util.cc File Reference

#include <core/pose/copydofs/util.hh>
#include <core/pose/copydofs/CopyDofs.hh>
#include <core/pose/MiniPose.hh>
#include <core/pose/Pose.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/chemical/ResidueType.hh>
#include <basic/Tracer.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::pose
	core::pose::copydofs

Functions
void	core::pose::copydofs::copy_dofs (pose::Pose &pose, MiniPose const &scratch_pose, core::pose::ResMap const &res_map)
	A very useful function that copies degrees of freedom from one pose to another. More...
void	core::pose::copydofs::copy_dofs_match_atom_names (pose::Pose &pose, Pose const &scratch_pose)
void	core::pose::copydofs::copy_dofs_match_atom_names (pose::Pose &pose, MiniPose const &chunk_pose, core::pose::ResMap const &res_map)
void	core::pose::copydofs::copy_dofs (pose::Pose &pose, Pose const &scratch_pose)
void	core::pose::copydofs::copy_dofs (pose::Pose &pose, Pose const &scratch_pose, core::pose::ResMap const &res_map)
void	core::pose::copydofs::copy_dofs_match_atom_names (pose::Pose &pose, Pose const &scratch_pose, core::pose::ResMap const &res_map, bool const backbone_only, bool const side_chain_only, bool const ignore_virtual)
void	core::pose::copydofs::copy_dofs (pose::Pose &pose, Pose const &scratch_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map)
void	core::pose::copydofs::copy_dofs (pose::Pose &pose, MiniPose const &scratch_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map)
void	core::pose::copydofs::copy_dofs (pose::Pose &pose, MiniPose const &scratch_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map, std::map< id::AtomID, Size > const &atom_id_domain_map)
void	core::pose::copydofs::setup_atom_id_map (std::map< core::id::AtomID, core::id::AtomID > &atom_id_map, ResMap const &res_map, core::pose::Pose const &pose)
void	core::pose::copydofs::setup_atom_id_map_match_atom_names (std::map< core::id::AtomID, core::id::AtomID > &atom_id_map, ResMap const &res_map, core::pose::Pose const &pose, core::pose::Pose const &reference_pose, bool const backbone_only, bool const side_chain_only, bool const ignore_virtual)
void	core::pose::copydofs::setup_atom_id_map_match_atom_names (std::map< core::id::AtomID, core::id::AtomID > &atom_id_map, ResMap const &res_map, core::pose::Pose const &pose, MiniPose const &chunk_pose)
void	core::pose::copydofs::apply_dofs (pose::Pose &pose, CopyDofsInfo const &copy_dofs_info, core::Real const dof_tolerance)
std::map< id::AtomID, Size >	core::pose::copydofs::blank_atom_id_domain_map (pose::Pose const &pose)

Variables
static basic::Tracer	TR ("core.pose.copydofs.util")

Detailed Description

Detailed:

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Variable Documentation

basic::Tracer TR("core.pose.copydofs.util")

static