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core
scoring
scoring → chemical Relation
File in src/core/scoring
Includes file in src/core/chemical
constraints
/
AmbiguousNMRDistanceConstraint.cc
AA.hh
constraints
/
AmbiguousNMRDistanceConstraint.cc
ResidueType.hh
constraints
/
AmbiguousNMRDistanceConstraint.hh
AA.hh
constraints
/
AngleConstraint.cc
ResidueType.hh
APBSWrapper.cc
AtomType.hh
APBSWrapper.cc
ResidueType.hh
etable
/
atom_pair_energy_inline.hh
AtomType.hh
constraints
/
AtomPairConstraint.cc
ResidueType.hh
AtomVDW.cc
AtomType.hh
AtomVDW.cc
AtomTypeSet.hh
AtomVDW.cc
ChemicalManager.hh
AtomVDW.hh
AtomTypeSet.fwd.hh
constraints
/
BackboneStubConstraint.cc
ChemicalManager.hh
constraints
/
BackboneStubConstraint.cc
ResidueType.hh
constraints
/
BackboneStubConstraint.cc
ResidueTypeSet.hh
constraints
/
BackboneStubLinearConstraint.cc
ChemicalManager.hh
constraints
/
BackboneStubLinearConstraint.cc
ResidueType.hh
constraints
/
BackboneStubLinearConstraint.cc
ResidueTypeSet.hh
dna
/
base_geometry.cc
AA.hh
dna
/
base_geometry.cc
ResidueType.hh
dna
/
base_geometry.hh
ResidueType.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
AA.hh
etable
/
BaseEtableEnergy.tmpl.hh
Adduct.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
Adduct.hh
etable
/
BaseEtableEnergy.tmpl.hh
AtomICoor.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
AtomICoor.hh
etable
/
BaseEtableEnergy.tmpl.hh
AtomType.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
AtomType.hh
etable
/
BaseEtableEnergy.tmpl.hh
AtomTypeSet.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
AtomTypeSet.hh
etable
/
BaseEtableEnergy.tmpl.hh
ChemicalManager.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
ChemicalManager.hh
etable
/
BaseEtableEnergy.tmpl.hh
ElementSet.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
orbitals
/
ICoorOrbitalData.hh
etable
/
BaseEtableEnergy.tmpl.hh
MMAtomType.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
MMAtomTypeSet.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
orbitals
/
OrbitalType.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
orbitals
/
OrbitalTypeSet.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
ResConnID.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
ResConnID.hh
etable
/
BaseEtableEnergy.tmpl.hh
ResidueConnection.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
ResidueConnection.hh
etable
/
BaseEtableEnergy.tmpl.hh
ResidueType.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
ResidueType.hh
etable
/
BaseEtableEnergy.tmpl.hh
ResidueTypeSet.fwd.hh
etable
/
BaseEtableEnergy.tmpl.hh
types.hh
etable
/
BaseEtableEnergy.tmpl.hh
VariantType.fwd.hh
constraints
/
BigBinConstraint.cc
ResidueType.hh
carbon_hbonds
/
CarbonHBondEnergy.cc
AtomType.hh
carbon_hbonds
/
CarbonHBondPotential.cc
AtomTypeSet.hh
carbon_hbonds
/
CarbonHBondPotential.cc
ChemicalManager.hh
methods
/
CartesianBondedEnergy.cc
AA.hh
methods
/
CartesianBondedEnergy.cc
AtomType.hh
methods
/
CartesianBondedEnergy.cc
ChemicalManager.fwd.hh
methods
/
CartesianBondedEnergy.cc
Patch.hh
methods
/
CartesianBondedEnergy.cc
ResidueConnection.hh
methods
/
CartesianBondedEnergy.cc
ResidueType.hh
methods
/
CartesianBondedEnergy.cc
ResidueTypeSet.hh
methods
/
CartesianBondedEnergy.cc
VariantType.hh
methods
/
CartesianBondedEnergy.hh
ResidueType.fwd.hh
methods
/
CenPairEnergy.cc
VariantType.hh
methods
/
CenRotEnvEnergy.cc
VariantType.hh
CenRotEnvPairPotential.cc
AA.hh
CenRotEnvPairPotential.hh
AA.hh
methods
/
CenRotPairEnergy.cc
AA.hh
methods
/
CenRotPairEnergy.cc
VariantType.hh
disulfides
/
CentroidDisulfideEnergy.cc
ChemicalManager.fwd.hh
disulfides
/
CentroidDisulfideEnergy.cc
ResidueTypeSet.hh
disulfides
/
CentroidDisulfideEnergy.cc
VariantType.hh
disulfides
/
CentroidDisulfideEnergyContainer.cc
ResidueConnection.hh
disulfides
/
CentroidDisulfideEnergyContainer.cc
ResidueType.hh
disulfides
/
CentroidDisulfideEnergyContainer.cc
ResidueTypeSet.hh
disulfides
/
CentroidDisulfideEnergyContainer.cc
VariantType.hh
disulfides
/
CentroidDisulfideEnergyContainer.hh
ResidueType.fwd.hh
disulfides
/
CentroidDisulfidePotential.cc
ChemicalManager.hh
disulfides
/
CentroidDisulfidePotential.cc
ResidueTypeSet.hh
methods
/
chainbreak_util.cc
VariantType.hh
methods
/
ChainbreakEnergy.cc
VariantType.hh
etable
/
CoarseEtableEnergy.cc
ChemicalManager.fwd.hh
constraints
/
ConstraintIO.cc
ResidueType.hh
geometric_solvation
/
ContextIndependentGeometricSolEnergy.cc
rna
/
util.hh
etable
/
count_pair
/
CountPairFactory.cc
ResidueConnection.hh
etable
/
count_pair
/
CountPairGeneric.cc
AtomType.hh
etable
/
count_pair
/
CountPairGeneric.cc
ResidueConnection.hh
etable
/
count_pair
/
CountPairGeneric.hh
ResidueType.fwd.hh
methods
/
CSD_TorsionEnergy.cc
ResidueType.hh
methods
/
D2H_SA_Energy.cc
AtomType.hh
methods
/
D2H_SA_Energy.cc
ResidueType.hh
geometric_solvation
/
DatabaseOccSolEne.cc
AtomTypeSet.hh
geometric_solvation
/
DatabaseOccSolEne.cc
ChemicalManager.hh
geometric_solvation
/
DatabaseOccSolEne.hh
AtomTypeSet.fwd.hh
interface_
/
DDPlookup.hh
AA.hh
methods
/
dfire
/
DFIRE_Energy.cc
ResidueType.hh
methods
/
dfire
/
DFIRE_Potential.cc
ResidueType.hh
dna
/
DirectReadoutPotential.cc
AA.hh
methods
/
DistanceChainbreakEnergy.cc
VariantType.hh
disulfides
/
DisulfideMatchingEnergy.cc
VariantType.hh
disulfides
/
DisulfideMatchingEnergyContainer.cc
ResidueConnection.hh
disulfides
/
DisulfideMatchingEnergyContainer.cc
ResidueType.hh
disulfides
/
DisulfideMatchingEnergyContainer.cc
ResidueTypeSet.hh
disulfides
/
DisulfideMatchingEnergyContainer.cc
VariantType.hh
disulfides
/
DisulfideMatchingEnergyContainer.hh
ResidueType.fwd.hh
dna
/
DNA_BasePotential.cc
AA.hh
dna
/
DNA_BasePotential.cc
ResidueType.hh
dna
/
DNABFormPotential.cc
AA.hh
dna
/
DNATorsionPotential.cc
AA.hh
electron_density
/
ElecDensAllAtomCenEnergy.cc
AA.hh
electron_density
/
ElecDensAllAtomCenEnergy.cc
AtomType.hh
electron_density_atomwise
/
ElecDensAtomwiseEnergy.cc
AA.hh
electron_density_atomwise
/
ElecDensAtomwiseEnergy.cc
AtomType.hh
electron_density
/
ElecDensCenEnergy.cc
AA.hh
electron_density
/
ElecDensEnergy.cc
AA.hh
electron_density
/
ElecDensEnergy.cc
AtomType.hh
electron_density
/
ElectronDensity.cc
AtomType.hh
electron_density
/
ElectronDensity.cc
AtomTypeSet.hh
electron_density_atomwise
/
ElectronDensityAtomwise.cc
AtomType.hh
electron_density_atomwise
/
ElectronDensityAtomwise.cc
AtomTypeSet.hh
methods
/
EnergyMethodOptions.cc
ChemicalManager.fwd.hh
methods
/
EnvEnergy.cc
VariantType.hh
EnvPairPotential.cc
AA.hh
EnvPairPotential.cc
VariantType.hh
methods
/
EnvSmoothEnergy.cc
AA.hh
methods
/
EnvSmoothEnergy.cc
VariantType.hh
methods
/
EnvSmoothEnergy.hh
AA.hh
etable
/
Etable.cc
AtomType.hh
etable
/
Etable.hh
AtomTypeSet.hh
etable
/
EtableEnergy.cc
VariantType.hh
geometric_solvation
/
ExactOccludedHbondSolEnergy.cc
AtomType.hh
geometric_solvation
/
ExactOccludedHbondSolEnergy.cc
AtomTypeSet.hh
geometric_solvation
/
ExactOccludedHbondSolEnergy.cc
ChemicalManager.hh
geometric_solvation
/
ExactOccludedHbondSolEnergy.cc
ResConnID.hh
geometric_solvation
/
ExactOccludedHbondSolEnergy.cc
ResidueType.hh
geometric_solvation
/
ExactOccludedHbondSolEnergy.hh
AtomTypeSet.fwd.hh
elec
/
FA_ElecEnergy.hh
AtomType.hh
elec
/
FA_ElecEnergyAroAll.cc
AtomType.hh
elec
/
FA_ElecEnergyAroAro.cc
AtomType.hh
constraints
/
FabConstraint.cc
ResidueType.hh
facts
/
FACTSEnergy.cc
AtomType.hh
facts
/
FACTSPose.cc
ResidueTypeSet.hh
facts
/
FACTSPotential.cc
AA.hh
facts
/
FACTSPotential.cc
AtomType.hh
facts
/
FACTSPotential.cc
AtomTypeSet.hh
facts
/
FACTSPotential.cc
ResidueTypeSet.hh
facts
/
FACTSPotential.cc
VariantType.hh
facts
/
FACTSPotential.fwd.hh
ResidueType.hh
facts
/
FACTSResidue.cc
AA.hh
facts
/
FACTSResidue.cc
AtomType.hh
facts
/
FACTSResidue.cc
AtomTypeSet.fwd.hh
facts
/
FACTSResidue.cc
AtomTypeSet.hh
facts
/
FACTSResidue.cc
ChemicalManager.hh
facts
/
FACTSResidue.cc
ElementSet.fwd.hh
facts
/
FACTSResidue.cc
orbitals
/
OrbitalTypeSet.fwd.hh
facts
/
FACTSResidue.cc
residue_io.hh
facts
/
FACTSResidue.cc
ResidueTypeSet.fwd.hh
facts
/
FACTSResidue.cc
VariantType.hh
membrane
/
FaMPEnvSmoothEnergy.cc
AA.hh
membrane
/
FaMPEnvSmoothEnergy.hh
AA.hh
electron_density
/
FastDensEnergy.cc
AA.hh
electron_density
/
FastDensEnergy.cc
AtomType.hh
saxs
/
FastSAXSEnergy.cc
AA.hh
saxs
/
FastSAXSEnergy.cc
AtomType.hh
saxs
/
FastSAXSEnergy.hh
AA.hh
func
/
FourPointsFunc.cc
ResidueType.hh
custom_pair_distance
/
FullatomCustomPairDistanceEnergy.cc
ChemicalManager.hh
custom_pair_distance
/
FullatomCustomPairDistanceEnergy.cc
ResidueTypeSet.hh
custom_pair_distance
/
FullatomCustomPairDistanceEnergy.hh
ResidueType.fwd.hh
disulfides
/
FullatomDisulfideEnergy.cc
VariantType.hh
disulfides
/
FullatomDisulfideEnergyContainer.cc
ResidueConnection.hh
disulfides
/
FullatomDisulfideEnergyContainer.cc
ResidueType.hh
disulfides
/
FullatomDisulfideEnergyContainer.cc
VariantType.hh
disulfides
/
FullatomDisulfideEnergyContainer.hh
ResidueType.fwd.hh
methods
/
GaussianOverlapEnergy.cc
AA.hh
methods
/
GaussianOverlapEnergy.cc
AtomType.hh
methods
/
GaussianOverlapEnergy.cc
VariantType.hh
GenBornPotential.cc
AtomType.hh
GenBornPotential.cc
AtomTypeSet.hh
GenBornPotential.cc
ResidueTypeSet.hh
GenBornPotential.cc
VariantType.hh
geometric_solvation
/
GeometricSolEnergyEvaluator.cc
AtomType.hh
geometric_solvation
/
GeometricSolEnergyEvaluator.cc
types.hh
geometric_solvation
/
GeometricSolEnergyEvaluator.cc
rna
/
util.hh
methods
/
GoapEnergy.cc
ResidueTypeSet.hh
methods
/
GoapEnergy.fwd.hh
ResidueType.hh
hbonds
/
HBondEnergy.cc
AtomType.hh
hbonds
/
HBondEnergy.cc
AtomTypeSet.hh
hbonds
/
HBondEnergy.cc
rna
/
RNA_ResidueType.hh
hbonds
/
hbonds.cc
AtomType.hh
hbonds
/
hbonds.cc
rna
/
RNA_ResidueType.hh
hbonds
/
hbonds_geom.cc
AtomType.hh
hbonds
/
hbonds_geom.cc
AtomTypeSet.hh
hbonds
/
hbonds_geom.cc
ResidueType.hh
hbonds
/
hbonds_geom.cc
rna
/
RNA_ResidueType.hh
hbonds
/
hbonds_geom.hh
types.hh
hbonds
/
HBondTypeManager.cc
types.hh
hbonds
/
HBondTypeManager.hh
types.hh
methods
/
HybridVDW_Energy.cc
ChemicalManager.fwd.hh
methods
/
HybridVDW_Energy.cc
ResidueTypeSet.hh
packstat
/
LeeRichards.cc
AtomType.hh
sasa
/
LeGrandSasa.cc
AtomType.hh
sasa
/
LeGrandSasa.cc
AtomTypeSet.hh
methods
/
LinearChainbreakEnergy.cc
VariantType.hh
methods
/
LK_BallEnergy.cc
AtomType.hh
methods
/
LK_BallInfo.cc
AtomType.hh
methods
/
LK_BallInfo.cc
AtomTypeSet.hh
methods
/
LK_BallInfo.cc
types.hh
methods
/
LK_hack.cc
AtomType.hh
methods
/
LK_hack.cc
ResidueConnection.hh
methods
/
LK_PolarNonPolarEnergy.cc
AtomType.hh
methods
/
LK_PolarNonPolarEnergy.cc
ResidueConnection.hh
methods
/
LK_PolarNonPolarEnergy.cc
rna
/
util.hh
loop_graph
/
LoopGraph.cc
VariantType.hh
memb_etable
/
MembEtable.cc
AtomType.hh
memb_etable
/
MembEtable.hh
AtomTypeSet.hh
etable
/
MembEtable.hh
AtomTypeSet.hh
Membrane_FAPotential.cc
AA.hh
methods
/
MembraneEnvSmoothEnergy.cc
AA.hh
methods
/
MembraneEnvSmoothEnergy.hh
AA.hh
MembranePotential.cc
AA.hh
MembranePotential.cc
VariantType.hh
methods
/
MMBondAngleEnergy.cc
AtomType.hh
methods
/
MMBondAngleEnergy.cc
ResidueConnection.hh
methods
/
MMBondAngleEnergy.cc
ResidueType.hh
mm
/
MMBondAngleLibrary.cc
MMAtomType.hh
mm
/
MMBondAngleLibrary.cc
MMAtomTypeSet.fwd.hh
mm
/
MMBondAngleLibrary.cc
MMAtomTypeSet.hh
mm
/
MMBondAngleLibrary.hh
MMAtomTypeSet.fwd.hh
mm
/
MMBondAngleResidueTypeParam.cc
Atom.hh
mm
/
MMBondAngleResidueTypeParam.cc
MMAtomType.hh
mm
/
MMBondAngleResidueTypeParam.cc
ResidueConnection.hh
mm
/
MMBondAngleResidueTypeParam.cc
ResidueType.hh
mm
/
MMBondAngleResidueTypeParam.hh
ResidueType.fwd.hh
mm
/
MMBondAngleResidueTypeParamSet.cc
ResidueConnection.hh
mm
/
MMBondAngleResidueTypeParamSet.cc
ResidueType.hh
mm
/
MMBondAngleResidueTypeParamSet.hh
ResidueType.fwd.hh
mm
/
MMBondAngleScore.cc
MMAtomTypeSet.fwd.hh
mm
/
MMBondAngleScore.hh
MMAtomTypeSet.fwd.hh
methods
/
MMBondLengthEnergy.cc
AtomType.hh
methods
/
MMBondLengthEnergy.cc
ResidueConnection.hh
methods
/
MMBondLengthEnergy.cc
ResidueType.hh
mm
/
MMBondLengthLibrary.cc
MMAtomType.hh
mm
/
MMBondLengthLibrary.cc
MMAtomTypeSet.fwd.hh
mm
/
MMBondLengthLibrary.cc
MMAtomTypeSet.hh
mm
/
MMBondLengthLibrary.hh
MMAtomTypeSet.fwd.hh
mm
/
MMBondLengthScore.cc
MMAtomTypeSet.fwd.hh
mm
/
MMBondLengthScore.hh
MMAtomTypeSet.fwd.hh
methods
/
MMLJEnergyInter.cc
ResidueType.hh
methods
/
MMLJEnergyIntra.cc
ResidueType.hh
mm
/
MMLJEnergyTable.cc
MMAtomTypeSet.hh
mm
/
MMLJLibrary.cc
MMAtomType.hh
mm
/
MMLJLibrary.cc
MMAtomTypeSet.hh
mm
/
MMLJLibrary.hh
MMAtomTypeSet.hh
mm
/
MMLJScore.cc
MMAtomTypeSet.hh
methods
/
MMTorsionEnergy.cc
ResidueConnection.hh
methods
/
MMTorsionEnergy.cc
ResidueType.hh
mm
/
MMTorsionLibrary.cc
MMAtomType.hh
mm
/
MMTorsionLibrary.cc
MMAtomTypeSet.fwd.hh
mm
/
MMTorsionLibrary.cc
MMAtomTypeSet.hh
mm
/
MMTorsionLibrary.hh
MMAtomTypeSet.fwd.hh
mm
/
MMTorsionScore.cc
MMAtomTypeSet.fwd.hh
mm
/
MMTorsionScore.hh
MMAtomTypeSet.fwd.hh
membrane
/
MPEnvEnergy.cc
AA.hh
membrane
/
MPEnvEnergy.hh
AA.hh
membrane
/
MPNonHelixPenalty.cc
AA.hh
membrane
/
MPNonHelixPenalty.cc
VariantType.hh
membrane
/
MPPairEnergy.cc
AA.hh
membrane
/
MPPairEnergy.cc
VariantType.hh
membrane
/
MPPairEnergy.hh
AA.hh
membrane
/
MPSecStructPenalty.cc
AA.hh
membrane
/
MPTerminiPenalty.cc
AA.hh
membrane
/
MPTerminiPenalty.cc
VariantType.hh
membrane
/
MPTMProjPenalty.cc
AA.hh
membrane
/
MPTMProjPenalty.cc
VariantType.hh
constraints
/
NamedAtomPairConstraint.cc
ResidueType.hh
NeighborList.tmpl.hh
AA.hh
NeighborList.tmpl.hh
Adduct.fwd.hh
NeighborList.tmpl.hh
Adduct.hh
NeighborList.tmpl.hh
AtomICoor.fwd.hh
NeighborList.tmpl.hh
AtomICoor.hh
NeighborList.tmpl.hh
AtomType.fwd.hh
NeighborList.tmpl.hh
AtomType.hh
NeighborList.tmpl.hh
AtomTypeSet.fwd.hh
NeighborList.tmpl.hh
ElementSet.fwd.hh
NeighborList.tmpl.hh
orbitals
/
ICoorOrbitalData.hh
NeighborList.tmpl.hh
MMAtomType.fwd.hh
NeighborList.tmpl.hh
MMAtomTypeSet.fwd.hh
NeighborList.tmpl.hh
orbitals
/
OrbitalType.fwd.hh
NeighborList.tmpl.hh
orbitals
/
OrbitalTypeSet.fwd.hh
NeighborList.tmpl.hh
ResConnID.fwd.hh
NeighborList.tmpl.hh
ResConnID.hh
NeighborList.tmpl.hh
ResidueConnection.fwd.hh
NeighborList.tmpl.hh
ResidueConnection.hh
NeighborList.tmpl.hh
ResidueType.fwd.hh
NeighborList.tmpl.hh
ResidueType.hh
NeighborList.tmpl.hh
ResidueTypeSet.fwd.hh
NeighborList.tmpl.hh
types.hh
NeighborList.tmpl.hh
VariantType.fwd.hh
methods
/
NMerPSSMEnergy.cc
AA.hh
methods
/
NMerPSSMEnergy.hh
AA.hh
methods
/
NMerRefEnergy.cc
AA.hh
methods
/
NMerSVMEnergy.cc
AA.hh
methods
/
NMerSVMEnergy.hh
AA.hh
geometric_solvation
/
non_scorefxn_exact_model.cc
AtomType.hh
geometric_solvation
/
non_scorefxn_exact_model.cc
ChemicalManager.hh
nv
/
NVlookup.hh
AA.hh
nv
/
NVscore.cc
AA.hh
nv
/
NVscore.cc
AtomType.hh
geometric_solvation
/
OccludedHbondSolEnergy.cc
AtomType.hh
geometric_solvation
/
OccludedHbondSolEnergy_onebody.cc
AtomType.hh
OmegaTether.hh
AA.hh
methods
/
OmegaTetherEnergy.cc
VariantType.hh
orbitals
/
OrbitalsAssigned.cc
AtomType.hh
orbitals
/
OrbitalsLookup.cc
orbitals
/
OrbitalTypeMapper.hh
orbitals
/
OrbitalsLookup.hh
orbitals
/
OrbitalTypeMapper.fwd.hh
orbitals
/
OrbitalsScore.cc
AtomType.hh
orbitals
/
OrbitalsScore.cc
orbitals
/
OrbitalType.hh
orbitals
/
OrbitalsScore.cc
orbitals
/
OrbitalTypeMapper.fwd.hh
orbitals
/
OrbitalsScore.cc
ResidueTypeSet.hh
orbitals
/
OrbitalsScore.hh
orbitals
/
OrbitalTypeMapper.fwd.hh
orbitals
/
OrbitalsStatistics.cc
orbitals
/
OrbitalType.hh
P_AA.hh
AA.hh
methods
/
P_AA_pp_Energy.cc
VariantType.hh
methods
/
PairEnergy.cc
VariantType.hh
PairEPotential.cc
AA.hh
electron_density
/
PattersonCorrEnergy.cc
AA.hh
electron_density
/
PattersonCorrEnergy.cc
AtomType.hh
methods
/
pHEnergy.cc
VariantType.hh
cryst
/
PhenixInterface.cc
AA.hh
cryst
/
PhenixInterface.cc
AtomType.hh
cryst
/
PhenixInterface.cc
ResidueTypeSet.hh
cryst
/
PhenixInterface.cc
VariantType.hh
PoissonBoltzmannPotential.cc
AtomType.hh
PoissonBoltzmannPotential.cc
ResidueType.hh
packing
/
PoseBalls.cc
AtomType.hh
packing
/
PoseBallsLite.cc
AtomType.hh
methods
/
ProQ_Energy.cc
AtomType.hh
methods
/
ProQ_Energy.cc
ResidueType.hh
ProQPotential.cc
AA.hh
ProQPotential.cc
VariantType.hh
Rama2BOffset.hh
AA.hh
methods
/
Rama2BOffsetEnergy.cc
AA.hh
methods
/
Rama2BOffsetEnergy.cc
AtomType.hh
methods
/
Rama2BOffsetEnergy.cc
ChemicalManager.fwd.hh
methods
/
Rama2BOffsetEnergy.cc
ResidueConnection.hh
methods
/
Rama2BOffsetEnergy.cc
ResidueType.hh
methods
/
Rama2BOffsetEnergy.cc
ResidueTypeSet.hh
methods
/
Rama2BOffsetEnergy.cc
VariantType.hh
methods
/
Rama2BOffsetEnergy.hh
ResidueType.fwd.hh
Ramachandran.cc
AA.hh
Ramachandran.cc
ResidueConnection.hh
Ramachandran.hh
AA.hh
Ramachandran2B.hh
AA.hh
methods
/
RamachandranEnergy.cc
AA.hh
methods
/
RamachandranEnergy.cc
VariantType.hh
methods
/
ReferenceEnergy.cc
AA.hh
methods
/
ReferenceEnergy.cc
VariantType.hh
methods
/
ReferenceEnergy.hh
AA.hh
methods
/
ReferenceEnergyNoncanonical.cc
AA.hh
methods
/
ReferenceEnergyNoncanonical.cc
VariantType.hh
methods
/
RG_Energy_Fast.cc
VariantType.hh
rna
/
RG_Energy_RNA.cc
rna
/
util.hh
methods
/
RG_LocalEnergy.cc
VariantType.hh
rms_util.cc
AtomType.hh
rms_util.cc
automorphism.hh
rms_util.tmpl.hh
AA.hh
rms_util.tmpl.hh
Adduct.fwd.hh
rms_util.tmpl.hh
Adduct.hh
rms_util.tmpl.hh
AtomICoor.fwd.hh
rms_util.tmpl.hh
AtomICoor.hh
rms_util.tmpl.hh
AtomType.fwd.hh
rms_util.tmpl.hh
AtomType.hh
rms_util.tmpl.hh
AtomTypeSet.fwd.hh
rms_util.tmpl.hh
ElementSet.fwd.hh
rms_util.tmpl.hh
orbitals
/
ICoorOrbitalData.hh
rms_util.tmpl.hh
MMAtomType.fwd.hh
rms_util.tmpl.hh
MMAtomTypeSet.fwd.hh
rms_util.tmpl.hh
orbitals
/
OrbitalType.fwd.hh
rms_util.tmpl.hh
orbitals
/
OrbitalTypeSet.fwd.hh
rms_util.tmpl.hh
ResConnID.fwd.hh
rms_util.tmpl.hh
ResConnID.hh
rms_util.tmpl.hh
ResidueConnection.fwd.hh
rms_util.tmpl.hh
ResidueConnection.hh
rms_util.tmpl.hh
ResidueType.fwd.hh
rms_util.tmpl.hh
ResidueType.hh
rms_util.tmpl.hh
ResidueTypeSet.fwd.hh
rms_util.tmpl.hh
types.hh
rms_util.tmpl.hh
VariantType.fwd.hh
rna
/
RNA_AtomVDW.cc
AA.hh
rna
/
RNA_AtomVDW.cc
ChemicalManager.hh
rna
/
RNA_AtomVDW.cc
ResidueType.hh
rna
/
RNA_AtomVDW.cc
ResidueTypeSet.hh
rna
/
RNA_AtomVDW.hh
AA.hh
rna
/
RNA_AtomVDW.hh
ResidueTypeSet.fwd.hh
rna
/
RNA_CentroidInfo.cc
AA.hh
rna
/
RNA_CentroidInfo.cc
rna
/
util.hh
rna
/
chemical_shift
/
RNA_ChemicalShiftPotential.cc
rna
/
util.hh
rna
/
chemical_shift
/
RNA_ChemicalShiftPotential.hh
AA.hh
rna
/
chemical_shift
/
RNA_CS_Parameters.hh
AA.hh
rna
/
chemical_shift
/
RNA_CS_Util.cc
AA.hh
rna
/
chemical_shift
/
RNA_CS_Util.hh
AA.hh
rna
/
data
/
RNA_DataBackboneEnergy.cc
ChemicalManager.hh
rna
/
data
/
RNA_DataBackboneEnergy.cc
ResidueType.fwd.hh
rna
/
data
/
RNA_DataBackboneEnergy.cc
ResidueType.hh
rna
/
data
/
RNA_DataBackboneEnergy.cc
ResidueTypeSet.hh
rna
/
RNA_FilteredBaseBaseInfo.cc
AA.hh
rna
/
RNA_FilteredBaseBaseInfo.cc
rna
/
util.hh
rna
/
RNA_FullAtomStackingEnergy.cc
AtomType.hh
rna
/
RNA_FullAtomVDW_BasePhosphate.cc
rna
/
RNA_ResidueType.hh
rna
/
RNA_FullAtomVDW_BasePhosphate.cc
rna
/
util.hh
rna
/
RNA_JR_SuiteEnergy.cc
rna
/
util.hh
rna
/
RNA_LowResolutionPotential.cc
AA.hh
rna
/
RNA_LowResolutionPotential.cc
ChemicalManager.hh
rna
/
RNA_LowResolutionPotential.cc
ResidueTypeSet.hh
rna
/
RNA_LowResolutionPotential.hh
AA.hh
rna
/
RNA_LowResolutionPotential.hh
ResidueTypeSet.fwd.hh
rna
/
RNA_Mg_Energy.cc
AtomType.hh
rna
/
RNA_Mg_Energy.hh
rna
/
RNA_FittedTorsionInfo.hh
rna
/
RNA_Mg_KnowledgeBasedPotential.cc
AtomType.hh
rna
/
RNA_Mg_KnowledgeBasedPotential.cc
ResidueType.hh
rna
/
RNA_Mg_KnowledgeBasedPotential.hh
rna
/
RNA_FittedTorsionInfo.hh
rna
/
RNA_PairwiseLowResolutionEnergy.cc
rna
/
util.hh
rna
/
RNA_RawBaseBaseInfo.cc
AA.hh
rna
/
RNA_RawBaseBaseInfo.cc
rna
/
util.hh
rna
/
RNA_ScoringInfo.cc
AA.hh
rna
/
RNA_SugarCloseEnergy.cc
rna
/
RNA_FittedTorsionInfo.hh
rna
/
RNA_SugarCloseEnergy.cc
rna
/
RNA_ResidueType.hh
rna
/
RNA_SugarCloseEnergy.cc
rna
/
util.hh
rna
/
RNA_SuitePotential.cc
rna
/
util.hh
rna
/
RNA_TorsionEnergy.hh
rna
/
RNA_FittedTorsionInfo.hh
rna
/
RNA_TorsionPotential.cc
AA.hh
rna
/
RNA_TorsionPotential.cc
AtomType.hh
rna
/
RNA_TorsionPotential.cc
rna
/
RNA_FittedTorsionInfo.hh
rna
/
RNA_TorsionPotential.cc
rna
/
RNA_ResidueType.hh
rna
/
RNA_TorsionPotential.cc
rna
/
util.hh
rna
/
RNA_TorsionPotential.cc
VariantType.hh
rna
/
RNA_TorsionPotential.hh
rna
/
RNA_FittedTorsionInfo.fwd.hh
sasa.cc
AtomType.hh
sasa.cc
AtomTypeSet.hh
saxs
/
SAXSEnergy.cc
AtomType.hh
saxs
/
SAXSEnergy.cc
ChemicalManager.hh
saxs
/
SAXSEnergy.hh
ResidueTypeSet.fwd.hh
saxs
/
SAXSEnergyCEN.hh
ChemicalManager.hh
saxs
/
SAXSEnergyFA.hh
AtomTypeSet.fwd.hh
saxs
/
SAXSEnergyFA.hh
ChemicalManager.fwd.hh
saxs
/
SAXSEnergyFA.hh
ChemicalManager.hh
saxs
/
SAXSEnergyFA.hh
ElementSet.fwd.hh
saxs
/
SAXSEnergyFA.hh
MMAtomTypeSet.fwd.hh
saxs
/
SAXSEnergyFA.hh
orbitals
/
OrbitalTypeSet.fwd.hh
saxs
/
SAXSEnergyFA.hh
ResidueTypeSet.fwd.hh
ScoreFunctionFactory.cc
AA.hh
ScoringManager.cc
ChemicalManager.hh
SecondaryStructurePotential.cc
AA.hh
SecondaryStructurePotential.cc
VariantType.hh
methods
/
SequenceDependentRefEnergy.cc
AA.hh
dna
/
setup.cc
AA.hh
dna
/
setup.cc
ResidueType.hh
constraints
/
SiteConstraint.cc
ResidueType.hh
constraints
/
SiteConstraintResidues.cc
ResidueType.hh
methods
/
SmoothCenPairEnergy.cc
VariantType.hh
methods
/
SmoothEnvEnergy.cc
VariantType.hh
SmoothEnvPairPotential.cc
AA.hh
SmoothEnvPairPotential.cc
VariantType.hh
SS_Info.hh
ResidueType.fwd.hh
rna
/
StackElecEnergy.cc
AtomType.hh
packing
/
surf_vol.cc
ResidueType.hh
packing
/
SurfEnergy.cc
AtomType.hh
packing
/
SurfVolEnergy.cc
AtomType.hh
sym_e
/
symE.cc
AtomType.hh
hbonds
/
types.cc
types.hh
hbonds
/
types.hh
types.hh
sasa
/
util.cc
AtomType.hh
sasa
/
util.cc
AtomTypeSet.hh
dssp
/
util.cc
ResidueType.hh
vdwaals
/
VDW_Energy.cc
AtomType.hh
vdwaals
/
VDW_Energy.cc
AtomTypeSet.hh
vdwaals
/
VDW_Energy.cc
ChemicalManager.hh
WaterAdductHBondPotential.cc
AtomType.hh
methods
/
WaterAdductIntraEnergy.cc
AtomType.hh
cryst
/
XtalMLEnergy.cc
AA.hh
cryst
/
XtalMLEnergy.cc
AtomType.hh
cryst
/
XtalMLEnergy.cc
ChemicalManager.hh
cryst
/
XtalMLEnergy.hh
AA.hh
cryst
/
XtalMLEnergy.hh
ChemicalManager.hh
methods
/
YHHPlanarityEnergy.cc
VariantType.hh
Generated on Wed Sep 10 2014 11:28:19 for Rosetta Core by
1.8.7