Rosetta Core  2014.35
core::pack::interaction_graph::RotamerDots Member List

This is the complete list of members for core::pack::interaction_graph::RotamerDots, including all inherited members.

atom_counts_core::pack::interaction_graph::RotamerDotsprivate
atom_sasa_core::pack::interaction_graph::RotamerDotsmutableprivate
copy(RotamerDots const &rhs)core::pack::interaction_graph::RotamerDots
decrement_from_cached(RotamerDotsCache const &cached_dot_overlap)core::pack::interaction_graph::RotamerDots
dot_coord(Size index)core::pack::interaction_graph::RotamerDotsstatic
dot_coords_core::pack::interaction_graph::RotamerDotsprivatestatic
get_atom_atom_coverage(Vector const &at1_xyz, Real at1_base_radius, Vector const &at2_xyz, Real at2_base_radius, utility::vector1< ObjexxFCL::ubyte > &at1_sphere_covered, utility::vector1< ObjexxFCL::ubyte > &at2_sphere_covered, Real dist_sq) const core::pack::interaction_graph::RotamerDots
get_atom_coords_xyz(Size atom_index) const core::pack::interaction_graph::RotamerDots
get_atom_counts()core::pack::interaction_graph::RotamerDotsinline
get_atom_radius(Size atom_index) const core::pack::interaction_graph::RotamerDots
get_atom_sasa(Size atom_index) const core::pack::interaction_graph::RotamerDots
get_num_atoms() const core::pack::interaction_graph::RotamerDots
get_num_covered_total() const core::pack::interaction_graph::RotamerDots
get_num_uncovered(core::Size atom) const core::pack::interaction_graph::RotamerDots
get_overlap_cache(RotamerDots const &other, RotamerDotsCache &others_dots_covered_by_this, RotamerDotsCache &this_dots_covered_by_other, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache) const core::pack::interaction_graph::RotamerDotsprivate
get_radii() const core::pack::interaction_graph::RotamerDots
get_res_res_overlap(RotamerDots const &other_res, utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &res1_covered_by_res2, utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &res2_covered_by_res1, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache) const core::pack::interaction_graph::RotamerDots
get_sasa() const core::pack::interaction_graph::RotamerDots
increment_both(RotamerDots &other)core::pack::interaction_graph::RotamerDots
increment_both_and_cache(RotamerDots &other_rotamer, RotamerDotsCache &others_dots_covered_by_this, RotamerDotsCache &this_dots_covered_by_other, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache)core::pack::interaction_graph::RotamerDots
increment_from_cached(RotamerDotsCache const &cached_dot_overlap)core::pack::interaction_graph::RotamerDots
increment_self_overlap()core::pack::interaction_graph::RotamerDots
increment_this_and_cache(RotamerDots const &other, RotamerDotsCache &this_overlap_on_other, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache)core::pack::interaction_graph::RotamerDots
initialize_dot_coords(utility::vector1< core::Vector > &dot_coords)core::pack::interaction_graph::RotamerDotsprivatestatic
initialize_sasa_arrays()core::pack::interaction_graph::RotamerDotsprivatestatic
invert_to_boolmasks(utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &inv_dots) const core::pack::interaction_graph::RotamerDots
invert_to_boolmasks(utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &inv_dots, utility::vector1< Size > const &ats_to_update) const core::pack::interaction_graph::RotamerDots
lg_angles_core::pack::interaction_graph::RotamerDotsstatic
lg_masks_core::pack::interaction_graph::RotamerDotsstatic
max_atom_radius()core::pack::interaction_graph::RotamerDots
name3() const core::pack::interaction_graph::RotamerDots
num_atoms_core::pack::interaction_graph::RotamerDotsprivate
num_bytes_core::pack::interaction_graph::RotamerDotsstatic
operator!=(RotamerDots const &rhs)core::pack::interaction_graph::RotamerDots
operator=(RotamerDots const &rhs)core::pack::interaction_graph::RotamerDots
overlaps(RotamerDots const &other) const core::pack::interaction_graph::RotamerDots
polar_expansion_radius_core::pack::interaction_graph::RotamerDotsstatic
print(std::ostream &os) const core::pack::interaction_graph::RotamerDots
probe_radius_core::pack::interaction_graph::RotamerDotsstatic
radii_core::pack::interaction_graph::RotamerDotsprivate
radius_for_attype(Size const attype_index)core::pack::interaction_graph::RotamerDots
rotamer() const core::pack::interaction_graph::RotamerDots
rotamer_core::pack::interaction_graph::RotamerDotsprivate
RotamerDots()core::pack::interaction_graph::RotamerDots
RotamerDots(conformation::ResidueCOP rotamer, bool exclude_hydrogen_atoms=false, bool use_expanded_polar_atom_radii=false)core::pack::interaction_graph::RotamerDots
RotamerDots(RotamerDots const &rhs)core::pack::interaction_graph::RotamerDots
sasa_core::pack::interaction_graph::RotamerDotsmutableprivate
sasa_arrays_initialized_core::pack::interaction_graph::RotamerDotsprivatestatic
sasa_is_current_core::pack::interaction_graph::RotamerDotsmutableprivate
seqpos() const core::pack::interaction_graph::RotamerDots
state_unassigned() const core::pack::interaction_graph::RotamerDots
zero()core::pack::interaction_graph::RotamerDots
~RotamerDots()core::pack::interaction_graph::RotamerDotsvirtual