Rosetta Core  2014.35
core::scoring::constraints::BackboneStubConstraint Member List

This is the complete list of members for core::scoring::constraints::BackboneStubConstraint, including all inherited members.

ang_cst_core::scoring::constraints::BackboneStubConstraintprivatestatic
atom(Size const index) const core::scoring::constraints::BackboneStubConstraintinlinevirtual
atom_ids_core::scoring::constraints::BackboneStubConstraintprivate
AtomID typedefcore::scoring::constraints::Constraint
backbone1_2_target_core::scoring::constraints::BackboneStubConstraintprivate
backbone1_target_core::scoring::constraints::BackboneStubConstraintprivate
backbone2_target_core::scoring::constraints::BackboneStubConstraintprivate
backbone_atom1_id_core::scoring::constraints::BackboneStubConstraintprivate
backbone_atom2_id_core::scoring::constraints::BackboneStubConstraintprivate
BackboneStubConstraint(pose::Pose const &pose, Size const seqpos, AtomID const &fixed_atom_id, pose::Pose const &target_pose, Size const target_seqpos, core::Real const &superposition_bonus, core::Real const &force_constant)core::scoring::constraints::BackboneStubConstraint
BackboneStubConstraint(pose::Pose const &pose, Size const seqpos, AtomID const &fixed_atom_id, conformation::Residue const &target_rsd, core::Real const &superposition_bonus, core::Real const &force_constant, std::string const &sidechain_atom_name, std::string const &primary_backbone_atom_name, std::string const &backbone_atom1_name, std::string const &backbone_atom2_name)core::scoring::constraints::BackboneStubConstraint
BackboneStubConstraint(pose::Pose const &pose, Size const seqpos, AtomID const &fixed_atom_id, conformation::Residue const &target_rsd, core::Real const &superposition_bonus, core::Real const &force_constant)core::scoring::constraints::BackboneStubConstraint
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)core::scoring::constraints::Constraintinlinevirtual
clone() const core::scoring::constraints::BackboneStubConstraintvirtual
core::scoring::constraints::Constraint::clone(core::scoring::func::FuncOP) const core::scoring::constraints::Constraintinlinevirtual
Constraint(ScoreType const &t)core::scoring::constraints::Constraintinline
dist(core::pose::Pose const &) const core::scoring::constraints::Constraintinlinevirtual
dist(core::scoring::func::XYZ_Func const &) const core::scoring::constraints::Constraintinlinevirtual
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const core::scoring::constraints::Constraintinlinevirtual
fill_f1_f2(AtomID const &atom, func::XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const core::scoring::constraints::BackboneStubConstraintvirtual
core::scoring::constraints::Constraint::fill_f1_f2(AtomID const &atom, core::scoring::func::XYZ_Func const &xyz_func, Vector &F1, Vector &F2, EnergyMap const &weights) const =0core::scoring::constraints::Constraintpure virtual
fixed_atom_id_core::scoring::constraints::BackboneStubConstraintprivate
fixed_reference_point_core::scoring::constraints::BackboneStubConstraintprivate
force_constant_core::scoring::constraints::BackboneStubConstraintprivate
get_func() const core::scoring::constraints::Constraintinlinevirtual
natoms() const core::scoring::constraints::BackboneStubConstraintinlinevirtual
operator!=(Constraint const &other) const core::scoring::constraints::Constraintinline
operator==(Constraint const &other) const core::scoring::constraints::BackboneStubConstraintvirtual
primary_atom_id_core::scoring::constraints::BackboneStubConstraintprivate
primary_backbone_target_core::scoring::constraints::BackboneStubConstraintprivate
primary_sidechain_target_core::scoring::constraints::BackboneStubConstraintprivate
read_constraint(std::istream &, core::pose::Pose const &)core::scoring::constraints::Constraintinlinevirtual
read_data(std::istream &)core::scoring::constraints::Constraintinlinevirtual
read_def(std::istream &, pose::Pose const &, core::scoring::func::FuncFactory const &)core::scoring::constraints::Constraintinlinevirtual
remap_resid(core::id::SequenceMapping const &) const core::scoring::constraints::Constraintinlinevirtual
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=NULL) const core::scoring::constraints::BackboneStubConstraintvirtual
residues() const core::scoring::constraints::Constraintvirtual
score(func::XYZ_Func const &xyz_func, EnergyMap const &weights, EnergyMap &emap) const core::scoring::constraints::BackboneStubConstraintvirtual
core::scoring::constraints::Constraint::score(pose::Pose const &) const core::scoring::constraints::Constraintinlinevirtual
core::scoring::constraints::Constraint::score(conformation::Conformation const &) const core::scoring::constraints::Constraintinlinevirtual
score_type() const core::scoring::constraints::Constraintinline
seqpos() const core::scoring::constraints::BackboneStubConstraint
seqpos_core::scoring::constraints::BackboneStubConstraintprivate
setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const core::scoring::constraints::Constraintinlinevirtual
setup_for_scoring(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const core::scoring::constraints::Constraintinlinevirtual
show(std::ostream &out) const core::scoring::constraints::BackboneStubConstraintvirtual
show_def(std::ostream &, pose::Pose const &) const core::scoring::constraints::Constraintinlinevirtual
show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const core::scoring::constraints::Constraintvirtual
sidechain_atom_id_core::scoring::constraints::BackboneStubConstraintprivate
sidechain_target_core::scoring::constraints::BackboneStubConstraintprivate
steal_def(pose::Pose const &)core::scoring::constraints::Constraintinlinevirtual
superposition_bonus_core::scoring::constraints::BackboneStubConstraintprivate
to_string() const core::scoring::constraints::Constraintinline
type() const core::scoring::constraints::BackboneStubConstraintinlinevirtual
~BackboneStubConstraint()core::scoring::constraints::BackboneStubConstraintinlinevirtual
~Constraint()core::scoring::constraints::Constraintvirtual