core::chemical::SetPolymerConnectAtom Class Reference

set an atom as polymer connection More...

#include <PatchOperation.hh>

Public Member Functions
	SetPolymerConnectAtom (std::string const &atom_name_in, std::string const &upper_lower_in)
	constructor the type of connection is "LOWER" or "UPPER" More...
bool	apply (ResidueType &rsd) const
	set an atom in ResidueType rsd as a polymer connection atom More...
Public Member Functions inherited from core::chemical::PatchOperation
virtual	~PatchOperation ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Attributes
std::string	atom_name_
int	upper_lower_

Detailed Description

set an atom as polymer connection

Constructor & Destructor Documentation

core::chemical::SetPolymerConnectAtom::SetPolymerConnectAtom	(	std::string const &	atom_name_in,
		std::string const &	upper_lower_in
	)

constructor the type of connection is "LOWER" or "UPPER"

References upper_lower_, and utility_exit_with_message.

Member Function Documentation

bool core::chemical::SetPolymerConnectAtom::apply ( ResidueType &  rsd ) const

virtual

set an atom in ResidueType rsd as a polymer connection atom

Implements core::chemical::PatchOperation.

References atom_name_, core::chemical::ResidueType::has(), core::chemical::ResidueType::name(), core::chemical::ResidueType::set_lower_connect_atom(), core::chemical::ResidueType::set_upper_connect_atom(), core::chemical::TR_PatchOperations, and upper_lower_.

Member Data Documentation

std::string core::chemical::SetPolymerConnectAtom::atom_name_

private

Referenced by apply().

int core::chemical::SetPolymerConnectAtom::upper_lower_

private

Referenced by apply(), and SetPolymerConnectAtom().

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The documentation for this class was generated from the following files:

• src/core/chemical/PatchOperation.hh
• src/core/chemical/PatchOperation.cc