Rosetta Core  2014.35
Namespaces | Functions | Variables
pack_missing_sidechains.cc File Reference

function to fix missing sidechains in input PDBs (especially those surface lysines that get sidechain-backbone clashes!) More...

#include <core/pack/pack_missing_sidechains.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ResidueType.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/Tracer.hh>
#include <core/id/AtomID_Map.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::pack
 

Functions

void core::pack::pack_missing_sidechains (pose::Pose &pose, id::AtomID_Mask const &missing)
 This function runs rotamer trials on residues missing sidechain density (as described by the AtomID_Mask) More...
 
bool core::pack::figure_out_repackable_residues (core::pose::Pose &pose, core::id::AtomID_Mask const &to_repack, utility::vector1_bool &repackable)
 return vector of bools with true for each residue that has >=1 atom in to_repack that is not VIRTUAL, ORBS or LPbb More...
 

Variables

static basic::Tracer TR ("core.pack.pack_missing_sidechains")
 

Detailed Description

function to fix missing sidechains in input PDBs (especially those surface lysines that get sidechain-backbone clashes!)

Author
Steven Lewis smlew.nosp@m.i@gm.nosp@m.ail.c.nosp@m.om

Variable Documentation

basic::Tracer TR("core.pack.pack_missing_sidechains")
static