core::conformation::membrane Namespace Reference

Classes
class	EXCN_Illegal_Arguments
	Illegal Arguments Exception. More...
class	EXCN_Membrane
	Parent Exception - Exception Membrane. More...
class	EXCN_Membrane_Bounds
	Membrane Out of Bounds Exception. More...
class	EXCN_MembraneFoldTree
	Fold tree Exception for membrane proteins. More...
class	EXCN_NonMembrane
	Non Membrane Pose Exception. More...
class	EXCN_Resource_Definition
	Resource Manager Exception. More...
class	EXCN_VirtualRsd
	Virtual Residue Definition Exception. More...
class	LipidAccInfo
	Membrane Lipid Accessibility Data. More...
class	MembraneInfo
	Membrane Info Object - Contains information for describing a membrane protein in Rosetta, including the position of the membrane virtual residue, spanning topology, and lips acc data. More...
class	MembranePlanes
	Store location of top and bottom marker residues for visualizing location of the membrane planes in a simulation. Accessible via membrane info. More...
class	Span
class	SpanningTopology

Typedefs
typedef utility::pointer::owning_ptr < LipidAccInfo >	LipidAccInfoOP
typedef utility::pointer::owning_ptr < LipidAccInfo const >	LipidAccInfoCOP
typedef utility::pointer::owning_ptr < MembraneInfo >	MembraneInfoOP
typedef utility::pointer::owning_ptr < MembraneInfo const >	MembraneInfoCOP
typedef utility::pointer::owning_ptr < MembranePlanes >	MembranePlanesOP
typedef utility::pointer::owning_ptr < MembranePlanes const >	MembranePlanesCOP
typedef utility::pointer::owning_ptr < Span >	SpanOP
typedef utility::pointer::owning_ptr < Span const >	SpanCOP
typedef utility::pointer::owning_ptr < SpanningTopology >	SpanningTopologyOP
typedef utility::pointer::owning_ptr < SpanningTopology const >	SpanningTopologyCOP

Enumerations
enum	MEM { thickness = 1, center = 2, normal = 3 }

Functions
utility::vector1< std::string >	spanfile_names ()
std::string	spanfile_name ()

Typedef Documentation

typedef utility::pointer::owning_ptr< LipidAccInfo const > core::conformation::membrane::LipidAccInfoCOP

typedef utility::pointer::owning_ptr< LipidAccInfo > core::conformation::membrane::LipidAccInfoOP

typedef utility::pointer::owning_ptr< MembraneInfo const > core::conformation::membrane::MembraneInfoCOP

typedef utility::pointer::owning_ptr< MembraneInfo > core::conformation::membrane::MembraneInfoOP

typedef utility::pointer::owning_ptr< MembranePlanes const > core::conformation::membrane::MembranePlanesCOP

typedef utility::pointer::owning_ptr< MembranePlanes > core::conformation::membrane::MembranePlanesOP

typedef utility::pointer::owning_ptr< Span const > core::conformation::membrane::SpanCOP

typedef utility::pointer::owning_ptr< SpanningTopology const > core::conformation::membrane::SpanningTopologyCOP

typedef utility::pointer::owning_ptr< SpanningTopology > core::conformation::membrane::SpanningTopologyOP

typedef utility::pointer::owning_ptr< Span > core::conformation::membrane::SpanOP

Enumeration Type Documentation

enum core::conformation::membrane::MEM

Enumerator
thickness
center
normal

Function Documentation

std::string core::conformation::membrane::spanfile_name

(

)

References spanfile_names().

utility::vector1< std::string > core::conformation::membrane::spanfile_names

(

)

References option, spanfiles, user, and utility_exit_with_message.

Referenced by spanfile_name().