Rosetta Core: core::conformation::ResidueFactory Class Reference

Rosetta Core 2014.35

a collection of functions making a single residue More...

#include <ResidueFactory.hh>

Static Public Member Functions
static ResidueOP	create_residue (chemical::ResidueType const &rsd_type)
	creates residue of desired type, coords are ideal values in some default spatial orientation More...

static ResidueOP	create_residue (chemical::ResidueType const &rsd_type, Residue const &current_rsd, Conformation const &conformation, bool preserve_c_beta=false)
	rotamer-style creation, uses backbone of existing residue (current_rsd) More...

Detailed Description

a collection of functions making a single residue

Member Function Documentation

ResidueOP core::conformation::ResidueFactory::create_residue ( chemical::ResidueType const & rsd_type )

static

creates residue of desired type, coords are ideal values in some default spatial orientation

Referenced by core::scoring::rna::data::RNA_DMS_Potential::add_probe_to_pose(), core::pose::add_variant_type_to_residue(), core::pose::addVirtualResAsRoot(), core::pack::rotamer_set::build_fixed_O_water_rotamers_independent(), core::pack::rotamer_set::build_lib_dna_rotamers(), core::pack::rotamer_set::build_moving_O_water_rotamers_dependent(), core::pack::rotamer_set::build_moving_O_water_rotamers_independent(), core::pack::rotamer_set::RotamerSet_::build_optimize_H_rotamers(), core::scoring::GenBornPotential::build_placeholders(), core::pack::rotamer_set::build_random_dna_rotamers(), core::pack::rotamer_set::build_rna_chi_rotamers(), core::pack::rotamer_set::RotamerSet_::build_rotamers_for_concrete(), core::conformation::change_cys_state(), core::pose::rna::correctly_position_cutpoint_phosphate_torsions(), core::pack::rotamer_set::create_oriented_water_rotamer(), core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T >::create_rotamers_from_chisets(), core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T >::create_rotamers_from_chisets(), core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary::fill_rotamer_vector(), core::conformation::form_disulfide(), core::conformation::idealize_position(), core::pack::dunbrack::SingleLigandRotamerLibrary::init_from_file(), core::conformation::insert_ideal_bonds_at_polymer_junction(), core::conformation::insert_ideal_mainchain_bonds(), core::conformation::is_ideal_position(), core::scoring::methods::IdealParametersDatabase::lookup_angle_legacy(), core::scoring::methods::IdealParametersDatabase::lookup_bondangle_buildideal(), core::scoring::methods::IdealParametersDatabase::lookup_bondlength_buildideal(), core::scoring::methods::IdealParametersDatabase::lookup_length_legacy(), core::scoring::methods::IdealParametersDatabase::lookup_torsion_legacy(), core::pose::make_pose_from_saccharide_sequence(), core::pose::make_pose_from_sequence(), core::fragment::make_pose_from_sequence_(), core::conformation::symmetry::SymmetricConformation::recalculate_transforms(), core::scoring::constraints::BackboneStubLinearConstraint::remapped_clone(), core::scoring::constraints::BackboneStubConstraint::remapped_clone(), core::pose::remove_variant_type_from_residue(), core::conformation::replace_conformation_residue_copying_existing_coordinates(), core::pose::replace_pose_residue_copying_existing_coordinates(), core::conformation::symmetry::setup_symmetric_conformation(), core::scoring::methods::setup_water_builders_for_residue_type(), and core::util::switch_to_residue_type_set().

ResidueOP core::conformation::ResidueFactory::create_residue	(	chemical::ResidueType const &	rsd_type,
		Residue const &	current_rsd,
		Conformation const &	conformation,
		bool	preserve_c_beta = `false`
	)

static

rotamer-style creation, uses backbone of existing residue (current_rsd)

The documentation for this class was generated from the following files:

src/core/conformation/ResidueFactory.hh
src/core/conformation/ResidueFactory.cc