PIKAA allows residues specifed in a following string and packing. More...

#include <ResfileReader.hh>

Public Member Functions
virtual ResfileCommandOP	clone () const

virtual void	initialize_from_tokens (utility::vector1< std::string > const &tokens, Size &which_token, Size resid)
	PIKAA allows residues specifed in a following string and packing the string should be formatted ALLCAPS with no spaces between residues using the standard single letter codes. More...

virtual void	residue_action (PackerTask &, Size resid) const
	Modify the packer task with the command that was read in. More...

Public Member Functions inherited from core::pack::task::ResfileCommand
virtual	~ResfileCommand ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Static Public Member Functions
static std::string	name ()

Private Attributes
utility::vector1< bool >	keep_canonical_aas_

std::list< chemical::AA >	na_allowed_

Detailed Description

PIKAA allows residues specifed in a following string and packing.

Member Function Documentation

virtual ResfileCommandOP core::pack::task::PIKAA::clone ( ) const

inlinevirtual

Implements core::pack::task::ResfileCommand.

void core::pack::task::PIKAA::initialize_from_tokens	(	utility::vector1< std::string > const &	tokens,
		Size &	which_token,
		Size	resid
	)

virtual

PIKAA allows residues specifed in a following string and packing the string should be formatted ALLCAPS with no spaces between residues using the standard single letter codes.

Implements core::pack::task::ResfileCommand.

References core::chemical::aa_from_oneletter_code(), chemical, core::pack::task::get_token(), core::chemical::na_ade, core::chemical::na_cyt, core::chemical::na_gua, core::chemical::na_thy, core::chemical::num_canonical_aas, core::chemical::oneletter_code_specifies_aa(), core::pack::task::onError(), and core::pack::task::TR.