| atom_counts_ | core::pack::interaction_graph::RotamerDots | private |
| atom_sasa_ | core::pack::interaction_graph::RotamerDots | mutableprivate |
| copy(RotamerDots const &rhs) | core::pack::interaction_graph::RotamerDots | |
| decrement_from_cached(RotamerDotsCache const &cached_dot_overlap) | core::pack::interaction_graph::RotamerDots | |
| dot_coord(Size index) | core::pack::interaction_graph::RotamerDots | static |
| dot_coords_ | core::pack::interaction_graph::RotamerDots | privatestatic |
| get_atom_atom_coverage(Vector const &at1_xyz, Real at1_base_radius, Vector const &at2_xyz, Real at2_base_radius, utility::vector1< ObjexxFCL::ubyte > &at1_sphere_covered, utility::vector1< ObjexxFCL::ubyte > &at2_sphere_covered, Real dist_sq) const | core::pack::interaction_graph::RotamerDots | |
| get_atom_coords_xyz(Size atom_index) const | core::pack::interaction_graph::RotamerDots | |
| get_atom_counts() | core::pack::interaction_graph::RotamerDots | inline |
| get_atom_radius(Size atom_index) const | core::pack::interaction_graph::RotamerDots | |
| get_atom_sasa(Size atom_index) const | core::pack::interaction_graph::RotamerDots | |
| get_num_atoms() const | core::pack::interaction_graph::RotamerDots | |
| get_num_covered_total() const | core::pack::interaction_graph::RotamerDots | |
| get_num_uncovered(core::Size atom) const | core::pack::interaction_graph::RotamerDots | |
| get_overlap_cache(RotamerDots const &other, RotamerDotsCache &others_dots_covered_by_this, RotamerDotsCache &this_dots_covered_by_other, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache) const | core::pack::interaction_graph::RotamerDots | private |
| get_radii() const | core::pack::interaction_graph::RotamerDots | |
| get_res_res_overlap(RotamerDots const &other_res, utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &res1_covered_by_res2, utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &res2_covered_by_res1, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache) const | core::pack::interaction_graph::RotamerDots | |
| get_sasa() const | core::pack::interaction_graph::RotamerDots | |
| increment_both(RotamerDots &other) | core::pack::interaction_graph::RotamerDots | |
| increment_both_and_cache(RotamerDots &other_rotamer, RotamerDotsCache &others_dots_covered_by_this, RotamerDotsCache &this_dots_covered_by_other, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache) | core::pack::interaction_graph::RotamerDots | |
| increment_from_cached(RotamerDotsCache const &cached_dot_overlap) | core::pack::interaction_graph::RotamerDots | |
| increment_self_overlap() | core::pack::interaction_graph::RotamerDots | |
| increment_this_and_cache(RotamerDots const &other, RotamerDotsCache &this_overlap_on_other, utility::vector1< utility::vector1< bool > > &atom_atom_overlaps_cache) | core::pack::interaction_graph::RotamerDots | |
| initialize_dot_coords(utility::vector1< core::Vector > &dot_coords) | core::pack::interaction_graph::RotamerDots | privatestatic |
| initialize_sasa_arrays() | core::pack::interaction_graph::RotamerDots | privatestatic |
| invert_to_boolmasks(utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &inv_dots) const | core::pack::interaction_graph::RotamerDots | |
| invert_to_boolmasks(utility::vector1< utility::vector1< ObjexxFCL::ubyte > > &inv_dots, utility::vector1< Size > const &ats_to_update) const | core::pack::interaction_graph::RotamerDots | |
| lg_angles_ | core::pack::interaction_graph::RotamerDots | static |
| lg_masks_ | core::pack::interaction_graph::RotamerDots | static |
| max_atom_radius() | core::pack::interaction_graph::RotamerDots | |
| name3() const | core::pack::interaction_graph::RotamerDots | |
| num_atoms_ | core::pack::interaction_graph::RotamerDots | private |
| num_bytes_ | core::pack::interaction_graph::RotamerDots | static |
| operator!=(RotamerDots const &rhs) | core::pack::interaction_graph::RotamerDots | |
| operator=(RotamerDots const &rhs) | core::pack::interaction_graph::RotamerDots | |
| overlaps(RotamerDots const &other) const | core::pack::interaction_graph::RotamerDots | |
| polar_expansion_radius_ | core::pack::interaction_graph::RotamerDots | static |
| print(std::ostream &os) const | core::pack::interaction_graph::RotamerDots | |
| probe_radius_ | core::pack::interaction_graph::RotamerDots | static |
| radii_ | core::pack::interaction_graph::RotamerDots | private |
| radius_for_attype(Size const attype_index) | core::pack::interaction_graph::RotamerDots | |
| rotamer() const | core::pack::interaction_graph::RotamerDots | |
| rotamer_ | core::pack::interaction_graph::RotamerDots | private |
| RotamerDots() | core::pack::interaction_graph::RotamerDots | |
| RotamerDots(conformation::ResidueCOP rotamer, bool exclude_hydrogen_atoms=false, bool use_expanded_polar_atom_radii=false) | core::pack::interaction_graph::RotamerDots | |
| RotamerDots(RotamerDots const &rhs) | core::pack::interaction_graph::RotamerDots | |
| sasa_ | core::pack::interaction_graph::RotamerDots | mutableprivate |
| sasa_arrays_initialized_ | core::pack::interaction_graph::RotamerDots | privatestatic |
| sasa_is_current_ | core::pack::interaction_graph::RotamerDots | mutableprivate |
| seqpos() const | core::pack::interaction_graph::RotamerDots | |
| state_unassigned() const | core::pack::interaction_graph::RotamerDots | |
| zero() | core::pack::interaction_graph::RotamerDots | |
| ~RotamerDots() | core::pack::interaction_graph::RotamerDots | virtual |
1.8.7