Rosetta Core  2014.35
Namespaces
ExtendAlignerSW.cc File Reference

class definition for a class that aligns two Sequence objects using ScoringScheme and the Smith-Waterman alignment algorithm. More...

#include <core/types.hh>
#include <basic/Tracer.hh>
#include <core/sequence/SWAligner.hh>
#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/DP_Matrix.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <ObjexxFCL/format.hh>
#include <iostream>
#include <string>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::sequence
 

Detailed Description

class definition for a class that aligns two Sequence objects using ScoringScheme and the Smith-Waterman alignment algorithm.

Author
James Thompson