Rosetta Core  2014.35
core::scoring::etable::TableLookupEtableEnergy Member List

This is the complete list of members for core::scoring::etable::TableLookupEtableEnergy, including all inherited members.

__pad0__core::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
__pad1__core::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, AtomPairEnergy &ape) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
atomic_interaction_cutoff() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
atomic_interaction_cutoff() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
atomic_interaction_cutoff() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
BaseEtableEnergy(methods::EnergyMethodCreatorOP creator, Etable const &etable_in, methods::EnergyMethodOptions const &options)core::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
BaseEtableEnergy(BaseEtableEnergy< TableLookupEtableEnergy > const &)core::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
BaseEtableEnergy(Etable const &etable_in, methods::EnergyMethodOptions const &options, ScoreType st_atr, ScoreType st_rep, ScoreType st_sol)core::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
BaseEtableEnergy(Etable const &etable_in, methods::EnergyMethodOptions const &options, ScoreType st_atr, ScoreType st_rep, ScoreType st_sol)core::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
bump_energy_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
bump_energy_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
bump_energy_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
bump_energy_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
bump_energy_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
bump_energy_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
clone() const core::scoring::etable::TableLookupEtableEnergyvirtual
ContextIndependentTwoBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::ContextIndependentTwoBodyEnergy
create_rotamer_trie(conformation::RotamerSetBase const &rotset, pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie(conformation::Residue const &residue, pose::Pose const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie(conformation::RotamerSetBase const &rotset, pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie(conformation::RotamerSetBase const &rotset, pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie_1(conformation::RotamerSetBase const &rotset, Size connection_type) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie_1(conformation::RotamerSetBase const &rotset, Size connection_type) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie_1(conformation::RotamerSetBase const &rotset, Size connection_type) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie_2(conformation::RotamerSetBase const &rotset) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie_2(conformation::RotamerSetBase const &rotset) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
create_rotamer_trie_2(conformation::RotamerSetBase const &rotset) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
defines_high_order_terms(pose::Pose const &) const core::scoring::methods::EnergyMethodvirtual
defines_intrares_dof_derivatives(pose::Pose const &p) const core::scoring::methods::TwoBodyEnergyvirtual
defines_intrares_energy(EnergyMap const &) const core::scoring::etable::TableLookupEtableEnergyvirtual
defines_intrares_energy_for_residue(conformation::Residue const &res) const core::scoring::methods::TwoBodyEnergyvirtual
defines_score_for_residue_pair(conformation::Residue const &res1, conformation::Residue const &res2, bool res_moving_wrt_eachother) const core::scoring::methods::TwoBodyEnergyvirtual
derived_prepare_for_residue_pair(Size const, Size const, pose::Pose const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
derived_prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
derived_prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
determine_crossover_behavior(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
determine_crossover_behavior(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
determine_crossover_behavior(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
divides_backbone_and_sidechain_energetics() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlinevirtual
divides_backbone_and_sidechain_energetics() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlinevirtual
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
EnergyMethod(EnergyMethod const &src)core::scoring::methods::EnergyMethod
etable() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &sfxn, EnergyMap const &weights, Vector &F1, Vector &F2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &sfxn, EnergyMap const &weights, Vector &F1, Vector &F2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &sfxn, EnergyMap const &weights, Vector &F1, Vector &F2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
core::scoring::methods::ContextIndependentTwoBodyEnergy::eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const core::scoring::methods::EnergyMethodvirtual
eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
eval_intrares_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const core::scoring::etable::TableLookupEtableEnergyvirtual
eval_intrares_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
eval_intraresidue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const core::scoring::methods::TwoBodyEnergyvirtual
eval_residue_pair_derivatives(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &, ResSingleMinimizationData const &, ResPairMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &r1_at_derivs, utility::vector1< DerivVectorPair > &r2_at_derivs) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
evaluate_rotamer_background_energy_maps(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< EnergyMap > &emaps) const core::scoring::methods::ShortRangeTwoBodyEnergyvirtual
evaluate_rotamer_intrares_energies(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< core::PackerEnergy > &energies) const core::scoring::methods::TwoBodyEnergyvirtual
evaluate_rotamer_intrares_energy_maps(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< EnergyMap > &emaps) const core::scoring::methods::TwoBodyEnergyvirtual
evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
Evaluator typedefcore::scoring::etable::TableLookupEtableEnergy
fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethodvirtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
get_count_pair_function(Size res1, Size res2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_count_pair_function(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_count_pair_function(Size res1, Size res2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_count_pair_function(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_count_pair_function(Size res1, Size res2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_count_pair_function(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_count_pair_function_trie(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
get_count_pair_function_trie(conformation::Residue const &res1, conformation::Residue const &res2, trie::RotamerTrieBaseCOP trie1, trie::RotamerTrieBaseCOP trie2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
get_count_pair_function_trie(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
get_count_pair_function_trie(conformation::Residue const &res1, conformation::Residue const &res2, trie::RotamerTrieBaseCOP trie1, trie::RotamerTrieBaseCOP trie2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
get_count_pair_function_trie(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
get_count_pair_function_trie(conformation::Residue const &res1, conformation::Residue const &res2, trie::RotamerTrieBaseCOP trie1, trie::RotamerTrieBaseCOP trie2, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
get_intrares_countpair(conformation::Residue const &res, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_intrares_countpair(conformation::Residue const &res, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
get_intrares_countpair(conformation::Residue const &res, pose::Pose const &pose, ScoreFunction const &sfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >
heavyatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2, DistanceSquared &d2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
heavyatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2, DistanceSquared &d2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
heavyatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
heavyatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
hydrogen_interaction_cutoff2() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
hydrogen_interaction_cutoff2() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
hydrogen_interaction_cutoff2() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
hydrogenatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
hydrogenatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
hydrogenatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
hydrogenatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
indicate_required_context_graphs(utility::vector1< bool > &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
indicate_required_context_graphs(utility::vector1< bool > &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
indicate_required_context_graphs(utility::vector1< bool > &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
interpolate_bins(conformation::Atom const &atom1, conformation::Atom const &atom2, Real &d2, int &disbin, Real &frac) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
interpolate_bins(conformation::Atom const &atom1, conformation::Atom const &atom2, Real &d2, int &disbin, Real &frac) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
interpolate_bins(conformation::Atom const &atom1, conformation::Atom const &atom2, Real &d2, int &disbin, Real &frac) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
interres_evaluator() const core::scoring::etable::TableLookupEtableEnergyinline
interres_evaluator()core::scoring::etable::TableLookupEtableEnergyinline
interres_evaluator_core::scoring::etable::TableLookupEtableEnergyprivate
intrares_evaluator() const core::scoring::etable::TableLookupEtableEnergyinline
intrares_evaluator()core::scoring::etable::TableLookupEtableEnergyinline
intrares_evaluator_core::scoring::etable::TableLookupEtableEnergyprivate
memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
memb_atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
memb_atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
memb_eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
memb_eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
memb_eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
memb_eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
method_type() const core::scoring::methods::ContextIndependentTwoBodyEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
pair_energy_H_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
pair_energy_H_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inlineprotected
parent typedefcore::scoring::etable::TableLookupEtableEnergy
prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
rep_scoretype() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
rep_scoretype() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
rep_scoretype() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
requires_a_setup_for_derivatives_for_residue_pair_opportunity(pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
requires_a_setup_for_scoring_for_residue_opportunity(pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
requires_a_setup_for_scoring_for_residue_pair_opportunity(pose::Pose const &pose) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
residue_pair_energy_ext(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResPairMinimizationData const &min_data, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
score_types() const core::scoring::methods::EnergyMethodinline
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
set_scoretypes(ScoreType atr_type, ScoreType rep_type, ScoreType sol_type) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
set_scoretypes(ScoreType atr_type, ScoreType rep_type, ScoreType sol_type) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >protected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &, ResSingleMinimizationData &min_data) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_derivatives_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &, ResPairMinimizationData &data_cache) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_minimizing(pose::Pose &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &min_map) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_minimizing(pose::Pose &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &min_map) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_minimizing(pose::Pose &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &min_map) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData &min_data) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_minimizing_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData const &res1_data_cache, ResSingleMinimizationData const &res2_data_cache, ResPairMinimizationData &min_data) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_scoring_(pose::Pose const &pose, scoring::ScoreFunction const &) const core::scoring::etable::TableLookupEtableEnergy
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &, ResSingleMinimizationData &min_data) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
setup_for_scoring_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &, ResPairMinimizationData &data_cache) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
ShortRangeTwoBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::ShortRangeTwoBodyEnergy
sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
sum_energies(Real atr, Real rep, Real solv, Real bb) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
sum_energies(Real atr, Real rep, Real solv, Real bb) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >inline
TableLookupEtableEnergy(Etable const &etable_in, methods::EnergyMethodOptions const &options)core::scoring::etable::TableLookupEtableEnergy
TableLookupEtableEnergy(TableLookupEtableEnergy const &)core::scoring::etable::TableLookupEtableEnergy
TwoBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::TwoBodyEnergy
update_residue_for_packing(pose::Pose &pose, Size resid) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
update_residue_for_packing(pose::Pose &pose, Size resid) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
update_residue_for_packing(pose::Pose &pose, Size resid) constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
use_extended_intrares_energy_interface() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
use_extended_residue_pair_energy_interface() constcore::scoring::etable::BaseEtableEnergy< TableLookupEtableEnergy >virtual
version() const core::scoring::etable::TableLookupEtableEnergyprivatevirtual
~ContextIndependentTwoBodyEnergy()core::scoring::methods::ContextIndependentTwoBodyEnergyvirtual
~EnergyMethod()core::scoring::methods::EnergyMethodvirtual
~ShortRangeTwoBodyEnergy()core::scoring::methods::ShortRangeTwoBodyEnergyvirtual
~TwoBodyEnergy()core::scoring::methods::TwoBodyEnergyvirtual