Rosetta Core  2014.35
Classes | Typedefs | Functions | Variables
core::import_pose::pose_stream Namespace Reference

Classes

class  ExtendedPoseInputStream
 
class  LazySilentFilePoseInputStream
 
class  MetaPoseInputStream
 
class  PDBPoseInputStream
 
class  PoseInputStream
 
class  PoseOutputStream
 
class  SilentFilePoseInputStream
 

Typedefs

typedef std::string string
 
typedef utility::file::FileName FileName
 
typedef
utility::pointer::owning_ptr
< LazySilentFilePoseInputStream
LazySilentFilePoseInputStreamOP
 
typedef
utility::pointer::owning_ptr
< PDBPoseInputStream
PDBPoseInputStreamOP
 
typedef
utility::pointer::owning_ptr
< PoseInputStream
PoseInputStreamOP
 
typedef
utility::pointer::owning_ptr
< SilentFilePoseInputStream
SilentFilePoseInputStreamOP
 

Functions

utility::vector1
< utility::file::FileName
filenames_from_list_file (utility::vector1< utility::file::FileName > const &list_fns)
 
MetaPoseInputStream streams_from_cmd_line (bool const do_renumber_decoys)
 Get all input streams based on command-line input. More...
 
MetaPoseInputStream streams_from_cmd_line ()
 Get all input streams based on command-line input, sorting silent file decoys in alphabetical order of tags. More...
 

Variables

static basic::Tracer tr ("core.io.pose_stream")
 
static basic::Tracer tr ("core.io.pose_stream")
 

Typedef Documentation

Function Documentation

utility::vector1< utility::file::FileName > core::import_pose::pose_stream::filenames_from_list_file ( utility::vector1< utility::file::FileName > const &  list_fns)
MetaPoseInputStream core::import_pose::pose_stream::streams_from_cmd_line ( bool const  do_renumber_decoys)

Get all input streams based on command-line input.

If do_renumber_decoys is true, silent file decoys are sorted in alphabetical order of tags.

If renumber_decoys is true, silent file decoys are sorted in alphabetical order of tags.

References core::sequence::end, in::file::extended_pose, in::file::fasta, filenames_from_list_file(), in::file::l, in::file::lazy_silent, option, core::sequence::read_fasta_file(), in::file::s, sequence, in::file::silent, in::file::silent_energy_cut, in::file::silent_list, in::file::silent_renumber, in::file::tags, and user.

Referenced by streams_from_cmd_line().

MetaPoseInputStream core::import_pose::pose_stream::streams_from_cmd_line ( )

Get all input streams based on command-line input, sorting silent file decoys in alphabetical order of tags.

References streams_from_cmd_line().

Variable Documentation

basic::Tracer core::import_pose::pose_stream::tr("core.io.pose_stream")
static
basic::Tracer core::import_pose::pose_stream::tr("core.io.pose_stream")
static