core::pack::task::residue_selector::NumNeighborsSelector Class Reference

#include <NumNeighborsSelector.hh>

Public Member Functions
	NumNeighborsSelector ()
	NumNeighborsSelector (Size threshold, core::Real distance_cutoff)
virtual	~NumNeighborsSelector ()
virtual void	apply (core::pose::Pose const &pose, ResidueSubset &subset) const
	Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue() More...
virtual void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
	Initialize any data members of this instance from an input tag and a DataMap object. More...
virtual std::string	get_name () const
bool	count_water () const
Size	threshold () const
Real	distance_cutoff () const
void	count_water (bool setting)
void	threshold (Size setting)
void	distance_cutoff (Size setting)
Public Member Functions inherited from core::pack::task::residue_selector::ResidueSelector
	ResidueSelector ()
virtual	~ResidueSelector ()

Static Public Member Functions
static std::string	class_name ()

Private Attributes
bool	count_water_
Size	threshold_
Real	distance_cutoff_

Constructor & Destructor Documentation

core::pack::task::residue_selector::NumNeighborsSelector::NumNeighborsSelector

(

)

core::pack::task::residue_selector::NumNeighborsSelector::NumNeighborsSelector	(	Size	threshold,
		core::Real	distance_cutoff
	)

core::pack::task::residue_selector::NumNeighborsSelector::~NumNeighborsSelector ( )

virtual

Member Function Documentation

void core::pack::task::residue_selector::NumNeighborsSelector::apply ( core::pose::Pose const &  pose, ResidueSubset &  subset  ) const

virtual

Make modifications to the subset vector given an input pose. The input ResidueSubset should already be of size pose.total_residue()

Implements core::pack::task::residue_selector::ResidueSelector.

References core::conformation::Residue::aa(), core::chemical::aa_h2o, core::pose::Pose::conformation(), count_water_, distance_cutoff_, core::conformation::find_neighbors(), core::pose::Pose::residue(), core::conformation::residue_point_graph_from_conformation(), threshold_, and core::pose::Pose::total_residue().

std::string core::pack::task::residue_selector::NumNeighborsSelector::class_name ( )

static

Referenced by get_name(), and core::pack::task::residue_selector::NumNeighborsSelectorCreator::keyname().

bool core::pack::task::residue_selector::NumNeighborsSelector::count_water

(

)

const

References count_water_.

Referenced by parse_my_tag().

void core::pack::task::residue_selector::NumNeighborsSelector::count_water

(

bool

setting

)

References count_water_.

Real core::pack::task::residue_selector::NumNeighborsSelector::distance_cutoff

(

)

const

References distance_cutoff_.

void core::pack::task::residue_selector::NumNeighborsSelector::distance_cutoff

(

Size

setting

)

References distance_cutoff_.

std::string core::pack::task::residue_selector::NumNeighborsSelector::get_name ( ) const

virtual

Implements core::pack::task::residue_selector::ResidueSelector.

References class_name().

void core::pack::task::residue_selector::NumNeighborsSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

virtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::pack::task::residue_selector::ResidueSelector.

References count_water(), distance_cutoff_, and threshold().

Size core::pack::task::residue_selector::NumNeighborsSelector::threshold

(

)

const

References threshold_.

Referenced by parse_my_tag().

void core::pack::task::residue_selector::NumNeighborsSelector::threshold

(

Size

setting

)

References threshold_.

Member Data Documentation

bool core::pack::task::residue_selector::NumNeighborsSelector::count_water_

private

Referenced by apply(), and count_water().

Real core::pack::task::residue_selector::NumNeighborsSelector::distance_cutoff_

private

Referenced by apply(), distance_cutoff(), and parse_my_tag().

Size core::pack::task::residue_selector::NumNeighborsSelector::threshold_

private

Referenced by apply(), and threshold().

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The documentation for this class was generated from the following files:

• src/core/pack/task/residue_selector/NumNeighborsSelector.hh
• src/core/pack/task/residue_selector/NumNeighborsSelector.cc