core::pack::task::residue_selector::ChainSelector Class Reference

#include <ChainSelector.hh>

Public Member Functions
	ChainSelector ()
virtual	~ChainSelector ()
virtual void	apply (core::pose::Pose const &pose, ResidueSubset &subset) const
	Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue() More...
virtual void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
virtual std::string	get_name () const
utility::vector1< std::string > const &	chain_strings () const
void	set_chain_strings (utility::vector1< std::string > const &)
Public Member Functions inherited from core::pack::task::residue_selector::ResidueSelector
	ResidueSelector ()
virtual	~ResidueSelector ()

Static Public Member Functions
static std::string	class_name ()

Private Member Functions
void	select_chain_by_index (core::pose::Pose const &, ResidueSubset &, core::Size) const
void	select_chain_by_pdb_chain_char (core::pose::Pose const &, ResidueSubset &, char) const

Private Attributes
utility::vector1< std::string >	chain_strings_

Constructor & Destructor Documentation

core::pack::task::residue_selector::ChainSelector::ChainSelector

(

)

core::pack::task::residue_selector::ChainSelector::~ChainSelector ( )

virtual

Member Function Documentation

void core::pack::task::residue_selector::ChainSelector::apply ( core::pose::Pose const &  pose, ResidueSubset &  subset  ) const

virtual

Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue()

Implements core::pack::task::residue_selector::ResidueSelector.

References chain_strings_, select_chain_by_index(), select_chain_by_pdb_chain_char(), and core::pose::Pose::total_residue().

utility::vector1< std::string > const & core::pack::task::residue_selector::ChainSelector::chain_strings

(

)

const

References chain_strings_.

std::string core::pack::task::residue_selector::ChainSelector::class_name ( )

static

Referenced by get_name(), and core::pack::task::residue_selector::ChainSelectorCreator::keyname().

std::string core::pack::task::residue_selector::ChainSelector::get_name ( ) const

virtual

Implements core::pack::task::residue_selector::ResidueSelector.

References class_name().

Referenced by select_chain_by_pdb_chain_char().

void core::pack::task::residue_selector::ChainSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datamap  )

virtual

Chains are given either as single characters (matched against the chain in the input PDB) or as integers (matched against the pose-assigned index for the chain) in a comma-separated list.

Reimplemented from core::pack::task::residue_selector::ResidueSelector.

References chain_strings_, and utility::string_split().

void core::pack::task::residue_selector::ChainSelector::select_chain_by_index ( core::pose::Pose const &  pose, ResidueSubset &  subset, core::Size  chain_index  ) const

private

References core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), core::conformation::Conformation::num_chains(), and runtime_assert.

Referenced by apply().

void core::pack::task::residue_selector::ChainSelector::select_chain_by_pdb_chain_char ( core::pose::Pose const &  pose, ResidueSubset &  subset, char  ch  ) const

private

References get_name(), core::pose::Pose::pdb_info(), and core::pose::Pose::total_residue().

Referenced by apply().

void core::pack::task::residue_selector::ChainSelector::set_chain_strings

(

utility::vector1< std::string > const &

setting

)

References chain_strings_.

Member Data Documentation

utility::vector1< std::string > core::pack::task::residue_selector::ChainSelector::chain_strings_

private

Referenced by apply(), chain_strings(), parse_my_tag(), and set_chain_strings().

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The documentation for this class was generated from the following files:

• src/core/pack/task/residue_selector/ChainSelector.hh
• src/core/pack/task/residue_selector/ChainSelector.cc