Rosetta 3.5
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Related Pages
Here is a list of all related documentation pages:
oAutomatic NOESY assignment Module (noesy_assign)
oCommand lines collection for pilot/public applications
oDocumentation for ab initio protein structure modeling application (AbinitioRelax)
oDocumentation for the InterfaceAnalyzer application
oCommands for the scoring application
o"Documentation for camelid Antibody Modeling"
oDock Design Parser Applications
oDocumentation for the backrub application
oBoinc minirosetta application usage and overview
oDocumentation for the BuildPeptide utility application
oCommands for the cluster application
oDocumentation for comparative modeling of protein structures
oDocumentation for the ddg_monomer application
oDocumentation for the fixed backbone design application, "fixbb"
oDocumentation for using the fixed backbone design application, "fixbb", with the 'hpatch' solubility score term
oDocumentation for the mpi_msd application for performing multistate design and distributing the load with MPI, "mpi_msd"
oDocumentation for the point mutant ("pmut") scan application, pmut_scan_parallel
oDocumentation for redesigning protein surfaces with high net charge
oDocking Prepack protocol (for Docking)
oDocking Protocol (RosettaDock)
oDeprecated Documentation for the enzdes application
oDocumentation for the enzyme design application
oDocumentation for remodeling RNA crystallographic models with electron density constraint (ERRASER: Enumerative Real-Space Refinement ASsitted by Electron density under Rosetta)
oDocumentation for the extract_atomtree_diffs application
oDocumentation for the FlexPepDock application
oDocumentation for fold-and-dock application
oDocumentation for fragment-based ccd loop modeling
oFragment picking documentation for <code>picker</code> application
oDocumentation for the PyRosetta Toolkit GUI
oDocumentation for the Rosetta Flag File Builder GUI
oDocumentation for the hbs_design application
oDocumentation for AnchoredDesign application
oDocumentation for AnchoredPDBCreator application
oAnchorFinder
oDocumentation for kinematic loop modeling
oDocumentation for the ligand_dock application
oDocumentation for the loop modeling application
oDocumentation for the Symmetry Definiton file creation script.
oDocumentation for the Denovo Symmetry Definiton file creation script.
oDocumentation for the match application
oDocumentation for the geometric constraint file format used to specify interaction geometries for matching and enzyme design
oDocumentation for membrane ab initio modeling application
oMetalloprotein ab initio / relax documentation
oDocumentation for mr_protocols application
oDocumentation for the MakeRotLib application
oUSEC Documentation for UnfoldedStateEnergyCalculator application
oDocumentation for next-generation kinematic loop modeling and torsion-restricted sampling
oDocumentation for the oop_design application
oDocumentation for pepspec application
oDocumentation for relax pdb with all-atom constraints / prepare pdb for rosetta with relax
oDocumentation for the prepare_template_for_MR companion script.
oCommands for the relax application
oDocumentation for RosettaRemodel
oDocumentation for RNA assembly with experimental pair-wise constraints, using <em>rna_denovo</em> and <em>rna_helix</em> executables
oDocumentation for RNA 3D structure modeling: <em>rna_denovo</em>, <em>rna_database</em>, <em>rna_extract</em>, <em>rna_score</em>, <em>rna_minimize</em>, and <em>rna_cluster</em> applications
oDocumentation for RNA 3D design: <em>rna_design</em>
oDocumentation for RosettaDNA application
oDocumentation for beta_strand_homodimer_design suite of apps
oDocumentation for the ca_to_allatom application
oDocumentation for doug_dock_design_min_mod2_cal_cal application
oDocumentation for FloppyTail application
oDocumentation for the loops_from_density application
oDocumentation for UBQ_E2_thioester, UBQ_Gp_CYD-CYD, and UBQ_Gp_LYX-Cterm applications
oDocumentation for the sequence_recovery application
oDocumentation for the sequence_tolerance application
oDocumentation for RNA loop modeling (lock-and-key problem) with Stepwise Assembly, using <em>swa_rna_main</em> and <em>swa_rna_util</em> executables
oDocumentation for the symmetric docking application
oDocumentation for RosettaVIP Void Indentification and Packing application
oReviewer's Template
oDocumentation for AppName application
oA Guide to Developing in Rosetta
oList of things you should check in your code before committing it in to svn
oGuidlines on Owning pointers usage
oA Guide to Running and Writing Tests for Rosetta
oA Guide to Using SCons to Build RosettaA Guide to Using SCons to Build Rosetta
oA Guide to Using Subversion on the Command Line
oWriting a Rosetta Application
oFragments Directory
ocore::fragment::picking_old User's Guide.
oAtomTree overview and concepts
oFoldTree overview and concepts
oMovemap file format
oMinimization overview and concepts
oHow to use the PackerTask
oHow to write new resfile commands
oResfile syntax and conventions
oConstraint File Instructions
oScoring Structures with Electron Density
oHydrogen Bond Energy Term
oHow to add a new scoring term.
oSymmetry User's Guide.
oTracer, tool for debug IO
oAn Introduction to Important Rosetta Concepts
oNumeric Library
oObjexxFCL Library
ofull_options_list
oHow to Prepare Ligands for use in Rosetta
oHow to prepare structures for use in Rosetta
oNew job distributor README
oHow to use the PyMOL-Rosetta server
oChanges Need to Achieve Protein and RNA compatability in Rosetta
oHow to make mini robust against malformed PDBs
oA Guide to the Structure of the Rosetta Library
oAn overview page for the src directory of the Rosetta
oTemplate page for Subdirectories of Libraries
oTips for writing doxygen documentation
oTemplate Doxygen Page for Documenting an Application
oTemplate Doxygen Page for New Category of Source Files
oMover test HowTo
oDifferent way to run unit tests.
oHow to create and run scientific tests
oUnit test and Performance test Mini Rosetta Documentation
oUTracer tool for simplifying writings of unit tests
oInterface for SQLite3 Database Library
oUtility Library
\Todo List