core::scoring::PeptideBondedEnergyContainer Class Reference

#include <PeptideBondedEnergyContainer.hh>

Public Member Functions
virtual	~PeptideBondedEnergyContainer ()
virtual LREnergyContainerOP	clone () const
	PeptideBondedEnergyContainer (Size const size_in, utility::vector1< ScoreType > const score_type_in, Size offset_in=0)
virtual bool	empty () const
virtual void	set_num_nodes (Size size_in, Size offset_in=0)
Size	size () const
virtual ResidueNeighborConstIteratorOP	const_neighbor_iterator_begin (int resid) const
virtual ResidueNeighborConstIteratorOP	const_neighbor_iterator_end (int resid) const
virtual ResidueNeighborConstIteratorOP	const_upper_neighbor_iterator_begin (int resid) const
virtual ResidueNeighborConstIteratorOP	const_upper_neighbor_iterator_end (int resid) const
virtual ResidueNeighborIteratorOP	neighbor_iterator_begin (int resid)
virtual ResidueNeighborIteratorOP	neighbor_iterator_end (int resid)
virtual ResidueNeighborIteratorOP	upper_neighbor_iterator_begin (int resid)
virtual ResidueNeighborIteratorOP	upper_neighbor_iterator_end (int resid)
Public Member Functions inherited from core::scoring::LREnergyContainer
virtual	~LREnergyContainer ()
virtual void	set_num_nodes (Size)

Private Attributes
Size	size_
Size	offset_
utility::vector1< ScoreType >	score_types_
utility::vector1 < utility::vector1< Real > >	tables_
utility::vector1< bool >	computed_

Constructor & Destructor Documentation

virtual core::scoring::PeptideBondedEnergyContainer::~PeptideBondedEnergyContainer ( )

inlinevirtual

core::scoring::PeptideBondedEnergyContainer::PeptideBondedEnergyContainer ( Size const  size_in, utility::vector1< ScoreType > const  score_type_in, Size  offset_in = 0  )

inline

References tables_.

Referenced by clone().

Member Function Documentation

virtual LREnergyContainerOP core::scoring::PeptideBondedEnergyContainer::clone ( ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

References PeptideBondedEnergyContainer().

virtual ResidueNeighborConstIteratorOP core::scoring::PeptideBondedEnergyContainer::const_neighbor_iterator_begin ( int  resid ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

References computed_, offset_, score_types_, size_, and tables_.

virtual ResidueNeighborConstIteratorOP core::scoring::PeptideBondedEnergyContainer::const_neighbor_iterator_end ( int  resid ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

References computed_, offset_, score_types_, size_, and tables_.

Referenced by const_upper_neighbor_iterator_end().

virtual ResidueNeighborConstIteratorOP core::scoring::PeptideBondedEnergyContainer::const_upper_neighbor_iterator_begin ( int  resid ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

References computed_, offset_, score_types_, size_, and tables_.

virtual ResidueNeighborConstIteratorOP core::scoring::PeptideBondedEnergyContainer::const_upper_neighbor_iterator_end ( int  resid ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

References const_neighbor_iterator_end().

virtual bool core::scoring::PeptideBondedEnergyContainer::empty ( ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

References size_.

virtual ResidueNeighborIteratorOP core::scoring::PeptideBondedEnergyContainer::neighbor_iterator_begin ( int  resid )

inlinevirtual

Implements core::scoring::LREnergyContainer.

References computed_, offset_, score_types_, size_, and tables_.

virtual ResidueNeighborIteratorOP core::scoring::PeptideBondedEnergyContainer::neighbor_iterator_end ( int  resid )

inlinevirtual

Implements core::scoring::LREnergyContainer.

References computed_, offset_, score_types_, size_, and tables_.

Referenced by upper_neighbor_iterator_end().

virtual void core::scoring::PeptideBondedEnergyContainer::set_num_nodes ( Size  size_in, Size  offset_in = 0  )

inlinevirtual

References computed_, offset_, score_types_, size_, and tables_.

Size core::scoring::PeptideBondedEnergyContainer::size ( ) const

inline

References size_.

virtual ResidueNeighborIteratorOP core::scoring::PeptideBondedEnergyContainer::upper_neighbor_iterator_begin ( int  resid )

inlinevirtual

Implements core::scoring::LREnergyContainer.

References computed_, offset_, score_types_, size_, and tables_.

virtual ResidueNeighborIteratorOP core::scoring::PeptideBondedEnergyContainer::upper_neighbor_iterator_end ( int  resid )

inlinevirtual

Implements core::scoring::LREnergyContainer.

References neighbor_iterator_end().

Member Data Documentation

utility::vector1< bool > core::scoring::PeptideBondedEnergyContainer::computed_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), and upper_neighbor_iterator_begin().

Size core::scoring::PeptideBondedEnergyContainer::offset_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), and upper_neighbor_iterator_begin().

utility::vector1< ScoreType > core::scoring::PeptideBondedEnergyContainer::score_types_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), and upper_neighbor_iterator_begin().

Size core::scoring::PeptideBondedEnergyContainer::size_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), empty(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), size(), and upper_neighbor_iterator_begin().

utility::vector1< utility::vector1< Real > > core::scoring::PeptideBondedEnergyContainer::tables_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), PeptideBondedEnergyContainer(), set_num_nodes(), and upper_neighbor_iterator_begin().

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The documentation for this class was generated from the following file:

• src/core/scoring/PeptideBondedEnergyContainer.hh