core::scoring::membrane Namespace Reference

Classes
class	FaMPEnvEnergy
	Fullatom Membrane Environment Energy. More...
class	FaMPEnvEnergyCreator
	Creator Class for Membrane CBeta Energy Method. More...
class	FaMPEnvSmoothEnergy
	Fullatom Membrane Solvation Energy - Statistically Derived, and smoothed derivatives. More...
class	FaMPEnvSmoothEnergyCreator
	Membrane Termini Penalty Creator Class. More...
class	FaMPSolvEnergy
	Energy Method: Membrane Fullaotm Solvation Energy (LK) More...
class	FaMPSolvEnergyCreator
	Creator Class for Membrane CBeta Energy Method. More...
class	MembraneData
	Mmebrane Data Class. More...
class	MPCbetaEnergy
	Membrane Environemnt CBeta Energy Term. More...
class	MPCbetaEnergyCreator
	Creator Class for Membrane CBeta Energy Method. More...
class	MPEnvEnergy
	Mmebrane Environemnt Energy Term. More...
class	MPEnvEnergyCreator
	Creator Class for Membrane CBeta Energy Method. More...
class	MPLipoEnergy
	Membrane Lipophilicity term. More...
class	MPLipoEnergyCreator
	Creator Class for MPLipoEnergy. More...
class	MPNonHelixPenalty
	Class Membrane Non Helix Penalty. More...
class	MPNonHelixPenaltyCreator
	Membrane Non Hleix in mmebrane Penalty Creator Class. More...
class	MPPairEnergy
	Membrane Environemtn Residue Pair Energy Term. More...
class	MPPairEnergyCreator
	Creator Class for Membrane Residue Pair Energy Method. More...
class	MPTerminiPenalty
	Class Membrane Termini Penalty. More...
class	MPTerminiPenaltyCreator
	Membrane Termini Penalty Creator Class. More...
class	MPTMProjPenalty
	Class Membrane TM proj Penalty. More...
class	MPTMProjPenaltyCreator
	Membrane TM Proj Penalty Creator Class. More...

Typedefs
typedef utility::pointer::owning_ptr < FaMPEnvEnergy >	FaMPEnvEnergyOP
typedef utility::pointer::owning_ptr < FaMPEnvEnergy const >	FaMPEnvEnergyCOP
typedef utility::pointer::owning_ptr < FaMPEnvSmoothEnergy >	FaMPEnvSmoothEnergyOP
typedef utility::pointer::owning_ptr < FaMPEnvSmoothEnergy const >	FaMPEnvSmoothEnergyCOP
typedef utility::pointer::owning_ptr < FaMPSolvEnergy >	FaMPSolvEnergyOP
typedef utility::pointer::owning_ptr < FaMPSolvEnergy const >	FaMPSolvEnergyCOP
typedef utility::pointer::owning_ptr < MembraneData >	MembraneDataOP
typedef utility::pointer::owning_ptr < MembraneData const >	MembraneDataCOP
typedef utility::pointer::owning_ptr < MPCbetaEnergy >	MPCbetaEnergyOP
typedef utility::pointer::owning_ptr < MPCbetaEnergy const >	MPCbetaEnergyCOP
typedef utility::pointer::owning_ptr < MPEnvEnergy >	MPEnvEnergyOP
typedef utility::pointer::owning_ptr < MPEnvEnergy const >	MPEnvEnergyCOP
typedef utility::pointer::owning_ptr < MPLipoEnergy >	MPLipoEnergyOP
typedef utility::pointer::owning_ptr < MPLipoEnergy const >	MPLipoEnergyCOP
typedef utility::pointer::owning_ptr < MPNonHelixPenalty >	MPNonHelixPenaltyOP
typedef utility::pointer::owning_ptr < MPNonHelixPenalty const >	MPNonHelixPenaltyCOP
typedef utility::pointer::owning_ptr < MPPairEnergy >	MPPairEnergyOP
typedef utility::pointer::owning_ptr < MPPairEnergy const >	MPPairEnergyCOP
typedef utility::pointer::owning_ptr < MPTerminiPenalty >	MPTerminiPenaltyOP
typedef utility::pointer::owning_ptr < MPTerminiPenalty const >	MPTerminiPenaltyCOP
typedef utility::pointer::owning_ptr < MPTMProjPenalty >	MPTMProjPenaltyOP
typedef utility::pointer::owning_ptr < MPTMProjPenalty const >	MPTMProjPenaltyCOP

Functions
Real	sqr (Real x)

Variables
Distance const	start_sig = 9.8
Distance const	end_sig = 10.2
DistanceSquared const	start_sig2 = start_sig*start_sig
DistanceSquared const	end_sig2 = end_sig*end_sig

Typedef Documentation

typedef utility::pointer::owning_ptr< FaMPEnvEnergy const > core::scoring::membrane::FaMPEnvEnergyCOP

typedef utility::pointer::owning_ptr< FaMPEnvEnergy > core::scoring::membrane::FaMPEnvEnergyOP

typedef utility::pointer::owning_ptr< FaMPEnvSmoothEnergy const > core::scoring::membrane::FaMPEnvSmoothEnergyCOP

typedef utility::pointer::owning_ptr< FaMPEnvSmoothEnergy > core::scoring::membrane::FaMPEnvSmoothEnergyOP

typedef utility::pointer::owning_ptr< FaMPSolvEnergy const > core::scoring::membrane::FaMPSolvEnergyCOP

typedef utility::pointer::owning_ptr< FaMPSolvEnergy > core::scoring::membrane::FaMPSolvEnergyOP

typedef utility::pointer::owning_ptr< MembraneData const > core::scoring::membrane::MembraneDataCOP

typedef utility::pointer::owning_ptr< MembraneData > core::scoring::membrane::MembraneDataOP

typedef utility::pointer::owning_ptr< MPCbetaEnergy const > core::scoring::membrane::MPCbetaEnergyCOP

typedef utility::pointer::owning_ptr< MPCbetaEnergy > core::scoring::membrane::MPCbetaEnergyOP

typedef utility::pointer::owning_ptr< MPEnvEnergy const > core::scoring::membrane::MPEnvEnergyCOP

typedef utility::pointer::owning_ptr< MPEnvEnergy > core::scoring::membrane::MPEnvEnergyOP

typedef utility::pointer::owning_ptr< MPLipoEnergy const > core::scoring::membrane::MPLipoEnergyCOP

typedef utility::pointer::owning_ptr< MPLipoEnergy > core::scoring::membrane::MPLipoEnergyOP

typedef utility::pointer::owning_ptr< MPNonHelixPenalty const > core::scoring::membrane::MPNonHelixPenaltyCOP

typedef utility::pointer::owning_ptr< MPNonHelixPenalty > core::scoring::membrane::MPNonHelixPenaltyOP

typedef utility::pointer::owning_ptr< MPPairEnergy const > core::scoring::membrane::MPPairEnergyCOP

typedef utility::pointer::owning_ptr< MPPairEnergy > core::scoring::membrane::MPPairEnergyOP

typedef utility::pointer::owning_ptr< MPTerminiPenalty const > core::scoring::membrane::MPTerminiPenaltyCOP

typedef utility::pointer::owning_ptr< MPTerminiPenalty > core::scoring::membrane::MPTerminiPenaltyOP

typedef utility::pointer::owning_ptr< MPTMProjPenalty const > core::scoring::membrane::MPTMProjPenaltyCOP

typedef utility::pointer::owning_ptr< MPTMProjPenalty > core::scoring::membrane::MPTMProjPenaltyOP

Function Documentation

Real core::scoring::membrane::sqr ( Real  x )

inline

Referenced by core::scoring::membrane::FaMPEnvSmoothEnergy::sigmoidish_neighbor().

Variable Documentation

Distance const core::scoring::membrane::end_sig = 10.2

Referenced by core::scoring::membrane::FaMPEnvSmoothEnergy::increment_f1_f2_for_atom_pair(), and core::scoring::membrane::FaMPEnvSmoothEnergy::sigmoidish_neighbor().

DistanceSquared const core::scoring::membrane::end_sig2 = end_sig*end_sig

Referenced by core::scoring::membrane::FaMPEnvSmoothEnergy::increment_f1_f2_for_atom_pair(), and core::scoring::membrane::FaMPEnvSmoothEnergy::sigmoidish_neighbor().

Distance const core::scoring::membrane::start_sig = 9.8

Referenced by core::scoring::membrane::FaMPEnvSmoothEnergy::increment_f1_f2_for_atom_pair(), and core::scoring::membrane::FaMPEnvSmoothEnergy::sigmoidish_neighbor().

DistanceSquared const core::scoring::membrane::start_sig2 = start_sig*start_sig

Referenced by core::scoring::membrane::FaMPEnvSmoothEnergy::increment_f1_f2_for_atom_pair(), and core::scoring::membrane::FaMPEnvSmoothEnergy::sigmoidish_neighbor().