core::scoring::SS_Killhairpins_Info Class Reference

#include <SS_Killhairpins_Info.hh>

Public Member Functions
	SS_Killhairpins_Info ()
	SS_Killhairpins_Info (SS_Killhairpins_Info const &src)
basic::datacache::CacheableDataOP	clone () const
Hairpins const &	hairpins () const
Hairpins &	hairpins ()
bool	check_hairpin (core::Size const &strand1_res, core::Size const &strand2_res)
void	setup_from_psipred (utility::io::izstream &input_file)
void	setup_from_kill_hairpins_file (utility::io::izstream &input_file)
void	setup_killhairpins ()
bool	kill_parallel () const
bool	kill_antiparallel () const
Public Member Functions inherited from basic::datacache::CacheableData
virtual	~CacheableData ()

Private Attributes
bool	kill_parallel_
bool	kill_antiparallel_
Hairpins	hairpins_

Constructor & Destructor Documentation

core::scoring::SS_Killhairpins_Info::SS_Killhairpins_Info

(

)

Referenced by clone().

core::scoring::SS_Killhairpins_Info::SS_Killhairpins_Info

(

SS_Killhairpins_Info const &

src

)

Member Function Documentation

bool core::scoring::SS_Killhairpins_Info::check_hairpin	(	core::Size const &	strand1_res,
		core::Size const &	strand2_res
	)

References hairpins_, and core::scoring::Hairpins::list().

basic::datacache::CacheableDataOP core::scoring::SS_Killhairpins_Info::clone ( ) const

inlinevirtual

Implements basic::datacache::CacheableData.

References SS_Killhairpins_Info().

Hairpins const& core::scoring::SS_Killhairpins_Info::hairpins ( ) const

inline

References hairpins_.

Hairpins& core::scoring::SS_Killhairpins_Info::hairpins ( )

inline

References hairpins_.

bool core::scoring::SS_Killhairpins_Info::kill_antiparallel ( ) const

inline

References kill_antiparallel_.

bool core::scoring::SS_Killhairpins_Info::kill_parallel ( ) const

inline

References kill_parallel_.

void core::scoring::SS_Killhairpins_Info::setup_from_kill_hairpins_file

(

utility::io::izstream &

input_file

)

References core::scoring::Hairpins::append_hairpin(), utility::io::izstream::eof(), getline(), hairpins_, runtime_assert, core::scoring::trKillHairpinsIO, and numeric::random::uniform().

Referenced by setup_killhairpins().

void core::scoring::SS_Killhairpins_Info::setup_from_psipred

(

utility::io::izstream &

input_file

)

References core::scoring::Hairpins::append_hairpin(), utility::io::izstream::eof(), getline(), hairpins_, basic::options::OptionKeys::abinitio::kill_hairpins_frequency, kill_parallel_, basic::options::option, runtime_assert, ss, core::scoring::trKillHairpinsIO, numeric::random::uniform(), and utility_exit_with_message.

Referenced by setup_killhairpins().

void core::scoring::SS_Killhairpins_Info::setup_killhairpins

(

)

References core::scoring::Hairpins::clear(), getline(), hairpins_, kill_antiparallel_, basic::options::OptionKeys::abinitio::kill_hairpins, kill_parallel_, basic::options::option, setup_from_kill_hairpins_file(), setup_from_psipred(), utility::split(), user, and utility_exit_with_message.

Member Data Documentation

Hairpins core::scoring::SS_Killhairpins_Info::hairpins_

private

Referenced by check_hairpin(), hairpins(), setup_from_kill_hairpins_file(), setup_from_psipred(), and setup_killhairpins().

bool core::scoring::SS_Killhairpins_Info::kill_antiparallel_

private

Referenced by kill_antiparallel(), and setup_killhairpins().

bool core::scoring::SS_Killhairpins_Info::kill_parallel_

private

Referenced by kill_parallel(), setup_from_psipred(), and setup_killhairpins().

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The documentation for this class was generated from the following files:

• src/core/scoring/SS_Killhairpins_Info.hh
• src/core/scoring/SS_Killhairpins_Info.cc