core::coarse::TranslatorSet Class Reference

#include <TranslatorSet.hh>

Public Types
typedef std::string	ResName
typedef std::map< ResName, TranslatorCOP >	TranslatorMap
typedef TranslatorMap::iterator	iterator
typedef TranslatorMap::const_iterator	const_iterator
typedef pack::dunbrack::RotamerLibrary	RotamerLibrary
typedef utility::pointer::access_ptr < chemical::ResidueTypeSet >	ResidueTypeSetAP

Public Member Functions
	TranslatorSet (const RuleSet &rules, chemical::ResidueTypeSetCAP residue_set, ResidueTypeSetAP coarse_set)
void	pretty_print (std::ostream &os) const
	prints Translator mappings More...
void	coarsify (pose::Pose &pose_out, pose::Pose const &pose_in) const
	generate new coarseified pose from coordinates in pose_in More...
conformation::ResidueOP	coarsify (const conformation::Residue &fine_rsd) const
	generate new coarsified residue from coordinates in fine_rsd More...
bool	has (ResName name) const
TranslatorCOP const &	default_for_aa (chemical::AA aa) const

Protected Member Functions
iterator	begin ()
const_iterator	begin () const
iterator	end ()
const_iterator	end () const

Private Attributes
TranslatorMap	coarse_maps_
const chemical::ResidueTypeSetCAP	residue_set_
const chemical::ResidueTypeSetCAP	coarse_residue_set_

Member Typedef Documentation

typedef TranslatorMap::const_iterator core::coarse::TranslatorSet::const_iterator

typedef TranslatorMap::iterator core::coarse::TranslatorSet::iterator

typedef utility::pointer::access_ptr< chemical::ResidueTypeSet > core::coarse::TranslatorSet::ResidueTypeSetAP

typedef std::string core::coarse::TranslatorSet::ResName

typedef pack::dunbrack::RotamerLibrary core::coarse::TranslatorSet::RotamerLibrary

typedef std::map<ResName,TranslatorCOP> core::coarse::TranslatorSet::TranslatorMap

Constructor & Destructor Documentation

core::coarse::TranslatorSet::TranslatorSet	(	const RuleSet &	rules,
		chemical::ResidueTypeSetCAP	residue_set,
		ResidueTypeSetAP	coarse_set
	)

References core::chemical::ResidueType::aa(), coarse_maps_, coarse_residue_set_, cout, core::chemical::ResidueType::name(), core::chemical::ResidueType::name3(), residue_set_, core::coarse::TR, and Warning().

Member Function Documentation

iterator core::coarse::TranslatorSet::begin ( )

inlineprotected

References coarse_maps_.

Referenced by pretty_print().

const_iterator core::coarse::TranslatorSet::begin ( ) const

inlineprotected

References coarse_maps_.

void core::coarse::TranslatorSet::coarsify	(	pose::Pose &	pose_out,
		pose::Pose const &	pose_in
	)		const

generate new coarseified pose from coordinates in pose_in

References core::pose::Pose::append_residue_by_bond(), core::pose::Pose::clear(), core::pose::Pose::fold_tree(), core::pose::Pose::residue(), and core::pose::Pose::total_residue().

conformation::ResidueOP core::coarse::TranslatorSet::coarsify

(

const conformation::Residue &

fine_rsd

)

const

generate new coarsified residue from coordinates in fine_rsd

References coarse_maps_, has(), and core::conformation::Residue::name().

TranslatorCOP const & core::coarse::TranslatorSet::default_for_aa

(

chemical::AA

aa

)

const

References coarse_maps_, residue_set_, and Warning().

iterator core::coarse::TranslatorSet::end ( )

inlineprotected

References coarse_maps_.

Referenced by pretty_print().

const_iterator core::coarse::TranslatorSet::end ( ) const

inlineprotected

References coarse_maps_.

bool core::coarse::TranslatorSet::has

(

TranslatorSet::ResName

name

)

const

References coarse_maps_.

Referenced by coarsify().

void core::coarse::TranslatorSet::pretty_print

(

std::ostream &

os

)

const

prints Translator mappings

References begin(), and end().

Member Data Documentation

TranslatorMap core::coarse::TranslatorSet::coarse_maps_

mutableprivate

Referenced by begin(), coarsify(), default_for_aa(), end(), has(), and TranslatorSet().

const chemical::ResidueTypeSetCAP core::coarse::TranslatorSet::coarse_residue_set_

private

Referenced by TranslatorSet().

const chemical::ResidueTypeSetCAP core::coarse::TranslatorSet::residue_set_

private

Referenced by default_for_aa(), and TranslatorSet().

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The documentation for this class was generated from the following files:

• src/core/coarse/TranslatorSet.hh
• src/core/coarse/TranslatorSet.cc