core::import_pose::pose_stream Namespace Reference

Classes
class	ExtendedPoseInputStream
class	LazySilentFilePoseInputStream
class	MetaPoseInputStream
class	PDBPoseInputStream
class	PoseInputStream
class	PoseOutputStream
class	SilentFilePoseInputStream

Typedefs
typedef std::string	string
typedef utility::file::FileName	FileName
typedef utility::pointer::owning_ptr < LazySilentFilePoseInputStream >	LazySilentFilePoseInputStreamOP
typedef utility::pointer::owning_ptr < PDBPoseInputStream >	PDBPoseInputStreamOP
typedef utility::pointer::owning_ptr < PoseInputStream >	PoseInputStreamOP
typedef utility::pointer::owning_ptr < SilentFilePoseInputStream >	SilentFilePoseInputStreamOP

Functions
utility::vector1 < utility::file::FileName >	filenames_from_list_file (utility::vector1< utility::file::FileName > const &list_fns)
MetaPoseInputStream	streams_from_cmd_line (bool const do_renumber_decoys)
	Get all input streams based on command-line input. More...
MetaPoseInputStream	streams_from_cmd_line ()
	Get all input streams based on command-line input, sorting silent file decoys in alphabetical order of tags. More...

Variables
static basic::Tracer	tr ("core.io.pose_stream")
static basic::Tracer	tr ("core.io.pose_stream")

Typedef Documentation

typedef utility::file::FileName core::import_pose::pose_stream::FileName

typedef utility::pointer::owning_ptr< LazySilentFilePoseInputStream > core::import_pose::pose_stream::LazySilentFilePoseInputStreamOP

typedef utility::pointer::owning_ptr< PDBPoseInputStream > core::import_pose::pose_stream::PDBPoseInputStreamOP

typedef utility::pointer::owning_ptr< PoseInputStream > core::import_pose::pose_stream::PoseInputStreamOP

typedef utility::pointer::owning_ptr< SilentFilePoseInputStream > core::import_pose::pose_stream::SilentFilePoseInputStreamOP

typedef std::string core::import_pose::pose_stream::string

Function Documentation

utility::vector1< utility::file::FileName > core::import_pose::pose_stream::filenames_from_list_file

(

utility::vector1< utility::file::FileName > const &

list_fns

)

References filename(), getline(), and utility_exit_with_message.

Referenced by streams_from_cmd_line().

MetaPoseInputStream core::import_pose::pose_stream::streams_from_cmd_line

(

bool const

do_renumber_decoys

)

Get all input streams based on command-line input.

If do_renumber_decoys is true, silent file decoys are sorted in alphabetical order of tags.

If renumber_decoys is true, silent file decoys are sorted in alphabetical order of tags.

References core::sequence::end, in::file::extended_pose, in::file::fasta, filenames_from_list_file(), in::file::l, in::file::lazy_silent, option, core::sequence::read_fasta_file(), in::file::s, sequence, in::file::silent, in::file::silent_energy_cut, in::file::silent_list, in::file::silent_renumber, in::file::tags, and user.

Referenced by streams_from_cmd_line().

MetaPoseInputStream core::import_pose::pose_stream::streams_from_cmd_line

(

)

Get all input streams based on command-line input, sorting silent file decoys in alphabetical order of tags.

References streams_from_cmd_line().

Variable Documentation

basic::Tracer core::import_pose::pose_stream::tr("core.io.pose_stream")

static

basic::Tracer core::import_pose::pose_stream::tr("core.io.pose_stream")

static

Referenced by core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose(), core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose(), core::import_pose::pose_stream::SilentFilePoseInputStream::read_all_files_(), and core::import_pose::pose_stream::SilentFilePoseInputStream::set_silent_file_data().