core::scoring::rna::data Namespace Reference

Classes
class	RNA_ChemicalMappingEnergy
class	RNA_ChemicalMappingEnergyCreator
class	RNA_DataBackboneEnergy
class	RNA_DataBackboneEnergyCreator
class	RNA_DataInfo
	Keep track of RNA chemical mapping data inside the pose. More...
class	RNA_Datum
class	RNA_DMS_LowResolutionPotential
class	RNA_DMS_Potential
class	RNA_Reactivity

Typedefs
typedef numeric::xyzVector < core::Real >	Vector
typedef utility::pointer::owning_ptr < RNA_DataInfo >	RNA_DataInfoOP
typedef utility::pointer::access_ptr < RNA_DataInfo >	RNA_DataInfoAP
typedef utility::pointer::owning_ptr < RNA_Reactivity >	RNA_ReactivityOP
typedef utility::pointer::access_ptr < RNA_Reactivity >	RNA_ReactivityAP
typedef utility::vector1 < RNA_Datum >	RNA_Data
typedef utility::vector1 < RNA_Reactivity >	RNA_Reactivities
typedef utility::pointer::owning_ptr < RNA_DMS_LowResolutionPotential >	RNA_DMS_LowResolutionPotentialOP
typedef utility::pointer::owning_ptr < RNA_DMS_LowResolutionPotential const >	RNA_DMS_LowResolutionPotentialCOP
typedef utility::pointer::owning_ptr < RNA_DMS_Potential >	RNA_DMS_PotentialOP
typedef utility::pointer::owning_ptr < RNA_DMS_Potential const >	RNA_DMS_PotentialCOP

Enumerations
enum	RNA_ReactivityType {   NO_REACTIVITY, DMS, CMCT, SHAPE_1M7,   HRF }

Functions
core::Size	lookup_idx (Real const value, utility::vector1< Real > &values)
Size	get_bool_idx (bool const value, utility::vector1< bool > const &values)
Size	get_idx (Real const value, utility::vector1< Real > const &values)

Typedef Documentation

typedef utility::vector1< RNA_Datum > core::scoring::rna::data::RNA_Data

typedef utility::pointer::access_ptr< RNA_DataInfo > core::scoring::rna::data::RNA_DataInfoAP

typedef utility::pointer::owning_ptr< RNA_DataInfo > core::scoring::rna::data::RNA_DataInfoOP

typedef utility::pointer::owning_ptr< RNA_DMS_LowResolutionPotential const > core::scoring::rna::data::RNA_DMS_LowResolutionPotentialCOP

typedef utility::pointer::owning_ptr< RNA_DMS_LowResolutionPotential > core::scoring::rna::data::RNA_DMS_LowResolutionPotentialOP

typedef utility::pointer::owning_ptr< RNA_DMS_Potential const > core::scoring::rna::data::RNA_DMS_PotentialCOP

typedef utility::pointer::owning_ptr< RNA_DMS_Potential > core::scoring::rna::data::RNA_DMS_PotentialOP

typedef utility::vector1< RNA_Reactivity > core::scoring::rna::data::RNA_Reactivities

typedef utility::pointer::access_ptr< RNA_Reactivity > core::scoring::rna::data::RNA_ReactivityAP

typedef utility::pointer::owning_ptr< RNA_Reactivity > core::scoring::rna::data::RNA_ReactivityOP

typedef numeric::xyzVector< core::Real > core::scoring::rna::data::Vector

Enumeration Type Documentation

enum core::scoring::rna::data::RNA_ReactivityType

Enumerator
NO_REACTIVITY
DMS
CMCT
SHAPE_1M7
HRF

Function Documentation

core::Size core::scoring::rna::data::get_bool_idx	(	bool const	value,
		utility::vector1< bool > const &	values
	)

Referenced by core::scoring::rna::data::RNA_DMS_LowResolutionPotential::evaluate(), core::scoring::rna::data::RNA_DMS_Potential::evaluate(), and core::scoring::rna::data::RNA_DMS_Potential::get_logL_values().

core::Size core::scoring::rna::data::get_idx	(	Real const	value,
		utility::vector1< Real > const &	values
	)

Referenced by core::scoring::rna::data::RNA_DMS_LowResolutionPotential::evaluate(), core::scoring::rna::data::RNA_DMS_Potential::evaluate(), and core::scoring::rna::data::RNA_DMS_Potential::get_logL_values().

core::Size core::scoring::rna::data::lookup_idx	(	Real const	value,
		utility::vector1< Real > &	values
	)

References utility::vector1< T, class >::has_value(), utility::vector1< T, class >::index(), and runtime_assert.

Referenced by core::scoring::rna::data::RNA_DMS_LowResolutionPotential::read_DMS_low_resolution_stats_file(), and core::scoring::rna::data::RNA_DMS_Potential::read_DMS_stats_file().