core::pose::copydofs::CopyDofs Class Reference

#include <CopyDofs.hh>

Public Member Functions
	CopyDofs (pose::MiniPose const &template_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map, std::map< id::AtomID, Size > const &atom_id_domain_map)
	CopyDofs (pose::MiniPose const &template_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map)
	~CopyDofs ()
void	apply (pose::Pose &pose)
void	figure_out_dofs (pose::Pose &pose)
CopyDofsInfo	copy_dofs_info () const

Private Member Functions
void	figure_out_atom_id_domain_map (pose::Pose &pose)
bool	get_scratch_atom_id (id::AtomID &other_scratch_atom_id, std::map< core::id::AtomID, core::id::AtomID > const &atom_id_map, core::kinematics::tree::AtomCOP other_atom)
bool	check_domain_map (std::map< id::AtomID, Size > const &atom_id_domain_map, id::AtomID const &atom_id1, id::AtomID const &atom_id2)
bool	check_domain_map (std::map< id::AtomID, Size > const &atom_id_domain_map, utility::vector1< id::AtomID > const &atom_ids1, utility::vector1< id::AtomID > const &atom_ids2)

Private Attributes
pose::MiniPose const &	scratch_pose_
std::map< id::AtomID, id::AtomID > const &	atom_id_map_
std::map< id::AtomID, Size >	atom_id_domain_map_
bool const	atom_id_domain_map_inputted_
CopyDofsInfo	copy_dofs_info_

Constructor & Destructor Documentation

core::pose::copydofs::CopyDofs::CopyDofs	(	pose::MiniPose const &	template_pose,
		std::map< id::AtomID, id::AtomID > const &	atom_id_map,
		std::map< id::AtomID, Size > const &	atom_id_domain_map
	)

core::pose::copydofs::CopyDofs::CopyDofs	(	pose::MiniPose const &	template_pose,
		std::map< id::AtomID, id::AtomID > const &	atom_id_map
	)

core::pose::copydofs::CopyDofs::~CopyDofs

(

)

Member Function Documentation

void core::pose::copydofs::CopyDofs::apply

(

pose::Pose &

pose

)

References core::pose::copydofs::apply_dofs(), copy_dofs_info_, figure_out_atom_id_domain_map(), and figure_out_dofs().

Referenced by core::pose::copydofs::copy_dofs().

bool core::pose::copydofs::CopyDofs::check_domain_map ( std::map< id::AtomID, Size > const &  atom_id_domain_map, id::AtomID const &  atom_id1, id::AtomID const &  atom_id2  )

private

Referenced by check_domain_map(), and figure_out_dofs().

bool core::pose::copydofs::CopyDofs::check_domain_map ( std::map< id::AtomID, Size > const &  atom_id_domain_map, utility::vector1< id::AtomID > const &  atom_ids1, utility::vector1< id::AtomID > const &  atom_ids2  )

private

References check_domain_map().

CopyDofsInfo core::pose::copydofs::CopyDofs::copy_dofs_info ( ) const

inline

References copy_dofs_info_.

void core::pose::copydofs::CopyDofs::figure_out_atom_id_domain_map ( pose::Pose &  pose )

private

References atom_id_domain_map_, atom_id_domain_map_inputted_, and core::pose::copydofs::blank_atom_id_domain_map().

Referenced by apply().

void core::pose::copydofs::CopyDofs::figure_out_dofs

(

pose::Pose &

pose

)

References angle_radians(), core::kinematics::AtomTree::atom_dont_do_update(), atom_id_domain_map_, atom_id_map_, core::conformation::Residue::atom_name(), core::pose::Pose::atom_tree(), core::id::AtomID::atomno(), check_domain_map(), copy_dofs_info_, core::id::D, dihedral_radians(), core::pose::Pose::dof(), get_scratch_atom_id(), core::pose::Pose::jump(), length, core::conformation::Residue::name(), core::conformation::Residue::name1(), core::chemical::PHI, numeric::constants::d::pi, core::pose::Pose::residue(), core::id::AtomID::rsd(), scratch_pose_, core::pose::Pose::set_jump(), core::chemical::THETA, verbose, core::pose::MiniPose::xyz(), and core::pose::Pose::xyz().

Referenced by apply().

bool core::pose::copydofs::CopyDofs::get_scratch_atom_id ( id::AtomID &  other_scratch_atom_id, std::map< core::id::AtomID, core::id::AtomID > const &  atom_id_map, core::kinematics::tree::AtomCOP  other_atom  )

private

Referenced by figure_out_dofs().

Member Data Documentation

std::map< id::AtomID, Size > core::pose::copydofs::CopyDofs::atom_id_domain_map_

private

Referenced by figure_out_atom_id_domain_map(), and figure_out_dofs().

bool const core::pose::copydofs::CopyDofs::atom_id_domain_map_inputted_

private

Referenced by figure_out_atom_id_domain_map().

std::map< id::AtomID , id::AtomID > const& core::pose::copydofs::CopyDofs::atom_id_map_

private

Referenced by figure_out_dofs().

CopyDofsInfo core::pose::copydofs::CopyDofs::copy_dofs_info_

private

Referenced by apply(), copy_dofs_info(), and figure_out_dofs().

pose::MiniPose const& core::pose::copydofs::CopyDofs::scratch_pose_

private

Referenced by figure_out_dofs().

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The documentation for this class was generated from the following files:

• src/core/pose/copydofs/CopyDofs.hh
• src/core/pose/copydofs/CopyDofs.cc