core::scoring::ResidueNblistData Class Reference

#include <ResidueNeighborList.hh>

Public Types
typedef basic::datacache::CacheableData	parent
typedef basic::datacache::CacheableDataOP	CacheableDataOP
typedef basic::datacache::CacheableDataCOP	CacheableDataCOP
typedef etable::count_pair::CountPairFunctionCOP	CountPairFunctionCOP

Public Member Functions
	ResidueNblistData ()
virtual	~ResidueNblistData ()
CacheableDataOP	clone () const
void	initialize (conformation::Residue const &res, CountPairFunctionCOP cpfxn, Real heavy_heavy_dist_cutoff=0.0, Real heavy_hydrogen_dist_cutoff=0.0, Real hydrogen_hydrogen_dist_cutoff=0.0)
	Initialize the residue-nblist; if there are no intra-residue interactions, then provide a null-pointing count-pair function. More...
utility::vector1< SmallAtNb > const &	atom_neighbors () const
Public Member Functions inherited from basic::datacache::CacheableData
virtual	~CacheableData ()

Private Attributes
utility::vector1< SmallAtNb >	atom_neighbors_

Member Typedef Documentation

typedef basic::datacache::CacheableDataCOP core::scoring::ResidueNblistData::CacheableDataCOP

typedef basic::datacache::CacheableDataOP core::scoring::ResidueNblistData::CacheableDataOP

typedef etable::count_pair::CountPairFunctionCOP core::scoring::ResidueNblistData::CountPairFunctionCOP

typedef basic::datacache::CacheableData core::scoring::ResidueNblistData::parent

Constructor & Destructor Documentation

core::scoring::ResidueNblistData::ResidueNblistData

(

)

Referenced by clone().

core::scoring::ResidueNblistData::~ResidueNblistData ( )

virtual

Member Function Documentation

utility::vector1< SmallAtNb > const& core::scoring::ResidueNblistData::atom_neighbors ( ) const

inline

References atom_neighbors_.

ResiduePairNeighborList::CacheableDataOP core::scoring::ResidueNblistData::clone ( ) const

virtual

Implements basic::datacache::CacheableData.

References ResidueNblistData().

void core::scoring::ResidueNblistData::initialize	(	conformation::Residue const &	res,
		CountPairFunctionCOP	cpfxn,
		Real	heavy_heavy_dist_cutoff = 0.0,
		Real	heavy_hydrogen_dist_cutoff = 0.0,
		Real	hydrogen_hydrogen_dist_cutoff = 0.0
	)

Initialize the residue-nblist; if there are no intra-residue interactions, then provide a null-pointing count-pair function.

References core::conformation::Residue::atom_is_hydrogen(), atom_neighbors_, numeric::xyzVector< class >::distance_squared(), core::conformation::Residue::natoms(), weight, and core::conformation::Residue::xyz().

Member Data Documentation

utility::vector1< SmallAtNb > core::scoring::ResidueNblistData::atom_neighbors_

private

Referenced by atom_neighbors(), and initialize().

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The documentation for this class was generated from the following files:

• src/core/scoring/ResidueNeighborList.hh
• src/core/scoring/ResidueNeighborList.cc