Rosetta Core  2014.35
core::pack::interaction_graph::SymmOnTheFlyInteractionGraph Member List

This is the complete list of members for core::pack::interaction_graph::SymmOnTheFlyInteractionGraph, including all inherited members.

aa_submatrix_energies_retrievable() const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
aatype_for_node_state(int node_ind, int node_state) const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
add_edge(int node1, int node2)core::pack::interaction_graph::InteractionGraphBase
add_ProCorrection_values_for_edge(int node1, int node2, int node_not_neccessarily_proline, int state, core::PackerEnergy bb_nonprobb_E, core::PackerEnergy bb_probb_E, core::PackerEnergy sc_nonprobb_E, core::PackerEnergy sc_probb_E)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
add_to_nodes_one_body_energy(int node_ind, utility::vector1< core::PackerEnergy > const &one_body_energies)core::pack::interaction_graph::InteractionGraphBase
add_to_nodes_one_body_energy(int node_ind, ObjexxFCL::FArray1< core::PackerEnergy > const &one_body_energies)core::pack::interaction_graph::InteractionGraphBase
add_to_nodes_one_body_energy(int node_ind, int state_id, core::PackerEnergy const one_body_energy)core::pack::interaction_graph::InteractionGraphBase
add_to_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &one_body_energies)core::pack::interaction_graph::InteractionGraphBase
add_to_one_body_energy_for_node_state(int node_ind, int state, core::PackerEnergy one_body_energy)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
any_vertex_state_unassigned() const core::pack::interaction_graph::InteractionGraphBase
blanket_assign_state_0()=0core::pack::interaction_graph::InteractionGraphBasepure virtual
commit_considered_substitution()=0core::pack::interaction_graph::InteractionGraphBasepure virtual
consider_substitution(int node_ind, int new_state, core::PackerEnergy &delta_energy, core::PackerEnergy &prev_energy_for_node)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
count_connected_components_and_initialize_vertex_groups()core::pack::interaction_graph::InteractionGraphBase
count_dynamic_memory() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphvirtual
count_static_memory() const =0core::pack::interaction_graph::InteractionGraphBaseprotectedpure virtual
create_new_edge(int index1, int index2)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
create_new_node(int node_index, int num_states)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
distinguish_backbone_and_sidechain_for_node(int node) const core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
distinguish_backbone_and_sidechain_for_node(int node, bool setting)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
drop_all_edges_for_node(int node)core::pack::interaction_graph::InteractionGraphBase
drop_edge(std::list< EdgeBase * >::iterator edge)core::pack::interaction_graph::InteractionGraphBaseprotected
edge_list_iterator_at_end() const core::pack::interaction_graph::InteractionGraphBase
find_edge(int node1, int node2) const core::pack::interaction_graph::InteractionGraphBase
find_edge(int node1, int node2)core::pack::interaction_graph::InteractionGraphBase
FixedBBInteractionGraph(int num_nodes)core::pack::interaction_graph::FixedBBInteractionGraphinline
force_aa_neighbors_for_edge(int node1, int node2, int node1aa, int node2aa)core::pack::interaction_graph::FixedBBInteractionGraph
force_all_aa_neighbors_for_edge(int node1, int node2)core::pack::interaction_graph::FixedBBInteractionGraph
get_aa_submatrix_energies_for_edge(int node1, int node2, int node1aa, int node2aa) const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
get_edge() const core::pack::interaction_graph::InteractionGraphBase
get_edge_exists(int node1, int node2)core::pack::interaction_graph::InteractionGraphBase
get_edge_list_begin()core::pack::interaction_graph::InteractionGraphBaseinline
get_edge_list_begin() const core::pack::interaction_graph::InteractionGraphBaseinline
get_edge_list_end() const core::pack::interaction_graph::InteractionGraphBaseinline
get_edge_memory_usage() const =0core::pack::interaction_graph::InteractionGraphBasepure virtual
get_edge_weight(int node1, int node2) const core::pack::interaction_graph::InteractionGraphBase
get_energy_current_state_assignment()=0core::pack::interaction_graph::InteractionGraphBasepure virtual
get_energy_sum_for_vertex_group(int group_id)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
get_fixedbb_edge(int node1, int node2) const core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_fixedbb_edge(int node1, int node2)core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_fixedbb_node(int node_index) const core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_fixedbb_node(int node_index)core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_node(int index) const core::pack::interaction_graph::InteractionGraphBaseinline
get_node_state_offset(int index) const core::pack::interaction_graph::InteractionGraphBaseinlineprotected
get_num_aatypes() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinlinevirtual
get_num_edges() const core::pack::interaction_graph::InteractionGraphBaseinline
get_num_nodes() const core::pack::interaction_graph::InteractionGraphBaseinline
get_num_nodes_v() const core::pack::interaction_graph::InteractionGraphBaseinlinevirtual
get_num_restype_groups() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
get_num_rpe_calculations_count() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
get_num_states_for_node(int node) const core::pack::interaction_graph::InteractionGraphBase
get_num_total_states() const core::pack::interaction_graph::InteractionGraphBaseinline
get_on_the_fly_node(int node_index)core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
get_on_the_fly_node(int node_index) const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
get_one_body_energy_for_node_state(int node, int state)core::pack::interaction_graph::SymmOnTheFlyInteractionGraphvirtual
get_sparse_aa_info_for_edge(int node1, int node2, int node1aa, int node2aa)core::pack::interaction_graph::FixedBBInteractionGraph
get_two_body_energy_for_edge(int node1, int node2, int state_node1, int state_node2) const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
get_vertex_member_of_energy_sum_group(int node_index, int group_id)core::pack::interaction_graph::InteractionGraphBaseinline
getTotalMemoryUsage() const core::pack::interaction_graph::InteractionGraphBasevirtual
HTReal typedefcore::pack::interaction_graph::SymmOnTheFlyInteractionGraph
increment_edge_list_iterator() const core::pack::interaction_graph::InteractionGraphBase
initialize(rotamer_set::RotamerSetsBase const &rot_sets)core::pack::interaction_graph::SymmOnTheFlyInteractionGraphvirtual
InteractionGraphBase(int num_nodes)core::pack::interaction_graph::InteractionGraphBase
mine(EdgeBase const *edge) const core::pack::interaction_graph::InteractionGraphBaseinlineprotected
non_const_pose()core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
note_long_range_interactions_exist_for_edge(int node1, int node2)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
note_rpe_calculated() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
note_short_range_interactions_exist_for_edge(int node1, int node2)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
note_vertex_reached(int node_index)core::pack::interaction_graph::InteractionGraphBase
num_restype_groups_core::pack::interaction_graph::SymmOnTheFlyInteractionGraphprivate
num_rpe_calcs_core::pack::interaction_graph::SymmOnTheFlyInteractionGraphmutableprivate
output_connectivity(std::ostream &os) const core::pack::interaction_graph::InteractionGraphBase
output_dimacs(std::ostream &os) const core::pack::interaction_graph::InteractionGraphBase
Pose typedefcore::pack::interaction_graph::SymmOnTheFlyInteractionGraph
pose() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
pose_core::pack::interaction_graph::SymmOnTheFlyInteractionGraphprivate
PoseOP typedefcore::pack::interaction_graph::SymmOnTheFlyInteractionGraph
prepare_for_simulated_annealing()core::pack::interaction_graph::InteractionGraphBasevirtual
print() const core::pack::interaction_graph::InteractionGraphBaseinlinevirtual
print_current_state_assignment() const =0core::pack::interaction_graph::InteractionGraphBasepure virtual
print_vertex_groups()core::pack::interaction_graph::InteractionGraphBase
print_vertices() const core::pack::interaction_graph::InteractionGraphBase
reset_edge_list_iterator_for_node(int node_index) const core::pack::interaction_graph::InteractionGraphBase
reset_rpe_calculations_count()core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
score_function() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
score_function_core::pack::interaction_graph::SymmOnTheFlyInteractionGraphprivate
ScoreFunction typedefcore::pack::interaction_graph::SymmOnTheFlyInteractionGraph
ScoreFunctionOP typedefcore::pack::interaction_graph::SymmOnTheFlyInteractionGraph
set_edge_weight(int node1, int node2, Real edge_weight)core::pack::interaction_graph::InteractionGraphBase
set_errorfull_deltaE_threshold(core::PackerEnergy deltaE)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
set_network_state(ObjexxFCL::FArray1_int &node_states)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
set_num_states_for_node(int node, int num_states)core::pack::interaction_graph::InteractionGraphBase
set_number_of_energy_sum_vertex_groups(int num_groups)core::pack::interaction_graph::InteractionGraphBase
set_one_body_energy_for_node_state(int node_ind, int state, core::PackerEnergy one_body_energy)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
set_pose(Pose const &)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
set_residues_adjacent_for_subunit_pair_for_edge(int node1, int node2, int asu_node_index, int other_node_subunit)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
set_score_function(ScoreFunction const &)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
set_sparse_aa_info_for_edge(int node1, int node2, ObjexxFCL::FArray2_bool const &sparse_conn_info)core::pack::interaction_graph::FixedBBInteractionGraph
set_state_for_node(int node_ind, int new_state)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
set_vertex_member_of_group(int vertex, int group)core::pack::interaction_graph::InteractionGraphBase
symm_info() const core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
symm_info_core::pack::interaction_graph::SymmOnTheFlyInteractionGraphprivate
symmetric_transform(Size dst_subunit) const core::pack::interaction_graph::SymmOnTheFlyInteractionGraphinline
symmetric_transforms_core::pack::interaction_graph::SymmOnTheFlyInteractionGraphprivate
SymmOnTheFlyInteractionGraph(int num_nodes)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
update_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &old_energy1b, ObjexxFCL::FArray1< core::PackerEnergy > &new_energy1b)core::pack::interaction_graph::InteractionGraphBase
vertex_already_reached(int node_index)core::pack::interaction_graph::InteractionGraphBase
zero_one_body_energies_for_node(int node)core::pack::interaction_graph::InteractionGraphBase
zero_one_body_energy_for_node_state(int node_ind, int state)core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
~FixedBBInteractionGraph()core::pack::interaction_graph::FixedBBInteractionGraphinlinevirtual
~InteractionGraphBase()core::pack::interaction_graph::InteractionGraphBasevirtual
~SymmOnTheFlyInteractionGraph()core::pack::interaction_graph::SymmOnTheFlyInteractionGraph