Rosetta Core  2014.35
core::chemical::Atom Member List

This is the complete list of members for core::chemical::Atom, including all inherited members.

Atom()core::chemical::Atom
Atom(std::string const &name_in, std::string const mm_name, Size const mm_atom_type_index, ElementCOP element, Real const charge, Vector const ideal_xyz)core::chemical::Atom
Atom(Atom const &src)core::chemical::Atom
atom_type_index() const core::chemical::Atominline
atom_type_index(Size const &atom_type_index)core::chemical::Atominline
atom_type_index_core::chemical::Atomprivate
bonded_orbitals() const core::chemical::Atominline
bonded_orbitals()core::chemical::Atominline
bonded_orbitals_core::chemical::Atomprivate
charge() const core::chemical::Atominline
charge(Real const &charge)core::chemical::Atominline
charge_core::chemical::Atomprivate
element_core::chemical::Atomprivate
element_type() const core::chemical::Atominline
element_type(ElementCOP element)core::chemical::Atominline
formal_charge() const core::chemical::Atominline
formal_charge(int charge)core::chemical::Atominline
formal_charge_core::chemical::Atomprivate
gasteiger_atom_type() const core::chemical::Atom
gasteiger_atom_type(core::chemical::gasteiger::GasteigerAtomTypeDataCOP gasteiger_atom_type)core::chemical::Atom
gasteiger_atom_type_core::chemical::Atomprivate
has_orbitals() const core::chemical::Atominline
has_orbitals(bool orbitals)core::chemical::Atominline
has_orbitals_core::chemical::Atomprivate
heavyatom_has_polar_hydrogens() const core::chemical::Atominline
heavyatom_has_polar_hydrogens(bool heavyatom_has_polar_hydrogens)core::chemical::Atominline
heavyatom_has_polar_hydrogens_core::chemical::Atomprivate
ideal_xyz() const core::chemical::Atominline
ideal_xyz(Vector const &ideal_xyz)core::chemical::Atominline
ideal_xyz_core::chemical::Atomprivate
is_acceptor() const core::chemical::Atominline
is_acceptor(bool acceptor)core::chemical::Atominline
is_acceptor_core::chemical::Atomprivate
is_fake() const core::chemical::Atom
is_haro() const core::chemical::Atominline
is_haro(bool haro)core::chemical::Atominline
is_haro_core::chemical::Atomprivate
is_hydrogen() const core::chemical::Atominline
is_hydrogen(bool hydrogen)core::chemical::Atominline
is_hydrogen_core::chemical::Atomprivate
is_polar_hydrogen() const core::chemical::Atominline
is_polar_hydrogen(bool polar)core::chemical::Atominline
is_polar_hydrogen_core::chemical::Atomprivate
is_virtual() const core::chemical::Atominline
is_virtual(bool is_virtual)core::chemical::Atominline
is_virtual_core::chemical::Atomprivate
mm_atom_type_index() const core::chemical::Atominline
mm_atom_type_index(Size const &mm_atom_type_index)core::chemical::Atominline
mm_atom_type_index_core::chemical::Atomprivate
mm_name() const core::chemical::Atominline
mm_name(std::string const &name)core::chemical::Atominline
mm_name_core::chemical::Atomprivate
name() const core::chemical::Atominline
name(std::string const &name)core::chemical::Atominline
name_core::chemical::Atomprivate
operator=(Atom const &atom)core::chemical::Atom
operator==(Atom const &atom) const core::chemical::Atominline
show(std::ostream &out=std::cout) const core::chemical::Atom
~Atom()core::chemical::Atom