::pack::interaction_graph::SurfaceNode< V, E, G >
, core::pack::interaction_graph::HPatchNode< V, E, G >
- wt_score_components()
: protocols::ddg::ddGMover
- wt_seqpos_for_node()
: core::pack::interaction_graph::HPatchNode< V, E, G >
, core::pack::interaction_graph::SurfaceNode< V, E, G >
- wt_unbound_components_
: protocols::ddg::ddGMover
- wt_unbound_score_components()
: protocols::ddg::ddGMover
- wt_unbounds_
: protocols::optimize_weights::DDGBindOptEData
- WT_UNBOUNDS_LIST_FILE
: protocols::optimize_weights::DDGBindOptEData
- wt_unfolded_energies_emap_
: protocols::optimize_weights::NestedEnergyTermDDGMutationOptEData
- wtD_
: protocols::simple_moves::symmetry::SetupNCSMover
- WtedClones
: core::conformation::symmetry::SymmetryInfo
, core::conformation::symmetry::SymmData
- wts_
: protocols::optimize_weights::DDGMutationOptEData
- wu_desc_buf
: protocols::boinc::BoincSharedMemory
- wu_desc_exists
: protocols::boinc::BoincSharedMemory
- wu_mem_pair
: protocols::wum2::WUQueue
- wu_type_
: protocols::wum::WorkUnitBase::WU_Header
- wum_
: protocols::wum::WorkUnitQueue_Swapped
- WUQueue()
: protocols::wum2::WUQueue
- wus_
: protocols::wum::WorkUnitQueue