#include <RotamerTrieBase.hh>

Public Member Functions
virtual	~RotamerTrieBase ()

virtual void	print () const =0
	Useful Functions. More...

void	set_resid_2_connection_entry (Size resid, Size connid)

bool	connection_exists_to_residue (Size resid) const

Size	connection_id_for_residue (Size resid) const

Size	get_count_pair_data_for_residue (Size other_residue) const

virtual void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0
	Four trie-vs-path type resolution functions. More...

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::TableLookupEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0
	Four trie-vs-path type resolution functions. More...

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, etable::AnalyticEtableEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &other, TrieCountPairBase &cp, hbonds::HBondEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0
	The same methods again, for Hack Elec E. More...

virtual void	resolve_trie_vs_trie (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0
	Four trie-vs-path type resolution functions. More...

virtual void	resolve_trie_vs_path (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< elec::ElecAtom, etable::etrie::CountPairDataGeneric > const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, elec::FA_ElecEnergy const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0
	Four trie-vs-path type resolution functions. More...

virtual void	resolve_trie_vs_path (RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, methods::MMLJEnergyInter const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	resolve_trie_vs_trie (RotamerTrieBase const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, ObjexxFCL::FArray2D< core::PackerEnergy > &pair_energy_table, ObjexxFCL::FArray2D< core::PackerEnergy > &temp_table) const =0

virtual void	trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0
	Four trie-vs-path type resolution functions. More...

virtual void	resolve_trie_vs_path (RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

virtual void	resolve_trie_vs_path (RotamerTrieBase const &other, TrieCountPairBase &cp, vdwaals::VDWTrieEvaluator const &sfxn, utility::vector1< core::PackerEnergy > &pair_energy_vector, utility::vector1< core::PackerEnergy > &temp_vector) const =0

Public Member Functions inherited from core::conformation::AbstractRotamerTrie
virtual	~AbstractRotamerTrie ()

Private Attributes
std::map< Size, Size >	resid_2_connid_map_

Constructor & Destructor Documentation

virtual core::scoring::trie::RotamerTrieBase::~RotamerTrieBase ( )

inlinevirtual

Member Function Documentation

bool core::scoring::trie::RotamerTrieBase::connection_exists_to_residue ( Size resid ) const

inline

References resid_2_connid_map_.

Referenced by get_count_pair_data_for_residue().

Size core::scoring::trie::RotamerTrieBase::connection_id_for_residue ( Size resid ) const

inline

References resid_2_connid_map_.

Referenced by get_count_pair_data_for_residue().

Size core::scoring::trie::RotamerTrieBase::get_count_pair_data_for_residue ( Size other_residue ) const

inline

References connection_exists_to_residue(), and connection_id_for_residue().

virtual void core::scoring::trie::RotamerTrieBase::print ( ) const

pure virtual

Useful Functions.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_path().

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

This function is called when the coarse etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		hbonds::HBondEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

This function is called when hbond energy function gets mixed up with non-hbond tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &	other,
		TrieCountPairBase &	cp,
		hbonds::HBondEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairDataGeneric > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

This function is called when non-elec tries get mixed up with the FA_ElecEnergy function It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

This function is called when the mm lj inter energy function get mixed up with other tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

This function is called when the mm lj inter energy function get mixed up with other tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

Referenced by core::scoring::trie::RotamerTrie< AT, CPDATA >::trie_vs_trie().

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< etable::etrie::EtableAtom, etable::etrie::CountPairDataGeneric > const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

This function is called when the coarse etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		hbonds::HBondEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

This function is called when hbond energy function get mixed up with non-hbond tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const &	other,
		TrieCountPairBase &	cp,
		hbonds::HBondEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< elec::ElecAtom, etable::etrie::CountPairDataGeneric > const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

This function is called when the etable energy function get mixed up with non-etable tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< core::scoring::mm::mmtrie::MMEnergyTableAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

This function is called when the mm lj inter energy function get mixed up with other tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_1 > const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_2 > const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrie< core::scoring::vdwaals::VDWAtom, etable::etrie::CountPairData_1_3 > const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::resolve_trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

This function is called when the mm lj inter energy function get mixed up with other tries. It produces a utility_exit call.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

void core::scoring::trie::RotamerTrieBase::set_resid_2_connection_entry	(	Size	resid,
		Size	connid
	)

inline

The trie contains mutable data to record which peice of count-pair data it is to use in the upcoming/current trie-vs-trie application. This data could be held externally to the trie, and passed in as a parameter to the tvt call, but I believe the code will be faster if there is no ambiguity over where to look for count pair information.

Depricated

References resid_2_connid_map_.

Referenced by core::scoring::trie::create_trie().

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Four trie-vs-path type resolution functions.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

Referenced by core::scoring::etable::AnalyticEtableEvaluator::trie_vs_path(), and core::scoring::etable::TableLookupEvaluator::trie_vs_path().

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Four trie-vs-path type resolution functions.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		hbonds::HBondEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Four trie-vs-path type resolution functions.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Four trie-vs-path type resolution functions.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_path	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		utility::vector1< core::PackerEnergy > &	pair_energy_vector,
		utility::vector1< core::PackerEnergy > &	temp_vector
	)		const

pure virtual

Four trie-vs-path type resolution functions.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::TableLookupEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

Referenced by core::scoring::etable::AnalyticEtableEvaluator::trie_vs_trie(), and core::scoring::etable::TableLookupEvaluator::trie_vs_trie().

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		etable::AnalyticEtableEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		hbonds::HBondEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		elec::FA_ElecEnergy const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

The same methods again, for Hack Elec E.

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		methods::MMLJEnergyInter const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

virtual void core::scoring::trie::RotamerTrieBase::trie_vs_trie	(	RotamerTrieBase const &	other,
		TrieCountPairBase &	cp,
		vdwaals::VDWTrieEvaluator const &	sfxn,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	pair_energy_table,
		ObjexxFCL::FArray2D< core::PackerEnergy > &	temp_table
	)		const

pure virtual

Implemented in core::scoring::trie::RotamerTrie< AT, CPDATA >.

Member Data Documentation

std::map< Size, Size > core::scoring::trie::RotamerTrieBase::resid_2_connid_map_

private

Referenced by connection_exists_to_residue(), connection_id_for_residue(), and set_resid_2_connection_entry().

The documentation for this class was generated from the following file:

src/core/scoring/trie/RotamerTrieBase.hh

Public Member Functions

Private Attributes

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation