APBS_CONFIG_EXT | core::scoring::PoissonBoltzmannPotential | static |
APBS_DX_EXT | core::scoring::PoissonBoltzmannPotential | static |
apbs_path_ | core::scoring::PoissonBoltzmannPotential | private |
APBS_PQR_EXT | core::scoring::PoissonBoltzmannPotential | static |
c2i_ | core::scoring::PoissonBoltzmannPotential | private |
calcenergy_ | core::scoring::PoissonBoltzmannPotential | private |
cart2idx(numeric::xyzVector< core::Real > const &cartX, numeric::xyzVector< core::Real > &idxX) const | core::scoring::PoissonBoltzmannPotential | inline |
config_filename_ | core::scoring::PoissonBoltzmannPotential | private |
DEFAULT_APBS_PATH | core::scoring::PoissonBoltzmannPotential | static |
dx_filename_ | core::scoring::PoissonBoltzmannPotential | private |
eval_PB_energy_residue(core::conformation::Residue const &rsd, Real &PB_energy_residue, Real &PB_energy_backbone, Real &PB_energy_sidechain, Real const &PB_burial_weight) const | core::scoring::PoissonBoltzmannPotential | |
get_potential(ObjexxFCL::FArray3D< core::Real > const &potential, numeric::xyzVector< core::Real > const &cartX) const | core::scoring::PoissonBoltzmannPotential | |
grid_spacing_ | core::scoring::PoissonBoltzmannPotential | private |
i2c_ | core::scoring::PoissonBoltzmannPotential | private |
idx2cart(numeric::xyzVector< Q > const &idxX, numeric::xyzVector< core::Real > &cartX) const | core::scoring::PoissonBoltzmannPotential | inline |
load_APBS_potential() | core::scoring::PoissonBoltzmannPotential | private |
lower_bound() const | core::scoring::PoissonBoltzmannPotential | inline |
lower_bound_ | core::scoring::PoissonBoltzmannPotential | private |
n_grid_ | core::scoring::PoissonBoltzmannPotential | private |
out_of_bounds(numeric::xyzVector< core::Real > const cartX) const | core::scoring::PoissonBoltzmannPotential | inline |
PoissonBoltzmannPotential() | core::scoring::PoissonBoltzmannPotential | |
potential_ | core::scoring::PoissonBoltzmannPotential | private |
pqr_filename_ | core::scoring::PoissonBoltzmannPotential | private |
solve_pb(core::pose::Pose const &pose, std::string const &state_tag, std::map< std::string, bool > const &is_residue_charged_by_name) | core::scoring::PoissonBoltzmannPotential | |
upper_bound() const | core::scoring::PoissonBoltzmannPotential | inline |
upper_bound_ | core::scoring::PoissonBoltzmannPotential | private |
write_config(core::pose::Pose const &pose) const | core::scoring::PoissonBoltzmannPotential | private |
write_pqr(core::pose::Pose const &pose, std::map< std::string, bool > const &is_residue_charged_by_name) const | core::scoring::PoissonBoltzmannPotential | private |
~PoissonBoltzmannPotential() | core::scoring::PoissonBoltzmannPotential | virtual |