Rosetta Core  2014.35
core::io::rna::RDAT Member List

This is the complete list of members for core::io::rna::RDAT, including all inherited members.

annotations() const core::io::rna::RDATinline
annotations_core::io::rna::RDATprivate
check_annotation(Annotation const &annotation) const core::io::rna::RDATprivate
check_annotations(utility::vector1< Annotation > const &annotations) const core::io::rna::RDATprivate
check_rdat() const core::io::rna::RDAT
check_sequence_seqpos(std::string const &sequence_seqpos) const core::io::rna::RDATprivate
comments() const core::io::rna::RDATinline
comments_core::io::rna::RDATprivate
data_annotations() const core::io::rna::RDATinline
data_annotations_core::io::rna::RDATprivate
fill_data_annotations_if_empty()core::io::rna::RDATprivate
fill_data_from_features(utility::vector1< char > const &seqchars, utility::vector1< core::Size > const &resnums, utility::vector1< std::string > const &feature_names, utility::vector1< utility::vector1< core::Real > > const &all_feature_vals)core::io::rna::RDAT
fill_header_information(pose::Pose &pose)core::io::rna::RDAT
fill_if_empty(std::string &data_string, utility::vector1< std::string > &data_strings, std::string const tag) const core::io::rna::RDATprivate
fill_seqpos(std::string const &seqpos_info, std::string &sequence_seqpos)core::io::rna::RDATprivate
fill_sequences_and_structures()core::io::rna::RDATprivate
fill_sequences_if_empty()core::io::rna::RDATprivate
fill_structures_if_empty()core::io::rna::RDATprivate
get_annotation(std::string const tag) const core::io::rna::RDATprivate
name() const core::io::rna::RDATinline
name_core::io::rna::RDATprivate
offset() const core::io::rna::RDATinline
offset_core::io::rna::RDATprivate
output_data(utility::io::ozstream &out) const core::io::rna::RDAT
output_rdat_header(utility::io::ozstream &out) const core::io::rna::RDATprivate
output_rdat_to_file(std::string const filename) const core::io::rna::RDAT
RDAT()core::io::rna::RDAT
RDAT(std::string const filename)core::io::rna::RDAT
RDAT(std::string const name, std::string const sequence, core::Size const offset, utility::vector1< Size > const &seqpos, std::string const structure, utility::vector1< Annotation > const &annotations, utility::vector1< utility::vector1< Annotation > > const &data_annotations, utility::vector1< utility::vector1< core::Real > > const &reactivity, utility::vector1< utility::vector1< core::Real > > const &reactivity_error, utility::vector1< std::string > const &comments)core::io::rna::RDAT
reactivity() const core::io::rna::RDATinline
reactivity_core::io::rna::RDATprivate
reactivity_error() const core::io::rna::RDATinline
reactivity_error_core::io::rna::RDATprivate
read_rdat_file(std::string const filename)core::io::rna::RDAT
remove_tag(std::string &line, std::string const tag) const core::io::rna::RDATprivate
save_data(std::string const &line, utility::vector1< utility::vector1< Real > > &var) const core::io::rna::RDATprivate
save_data(std::string const &line, utility::vector1< Real > &var) const core::io::rna::RDATprivate
save_data_with_idx(utility::vector1< std::string > &var, Size const idx, std::string const &value) const core::io::rna::RDATprivate
save_data_with_idx(utility::vector1< utility::vector1< Annotation > > &var, Size const idx, Annotation &value) const core::io::rna::RDATprivate
seqpos() const core::io::rna::RDATinline
seqpos_core::io::rna::RDATprivate
sequence() const core::io::rna::RDATinline
sequence_core::io::rna::RDATprivate
sequences() const core::io::rna::RDATinline
sequences_core::io::rna::RDATprivate
set_annotations(utility::vector1< Annotation > const &setting)core::io::rna::RDATinline
set_comments(utility::vector1< std::string > const &setting)core::io::rna::RDATinline
set_data_annotations(utility::vector1< utility::vector1< Annotation > > const &setting)core::io::rna::RDATinline
set_name(std::string const &setting)core::io::rna::RDATinline
set_offset(int const &setting)core::io::rna::RDATinline
set_reactivity(utility::vector1< utility::vector1< core::Real > > const &setting)core::io::rna::RDATinline
set_reactivity_error(utility::vector1< utility::vector1< core::Real > > const &setting)core::io::rna::RDATinline
set_seqpos(utility::vector1< int > const &setting)core::io::rna::RDATinline
set_sequence(std::string const &setting)core::io::rna::RDATinline
set_sequences(utility::vector1< std::string > const &setting)core::io::rna::RDATinline
set_structure(std::string const &setting)core::io::rna::RDATinline
set_structures(utility::vector1< std::string > const &setting)core::io::rna::RDATinline
set_trace(utility::vector1< utility::vector1< core::Real > > const &setting)core::io::rna::RDATinline
set_version(std::string const &setting)core::io::rna::RDATinline
set_xsel(utility::vector1< core::Real > const &setting)core::io::rna::RDATinline
set_xsel_refine(utility::vector1< utility::vector1< core::Real > > const &setting)core::io::rna::RDATinline
str2cell(std::string const s) const core::io::rna::RDATprivate
structure() const core::io::rna::RDATinline
structure_core::io::rna::RDATprivate
structures() const core::io::rna::RDATinline
structures_core::io::rna::RDATprivate
trace() const core::io::rna::RDATinline
trace_core::io::rna::RDATprivate
version() const core::io::rna::RDATinline
version_core::io::rna::RDATprivate
xsel() const core::io::rna::RDATinline
xsel_core::io::rna::RDATprivate
xsel_refine() const core::io::rna::RDATinline
xsel_refine_core::io::rna::RDATprivate
~RDAT()core::io::rna::RDAT