| add_dna_base_distance_constraints(pose::Pose &pose, constraints::ConstraintSet &cst_set) const | core::scoring::dna::DNATorsionPotential | private |
| add_DNA_torsion_constraint(pose::Pose &pose, Size const i, constraints::ConstraintSet &cst_set, Size const dna_torsion_number, utility::vector1< func::AmberPeriodicFuncOP > const &gaussian_parameter_set) const | core::scoring::dna::DNATorsionPotential | private |
| add_dna_torsion_tethers(pose::Pose &pose, constraints::ConstraintSet &cst_set) const | core::scoring::dna::DNATorsionPotential | private |
| add_sugar_ring_closure_constraints(conformation::Residue const &rsd, constraints::ConstraintSet &cst_set) const | core::scoring::dna::DNATorsionPotential | |
| add_sugar_ring_closure_constraints(pose::Pose &pose, constraints::ConstraintSet &cst_set) const | core::scoring::dna::DNATorsionPotential | private |
| alpha_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| alpha_components() | core::scoring::dna::DNATorsionPotential | inline |
| alpha_components_ | core::scoring::dna::DNATorsionPotential | private |
| beta_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| beta_components() | core::scoring::dna::DNATorsionPotential | inline |
| beta_components_ | core::scoring::dna::DNATorsionPotential | private |
| c2prime_c3prime_bond_length_ | core::scoring::dna::DNATorsionPotential | private |
| c2prime_c3prime_dist_harm_func_ | core::scoring::dna::DNATorsionPotential | private |
| c2prime_c3prime_sd_ | core::scoring::dna::DNATorsionPotential | private |
| c3prime_c2prime_c1prime_angle_harm_func_ | core::scoring::dna::DNATorsionPotential | private |
| c3prime_c2prime_c1prime_bond_angle_ | core::scoring::dna::DNATorsionPotential | private |
| c4prime_c3prime_c2prime_angle_harm_func_ | core::scoring::dna::DNATorsionPotential | private |
| c4prime_c3prime_c2prime_bond_angle_ | core::scoring::dna::DNATorsionPotential | private |
| delta_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| delta_components() | core::scoring::dna::DNATorsionPotential | inline |
| delta_components_ | core::scoring::dna::DNATorsionPotential | private |
| delta_cutoff() const | core::scoring::dna::DNATorsionPotential | inline |
| DELTA_CUTOFF_ | core::scoring::dna::DNATorsionPotential | private |
| DNATorsionPotential() | core::scoring::dna::DNATorsionPotential | |
| epsilon_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| epsilon_components() | core::scoring::dna::DNATorsionPotential | inline |
| epsilon_components_ | core::scoring::dna::DNATorsionPotential | private |
| gamma_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| gamma_components() | core::scoring::dna::DNATorsionPotential | inline |
| gamma_components_ | core::scoring::dna::DNATorsionPotential | private |
| get_atom_ids_by_torsion(Size const dna_torsion_number, pose::Pose &pose, Size const resid, id::AtomID &id1, id::AtomID &id2, id::AtomID &id3, id::AtomID &id4) const | core::scoring::dna::DNATorsionPotential | private |
| init_dna_torsion_parameters() | core::scoring::dna::DNATorsionPotential | private |
| nu0_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| nu0_components() | core::scoring::dna::DNATorsionPotential | inline |
| nu0_components_ | core::scoring::dna::DNATorsionPotential | private |
| nu1_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| nu1_components() | core::scoring::dna::DNATorsionPotential | inline |
| nu1_components_ | core::scoring::dna::DNATorsionPotential | private |
| nu2_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| nu2_components() | core::scoring::dna::DNATorsionPotential | inline |
| nu2_components_ | core::scoring::dna::DNATorsionPotential | private |
| nu3_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| nu3_components() | core::scoring::dna::DNATorsionPotential | inline |
| nu3_components_ | core::scoring::dna::DNATorsionPotential | private |
| nu4_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| nu4_components() | core::scoring::dna::DNATorsionPotential | inline |
| nu4_components_ | core::scoring::dna::DNATorsionPotential | private |
| o3prime_c3prime_c2prime_angle_harm_func_ | core::scoring::dna::DNATorsionPotential | private |
| o3prime_c3prime_c2prime_bond_angle_ | core::scoring::dna::DNATorsionPotential | private |
| scale_dna_torsion_sd_ | core::scoring::dna::DNATorsionPotential | private |
| scale_dna_torsion_tether_ | core::scoring::dna::DNATorsionPotential | private |
| setup_constraints(pose::Pose &pose, constraints::ConstraintSetOP &dna_torsion_constraints, constraints::ConstraintSetOP &dna_sugar_close_constraints, constraints::ConstraintSetOP &dna_base_distance_constraints) const | core::scoring::dna::DNATorsionPotential | |
| zeta_atom_names_ | core::scoring::dna::DNATorsionPotential | private |
| zeta_components() | core::scoring::dna::DNATorsionPotential | inline |
| zeta_components_ | core::scoring::dna::DNATorsionPotential | private |
| ~DNATorsionPotential() | core::scoring::dna::DNATorsionPotential | inline |
1.8.7