core::pose::rna::RNA_SuiteName Class Reference

#include <RNA_SuiteName.hh>

Public Member Functions
	RNA_SuiteName ()
	~RNA_SuiteName ()
RNA_SuiteInfo	name2suite (std::string const name) const
RNA_SuiteAssignment	assign (utility::vector1< Real > const &torsions_in) const
RNA_SuiteAssignment	assign (Pose const &pose, Size const res) const

Public Attributes
Real const	epsilonmin
Real const	epsilonmax
Real const	delta3min
Real const	delta3max
Real const	delta2min
Real const	delta2max
Real const	gammapmin
Real const	gammapmax
Real const	gammatmin
Real const	gammatmax
Real const	gammammin
Real const	gammammax
Real const	alphamin
Real const	alphamax
Real const	betamin
Real const	betamax
Real const	zetamin
Real const	zetamax
Real const	delta_cutoff
Real const	gamma_cutoff1
Real const	gamma_cutoff2

Private Member Functions
	RNA_SuiteName (const RNA_SuiteName &)
void	operator= (const RNA_SuiteName &)
void	init ()
Real	distance_4d (utility::vector1< Real > const &torsion1, utility::vector1< Real > const &torsion2, utility::vector1< Size > const &half_width) const
Real	distance_7d (utility::vector1< Real > const &torsion1, utility::vector1< Real > const &torsion2, utility::vector1< Size > const &half_width) const
bool	is_in_between (utility::vector1< Real > const &target, utility::vector1< Real > const &dominant, utility::vector1< Real > const &satellite) const

Private Attributes
RNA_SuiteAssignment const	suite_undefined
Real const	dist_pow
utility::vector1< RNA_SuiteInfo >	all_suites
utility::vector1< Size >	regular_half_width
utility::vector1< std::string >	dominant_suites
utility::vector1< std::string >	satellite_suites
utility::vector1 < utility::vector1< Size > >	half_width_sat
utility::vector1 < utility::vector1< Size > >	half_width_dom

Constructor & Destructor Documentation

core::pose::rna::RNA_SuiteName::RNA_SuiteName

(

)

References init().

core::pose::rna::RNA_SuiteName::~RNA_SuiteName

(

)

core::pose::rna::RNA_SuiteName::RNA_SuiteName ( const RNA_SuiteName &  )

private

Member Function Documentation

RNA_SuiteAssignment core::pose::rna::RNA_SuiteName::assign

(

utility::vector1< Real > const &

torsions_in

)

const

References all_suites, alphamax, alphamin, betamax, betamin, delta2max, delta2min, delta3max, delta3min, delta_cutoff, distance_4d(), distance_7d(), dominant_suites, epsilonmax, epsilonmin, gamma_cutoff1, gamma_cutoff2, gammammax, gammammin, gammapmax, gammapmin, gammatmax, gammatmin, half_width_dom, half_width_sat, utility::vector1< T, class >::has_value(), utility::vector1< T, class >::index(), is_in_between(), numeric::constants::r::pi, regular_half_width, satellite_suites, torsion(), zetamax, and zetamin.

Referenced by assign(), and core::scoring::rna::RNA_JR_SuiteEnergy::residue_pair_energy().

RNA_SuiteAssignment core::pose::rna::RNA_SuiteName::assign	(	Pose const &	pose,
		Size const	res
	)		const

References core::chemical::rna::ALPHA, assign(), core::chemical::rna::BETA, core::chemical::rna::DELTA, core::chemical::rna::EPSILON, core::chemical::rna::GAMMA, core::pose::rna::is_rna_chainbreak(), core::conformation::Residue::mainchain_torsion(), numeric::principal_angle_degrees(), core::pose::Pose::residue(), suite_undefined, and core::chemical::rna::ZETA.

Real core::pose::rna::RNA_SuiteName::distance_4d ( utility::vector1< Real > const &  torsion1, utility::vector1< Real > const &  torsion2, utility::vector1< Size > const &  half_width  ) const

private

References dist_pow, and sum().

Referenced by assign().

Real core::pose::rna::RNA_SuiteName::distance_7d ( utility::vector1< Real > const &  torsion1, utility::vector1< Real > const &  torsion2, utility::vector1< Size > const &  half_width  ) const

private

References dist_pow, and sum().

Referenced by assign().

void core::pose::rna::RNA_SuiteName::init ( void  )

private

References all_suites, dominant_suites, half_width_dom, half_width_sat, utility::tools::make_vector1(), make_vector1(), regular_half_width, and satellite_suites.

Referenced by RNA_SuiteName().

bool core::pose::rna::RNA_SuiteName::is_in_between ( utility::vector1< Real > const &  target, utility::vector1< Real > const &  dominant, utility::vector1< Real > const &  satellite  ) const

private

Referenced by assign().

RNA_SuiteInfo core::pose::rna::RNA_SuiteName::name2suite

(

std::string const

name

)

const

References all_suites, and utility_exit_with_message.

void core::pose::rna::RNA_SuiteName::operator= ( const RNA_SuiteName &  )

private

Member Data Documentation

utility::vector1<RNA_SuiteInfo> core::pose::rna::RNA_SuiteName::all_suites

private

Referenced by assign(), init(), and name2suite().

Real const core::pose::rna::RNA_SuiteName::alphamax

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::alphamin

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::betamax

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::betamin

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::delta2max

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::delta2min

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::delta3max

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::delta3min

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::delta_cutoff

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::dist_pow

private

Referenced by distance_4d(), and distance_7d().

utility::vector1<std::string> core::pose::rna::RNA_SuiteName::dominant_suites

private

Referenced by assign(), and init().

Real const core::pose::rna::RNA_SuiteName::epsilonmax

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::epsilonmin

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gamma_cutoff1

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gamma_cutoff2

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gammammax

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gammammin

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gammapmax

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gammapmin

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gammatmax

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::gammatmin

Referenced by assign().

utility::vector1< utility::vector1<Size> > core::pose::rna::RNA_SuiteName::half_width_dom

private

Referenced by assign(), and init().

utility::vector1< utility::vector1<Size> > core::pose::rna::RNA_SuiteName::half_width_sat

private

Referenced by assign(), and init().

utility::vector1<Size> core::pose::rna::RNA_SuiteName::regular_half_width

private

Referenced by assign(), and init().

utility::vector1<std::string> core::pose::rna::RNA_SuiteName::satellite_suites

private

Referenced by assign(), and init().

RNA_SuiteAssignment const core::pose::rna::RNA_SuiteName::suite_undefined

private

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::zetamax

Referenced by assign().

Real const core::pose::rna::RNA_SuiteName::zetamin

Referenced by assign().

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The documentation for this class was generated from the following files:

• src/core/pose/rna/RNA_SuiteName.hh
• src/core/pose/rna/RNA_SuiteName.cc