Rosetta Core  2014.35

scoring → chemical Relation

File in src/core/scoringIncludes file in src/core/chemical
constraints / AmbiguousNMRDistanceConstraint.ccAA.hh
constraints / AmbiguousNMRDistanceConstraint.ccResidueType.hh
constraints / AmbiguousNMRDistanceConstraint.hhAA.hh
constraints / AngleConstraint.ccResidueType.hh
APBSWrapper.ccAtomType.hh
APBSWrapper.ccResidueType.hh
etable / atom_pair_energy_inline.hhAtomType.hh
constraints / AtomPairConstraint.ccResidueType.hh
AtomVDW.ccAtomType.hh
AtomVDW.ccAtomTypeSet.hh
AtomVDW.ccChemicalManager.hh
AtomVDW.hhAtomTypeSet.fwd.hh
constraints / BackboneStubConstraint.ccChemicalManager.hh
constraints / BackboneStubConstraint.ccResidueType.hh
constraints / BackboneStubConstraint.ccResidueTypeSet.hh
constraints / BackboneStubLinearConstraint.ccChemicalManager.hh
constraints / BackboneStubLinearConstraint.ccResidueType.hh
constraints / BackboneStubLinearConstraint.ccResidueTypeSet.hh
dna / base_geometry.ccAA.hh
dna / base_geometry.ccResidueType.hh
dna / base_geometry.hhResidueType.fwd.hh
etable / BaseEtableEnergy.tmpl.hhAA.hh
etable / BaseEtableEnergy.tmpl.hhAdduct.fwd.hh
etable / BaseEtableEnergy.tmpl.hhAdduct.hh
etable / BaseEtableEnergy.tmpl.hhAtomICoor.fwd.hh
etable / BaseEtableEnergy.tmpl.hhAtomICoor.hh
etable / BaseEtableEnergy.tmpl.hhAtomType.fwd.hh
etable / BaseEtableEnergy.tmpl.hhAtomType.hh
etable / BaseEtableEnergy.tmpl.hhAtomTypeSet.fwd.hh
etable / BaseEtableEnergy.tmpl.hhAtomTypeSet.hh
etable / BaseEtableEnergy.tmpl.hhChemicalManager.fwd.hh
etable / BaseEtableEnergy.tmpl.hhChemicalManager.hh
etable / BaseEtableEnergy.tmpl.hhElementSet.fwd.hh
etable / BaseEtableEnergy.tmpl.hhorbitals / ICoorOrbitalData.hh
etable / BaseEtableEnergy.tmpl.hhMMAtomType.fwd.hh
etable / BaseEtableEnergy.tmpl.hhMMAtomTypeSet.fwd.hh
etable / BaseEtableEnergy.tmpl.hhorbitals / OrbitalType.fwd.hh
etable / BaseEtableEnergy.tmpl.hhorbitals / OrbitalTypeSet.fwd.hh
etable / BaseEtableEnergy.tmpl.hhResConnID.fwd.hh
etable / BaseEtableEnergy.tmpl.hhResConnID.hh
etable / BaseEtableEnergy.tmpl.hhResidueConnection.fwd.hh
etable / BaseEtableEnergy.tmpl.hhResidueConnection.hh
etable / BaseEtableEnergy.tmpl.hhResidueType.fwd.hh
etable / BaseEtableEnergy.tmpl.hhResidueType.hh
etable / BaseEtableEnergy.tmpl.hhResidueTypeSet.fwd.hh
etable / BaseEtableEnergy.tmpl.hhtypes.hh
etable / BaseEtableEnergy.tmpl.hhVariantType.fwd.hh
constraints / BigBinConstraint.ccResidueType.hh
carbon_hbonds / CarbonHBondEnergy.ccAtomType.hh
carbon_hbonds / CarbonHBondPotential.ccAtomTypeSet.hh
carbon_hbonds / CarbonHBondPotential.ccChemicalManager.hh
methods / CartesianBondedEnergy.ccAA.hh
methods / CartesianBondedEnergy.ccAtomType.hh
methods / CartesianBondedEnergy.ccChemicalManager.fwd.hh
methods / CartesianBondedEnergy.ccPatch.hh
methods / CartesianBondedEnergy.ccResidueConnection.hh
methods / CartesianBondedEnergy.ccResidueType.hh
methods / CartesianBondedEnergy.ccResidueTypeSet.hh
methods / CartesianBondedEnergy.ccVariantType.hh
methods / CartesianBondedEnergy.hhResidueType.fwd.hh
methods / CenPairEnergy.ccVariantType.hh
methods / CenRotEnvEnergy.ccVariantType.hh
CenRotEnvPairPotential.ccAA.hh
CenRotEnvPairPotential.hhAA.hh
methods / CenRotPairEnergy.ccAA.hh
methods / CenRotPairEnergy.ccVariantType.hh
disulfides / CentroidDisulfideEnergy.ccChemicalManager.fwd.hh
disulfides / CentroidDisulfideEnergy.ccResidueTypeSet.hh
disulfides / CentroidDisulfideEnergy.ccVariantType.hh
disulfides / CentroidDisulfideEnergyContainer.ccResidueConnection.hh
disulfides / CentroidDisulfideEnergyContainer.ccResidueType.hh
disulfides / CentroidDisulfideEnergyContainer.ccResidueTypeSet.hh
disulfides / CentroidDisulfideEnergyContainer.ccVariantType.hh
disulfides / CentroidDisulfideEnergyContainer.hhResidueType.fwd.hh
disulfides / CentroidDisulfidePotential.ccChemicalManager.hh
disulfides / CentroidDisulfidePotential.ccResidueTypeSet.hh
methods / chainbreak_util.ccVariantType.hh
methods / ChainbreakEnergy.ccVariantType.hh
etable / CoarseEtableEnergy.ccChemicalManager.fwd.hh
constraints / ConstraintIO.ccResidueType.hh
geometric_solvation / ContextIndependentGeometricSolEnergy.ccrna / util.hh
etable / count_pair / CountPairFactory.ccResidueConnection.hh
etable / count_pair / CountPairGeneric.ccAtomType.hh
etable / count_pair / CountPairGeneric.ccResidueConnection.hh
etable / count_pair / CountPairGeneric.hhResidueType.fwd.hh
methods / CSD_TorsionEnergy.ccResidueType.hh
methods / D2H_SA_Energy.ccAtomType.hh
methods / D2H_SA_Energy.ccResidueType.hh
geometric_solvation / DatabaseOccSolEne.ccAtomTypeSet.hh
geometric_solvation / DatabaseOccSolEne.ccChemicalManager.hh
geometric_solvation / DatabaseOccSolEne.hhAtomTypeSet.fwd.hh
interface_ / DDPlookup.hhAA.hh
methods / dfire / DFIRE_Energy.ccResidueType.hh
methods / dfire / DFIRE_Potential.ccResidueType.hh
dna / DirectReadoutPotential.ccAA.hh
methods / DistanceChainbreakEnergy.ccVariantType.hh
disulfides / DisulfideMatchingEnergy.ccVariantType.hh
disulfides / DisulfideMatchingEnergyContainer.ccResidueConnection.hh
disulfides / DisulfideMatchingEnergyContainer.ccResidueType.hh
disulfides / DisulfideMatchingEnergyContainer.ccResidueTypeSet.hh
disulfides / DisulfideMatchingEnergyContainer.ccVariantType.hh
disulfides / DisulfideMatchingEnergyContainer.hhResidueType.fwd.hh
dna / DNA_BasePotential.ccAA.hh
dna / DNA_BasePotential.ccResidueType.hh
dna / DNABFormPotential.ccAA.hh
dna / DNATorsionPotential.ccAA.hh
electron_density / ElecDensAllAtomCenEnergy.ccAA.hh
electron_density / ElecDensAllAtomCenEnergy.ccAtomType.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.ccAA.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.ccAtomType.hh
electron_density / ElecDensCenEnergy.ccAA.hh
electron_density / ElecDensEnergy.ccAA.hh
electron_density / ElecDensEnergy.ccAtomType.hh
electron_density / ElectronDensity.ccAtomType.hh
electron_density / ElectronDensity.ccAtomTypeSet.hh
electron_density_atomwise / ElectronDensityAtomwise.ccAtomType.hh
electron_density_atomwise / ElectronDensityAtomwise.ccAtomTypeSet.hh
methods / EnergyMethodOptions.ccChemicalManager.fwd.hh
methods / EnvEnergy.ccVariantType.hh
EnvPairPotential.ccAA.hh
EnvPairPotential.ccVariantType.hh
methods / EnvSmoothEnergy.ccAA.hh
methods / EnvSmoothEnergy.ccVariantType.hh
methods / EnvSmoothEnergy.hhAA.hh
etable / Etable.ccAtomType.hh
etable / Etable.hhAtomTypeSet.hh
etable / EtableEnergy.ccVariantType.hh
geometric_solvation / ExactOccludedHbondSolEnergy.ccAtomType.hh
geometric_solvation / ExactOccludedHbondSolEnergy.ccAtomTypeSet.hh
geometric_solvation / ExactOccludedHbondSolEnergy.ccChemicalManager.hh
geometric_solvation / ExactOccludedHbondSolEnergy.ccResConnID.hh
geometric_solvation / ExactOccludedHbondSolEnergy.ccResidueType.hh
geometric_solvation / ExactOccludedHbondSolEnergy.hhAtomTypeSet.fwd.hh
elec / FA_ElecEnergy.hhAtomType.hh
elec / FA_ElecEnergyAroAll.ccAtomType.hh
elec / FA_ElecEnergyAroAro.ccAtomType.hh
constraints / FabConstraint.ccResidueType.hh
facts / FACTSEnergy.ccAtomType.hh
facts / FACTSPose.ccResidueTypeSet.hh
facts / FACTSPotential.ccAA.hh
facts / FACTSPotential.ccAtomType.hh
facts / FACTSPotential.ccAtomTypeSet.hh
facts / FACTSPotential.ccResidueTypeSet.hh
facts / FACTSPotential.ccVariantType.hh
facts / FACTSPotential.fwd.hhResidueType.hh
facts / FACTSResidue.ccAA.hh
facts / FACTSResidue.ccAtomType.hh
facts / FACTSResidue.ccAtomTypeSet.fwd.hh
facts / FACTSResidue.ccAtomTypeSet.hh
facts / FACTSResidue.ccChemicalManager.hh
facts / FACTSResidue.ccElementSet.fwd.hh
facts / FACTSResidue.ccorbitals / OrbitalTypeSet.fwd.hh
facts / FACTSResidue.ccresidue_io.hh
facts / FACTSResidue.ccResidueTypeSet.fwd.hh
facts / FACTSResidue.ccVariantType.hh
membrane / FaMPEnvSmoothEnergy.ccAA.hh
membrane / FaMPEnvSmoothEnergy.hhAA.hh
electron_density / FastDensEnergy.ccAA.hh
electron_density / FastDensEnergy.ccAtomType.hh
saxs / FastSAXSEnergy.ccAA.hh
saxs / FastSAXSEnergy.ccAtomType.hh
saxs / FastSAXSEnergy.hhAA.hh
func / FourPointsFunc.ccResidueType.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.ccChemicalManager.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.ccResidueTypeSet.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.hhResidueType.fwd.hh
disulfides / FullatomDisulfideEnergy.ccVariantType.hh
disulfides / FullatomDisulfideEnergyContainer.ccResidueConnection.hh
disulfides / FullatomDisulfideEnergyContainer.ccResidueType.hh
disulfides / FullatomDisulfideEnergyContainer.ccVariantType.hh
disulfides / FullatomDisulfideEnergyContainer.hhResidueType.fwd.hh
methods / GaussianOverlapEnergy.ccAA.hh
methods / GaussianOverlapEnergy.ccAtomType.hh
methods / GaussianOverlapEnergy.ccVariantType.hh
GenBornPotential.ccAtomType.hh
GenBornPotential.ccAtomTypeSet.hh
GenBornPotential.ccResidueTypeSet.hh
GenBornPotential.ccVariantType.hh
geometric_solvation / GeometricSolEnergyEvaluator.ccAtomType.hh
geometric_solvation / GeometricSolEnergyEvaluator.cctypes.hh
geometric_solvation / GeometricSolEnergyEvaluator.ccrna / util.hh
methods / GoapEnergy.ccResidueTypeSet.hh
methods / GoapEnergy.fwd.hhResidueType.hh
hbonds / HBondEnergy.ccAtomType.hh
hbonds / HBondEnergy.ccAtomTypeSet.hh
hbonds / HBondEnergy.ccrna / RNA_ResidueType.hh
hbonds / hbonds.ccAtomType.hh
hbonds / hbonds.ccrna / RNA_ResidueType.hh
hbonds / hbonds_geom.ccAtomType.hh
hbonds / hbonds_geom.ccAtomTypeSet.hh
hbonds / hbonds_geom.ccResidueType.hh
hbonds / hbonds_geom.ccrna / RNA_ResidueType.hh
hbonds / hbonds_geom.hhtypes.hh
hbonds / HBondTypeManager.cctypes.hh
hbonds / HBondTypeManager.hhtypes.hh
methods / HybridVDW_Energy.ccChemicalManager.fwd.hh
methods / HybridVDW_Energy.ccResidueTypeSet.hh
packstat / LeeRichards.ccAtomType.hh
sasa / LeGrandSasa.ccAtomType.hh
sasa / LeGrandSasa.ccAtomTypeSet.hh
methods / LinearChainbreakEnergy.ccVariantType.hh
methods / LK_BallEnergy.ccAtomType.hh
methods / LK_BallInfo.ccAtomType.hh
methods / LK_BallInfo.ccAtomTypeSet.hh
methods / LK_BallInfo.cctypes.hh
methods / LK_hack.ccAtomType.hh
methods / LK_hack.ccResidueConnection.hh
methods / LK_PolarNonPolarEnergy.ccAtomType.hh
methods / LK_PolarNonPolarEnergy.ccResidueConnection.hh
methods / LK_PolarNonPolarEnergy.ccrna / util.hh
loop_graph / LoopGraph.ccVariantType.hh
memb_etable / MembEtable.ccAtomType.hh
memb_etable / MembEtable.hhAtomTypeSet.hh
etable / MembEtable.hhAtomTypeSet.hh
Membrane_FAPotential.ccAA.hh
methods / MembraneEnvSmoothEnergy.ccAA.hh
methods / MembraneEnvSmoothEnergy.hhAA.hh
MembranePotential.ccAA.hh
MembranePotential.ccVariantType.hh
methods / MMBondAngleEnergy.ccAtomType.hh
methods / MMBondAngleEnergy.ccResidueConnection.hh
methods / MMBondAngleEnergy.ccResidueType.hh
mm / MMBondAngleLibrary.ccMMAtomType.hh
mm / MMBondAngleLibrary.ccMMAtomTypeSet.fwd.hh
mm / MMBondAngleLibrary.ccMMAtomTypeSet.hh
mm / MMBondAngleLibrary.hhMMAtomTypeSet.fwd.hh
mm / MMBondAngleResidueTypeParam.ccAtom.hh
mm / MMBondAngleResidueTypeParam.ccMMAtomType.hh
mm / MMBondAngleResidueTypeParam.ccResidueConnection.hh
mm / MMBondAngleResidueTypeParam.ccResidueType.hh
mm / MMBondAngleResidueTypeParam.hhResidueType.fwd.hh
mm / MMBondAngleResidueTypeParamSet.ccResidueConnection.hh
mm / MMBondAngleResidueTypeParamSet.ccResidueType.hh
mm / MMBondAngleResidueTypeParamSet.hhResidueType.fwd.hh
mm / MMBondAngleScore.ccMMAtomTypeSet.fwd.hh
mm / MMBondAngleScore.hhMMAtomTypeSet.fwd.hh
methods / MMBondLengthEnergy.ccAtomType.hh
methods / MMBondLengthEnergy.ccResidueConnection.hh
methods / MMBondLengthEnergy.ccResidueType.hh
mm / MMBondLengthLibrary.ccMMAtomType.hh
mm / MMBondLengthLibrary.ccMMAtomTypeSet.fwd.hh
mm / MMBondLengthLibrary.ccMMAtomTypeSet.hh
mm / MMBondLengthLibrary.hhMMAtomTypeSet.fwd.hh
mm / MMBondLengthScore.ccMMAtomTypeSet.fwd.hh
mm / MMBondLengthScore.hhMMAtomTypeSet.fwd.hh
methods / MMLJEnergyInter.ccResidueType.hh
methods / MMLJEnergyIntra.ccResidueType.hh
mm / MMLJEnergyTable.ccMMAtomTypeSet.hh
mm / MMLJLibrary.ccMMAtomType.hh
mm / MMLJLibrary.ccMMAtomTypeSet.hh
mm / MMLJLibrary.hhMMAtomTypeSet.hh
mm / MMLJScore.ccMMAtomTypeSet.hh
methods / MMTorsionEnergy.ccResidueConnection.hh
methods / MMTorsionEnergy.ccResidueType.hh
mm / MMTorsionLibrary.ccMMAtomType.hh
mm / MMTorsionLibrary.ccMMAtomTypeSet.fwd.hh
mm / MMTorsionLibrary.ccMMAtomTypeSet.hh
mm / MMTorsionLibrary.hhMMAtomTypeSet.fwd.hh
mm / MMTorsionScore.ccMMAtomTypeSet.fwd.hh
mm / MMTorsionScore.hhMMAtomTypeSet.fwd.hh
membrane / MPEnvEnergy.ccAA.hh
membrane / MPEnvEnergy.hhAA.hh
membrane / MPNonHelixPenalty.ccAA.hh
membrane / MPNonHelixPenalty.ccVariantType.hh
membrane / MPPairEnergy.ccAA.hh
membrane / MPPairEnergy.ccVariantType.hh
membrane / MPPairEnergy.hhAA.hh
membrane / MPSecStructPenalty.ccAA.hh
membrane / MPTerminiPenalty.ccAA.hh
membrane / MPTerminiPenalty.ccVariantType.hh
membrane / MPTMProjPenalty.ccAA.hh
membrane / MPTMProjPenalty.ccVariantType.hh
constraints / NamedAtomPairConstraint.ccResidueType.hh
NeighborList.tmpl.hhAA.hh
NeighborList.tmpl.hhAdduct.fwd.hh
NeighborList.tmpl.hhAdduct.hh
NeighborList.tmpl.hhAtomICoor.fwd.hh
NeighborList.tmpl.hhAtomICoor.hh
NeighborList.tmpl.hhAtomType.fwd.hh
NeighborList.tmpl.hhAtomType.hh
NeighborList.tmpl.hhAtomTypeSet.fwd.hh
NeighborList.tmpl.hhElementSet.fwd.hh
NeighborList.tmpl.hhorbitals / ICoorOrbitalData.hh
NeighborList.tmpl.hhMMAtomType.fwd.hh
NeighborList.tmpl.hhMMAtomTypeSet.fwd.hh
NeighborList.tmpl.hhorbitals / OrbitalType.fwd.hh
NeighborList.tmpl.hhorbitals / OrbitalTypeSet.fwd.hh
NeighborList.tmpl.hhResConnID.fwd.hh
NeighborList.tmpl.hhResConnID.hh
NeighborList.tmpl.hhResidueConnection.fwd.hh
NeighborList.tmpl.hhResidueConnection.hh
NeighborList.tmpl.hhResidueType.fwd.hh
NeighborList.tmpl.hhResidueType.hh
NeighborList.tmpl.hhResidueTypeSet.fwd.hh
NeighborList.tmpl.hhtypes.hh
NeighborList.tmpl.hhVariantType.fwd.hh
methods / NMerPSSMEnergy.ccAA.hh
methods / NMerPSSMEnergy.hhAA.hh
methods / NMerRefEnergy.ccAA.hh
methods / NMerSVMEnergy.ccAA.hh
methods / NMerSVMEnergy.hhAA.hh
geometric_solvation / non_scorefxn_exact_model.ccAtomType.hh
geometric_solvation / non_scorefxn_exact_model.ccChemicalManager.hh
nv / NVlookup.hhAA.hh
nv / NVscore.ccAA.hh
nv / NVscore.ccAtomType.hh
geometric_solvation / OccludedHbondSolEnergy.ccAtomType.hh
geometric_solvation / OccludedHbondSolEnergy_onebody.ccAtomType.hh
OmegaTether.hhAA.hh
methods / OmegaTetherEnergy.ccVariantType.hh
orbitals / OrbitalsAssigned.ccAtomType.hh
orbitals / OrbitalsLookup.ccorbitals / OrbitalTypeMapper.hh
orbitals / OrbitalsLookup.hhorbitals / OrbitalTypeMapper.fwd.hh
orbitals / OrbitalsScore.ccAtomType.hh
orbitals / OrbitalsScore.ccorbitals / OrbitalType.hh
orbitals / OrbitalsScore.ccorbitals / OrbitalTypeMapper.fwd.hh
orbitals / OrbitalsScore.ccResidueTypeSet.hh
orbitals / OrbitalsScore.hhorbitals / OrbitalTypeMapper.fwd.hh
orbitals / OrbitalsStatistics.ccorbitals / OrbitalType.hh
P_AA.hhAA.hh
methods / P_AA_pp_Energy.ccVariantType.hh
methods / PairEnergy.ccVariantType.hh
PairEPotential.ccAA.hh
electron_density / PattersonCorrEnergy.ccAA.hh
electron_density / PattersonCorrEnergy.ccAtomType.hh
methods / pHEnergy.ccVariantType.hh
cryst / PhenixInterface.ccAA.hh
cryst / PhenixInterface.ccAtomType.hh
cryst / PhenixInterface.ccResidueTypeSet.hh
cryst / PhenixInterface.ccVariantType.hh
PoissonBoltzmannPotential.ccAtomType.hh
PoissonBoltzmannPotential.ccResidueType.hh
packing / PoseBalls.ccAtomType.hh
packing / PoseBallsLite.ccAtomType.hh
methods / ProQ_Energy.ccAtomType.hh
methods / ProQ_Energy.ccResidueType.hh
ProQPotential.ccAA.hh
ProQPotential.ccVariantType.hh
Rama2BOffset.hhAA.hh
methods / Rama2BOffsetEnergy.ccAA.hh
methods / Rama2BOffsetEnergy.ccAtomType.hh
methods / Rama2BOffsetEnergy.ccChemicalManager.fwd.hh
methods / Rama2BOffsetEnergy.ccResidueConnection.hh
methods / Rama2BOffsetEnergy.ccResidueType.hh
methods / Rama2BOffsetEnergy.ccResidueTypeSet.hh
methods / Rama2BOffsetEnergy.ccVariantType.hh
methods / Rama2BOffsetEnergy.hhResidueType.fwd.hh
Ramachandran.ccAA.hh
Ramachandran.ccResidueConnection.hh
Ramachandran.hhAA.hh
Ramachandran2B.hhAA.hh
methods / RamachandranEnergy.ccAA.hh
methods / RamachandranEnergy.ccVariantType.hh
methods / ReferenceEnergy.ccAA.hh
methods / ReferenceEnergy.ccVariantType.hh
methods / ReferenceEnergy.hhAA.hh
methods / ReferenceEnergyNoncanonical.ccAA.hh
methods / ReferenceEnergyNoncanonical.ccVariantType.hh
methods / RG_Energy_Fast.ccVariantType.hh
rna / RG_Energy_RNA.ccrna / util.hh
methods / RG_LocalEnergy.ccVariantType.hh
rms_util.ccAtomType.hh
rms_util.ccautomorphism.hh
rms_util.tmpl.hhAA.hh
rms_util.tmpl.hhAdduct.fwd.hh
rms_util.tmpl.hhAdduct.hh
rms_util.tmpl.hhAtomICoor.fwd.hh
rms_util.tmpl.hhAtomICoor.hh
rms_util.tmpl.hhAtomType.fwd.hh
rms_util.tmpl.hhAtomType.hh
rms_util.tmpl.hhAtomTypeSet.fwd.hh
rms_util.tmpl.hhElementSet.fwd.hh
rms_util.tmpl.hhorbitals / ICoorOrbitalData.hh
rms_util.tmpl.hhMMAtomType.fwd.hh
rms_util.tmpl.hhMMAtomTypeSet.fwd.hh
rms_util.tmpl.hhorbitals / OrbitalType.fwd.hh
rms_util.tmpl.hhorbitals / OrbitalTypeSet.fwd.hh
rms_util.tmpl.hhResConnID.fwd.hh
rms_util.tmpl.hhResConnID.hh
rms_util.tmpl.hhResidueConnection.fwd.hh
rms_util.tmpl.hhResidueConnection.hh
rms_util.tmpl.hhResidueType.fwd.hh
rms_util.tmpl.hhResidueType.hh
rms_util.tmpl.hhResidueTypeSet.fwd.hh
rms_util.tmpl.hhtypes.hh
rms_util.tmpl.hhVariantType.fwd.hh
rna / RNA_AtomVDW.ccAA.hh
rna / RNA_AtomVDW.ccChemicalManager.hh
rna / RNA_AtomVDW.ccResidueType.hh
rna / RNA_AtomVDW.ccResidueTypeSet.hh
rna / RNA_AtomVDW.hhAA.hh
rna / RNA_AtomVDW.hhResidueTypeSet.fwd.hh
rna / RNA_CentroidInfo.ccAA.hh
rna / RNA_CentroidInfo.ccrna / util.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.ccrna / util.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.hhAA.hh
rna / chemical_shift / RNA_CS_Parameters.hhAA.hh
rna / chemical_shift / RNA_CS_Util.ccAA.hh
rna / chemical_shift / RNA_CS_Util.hhAA.hh
rna / data / RNA_DataBackboneEnergy.ccChemicalManager.hh
rna / data / RNA_DataBackboneEnergy.ccResidueType.fwd.hh
rna / data / RNA_DataBackboneEnergy.ccResidueType.hh
rna / data / RNA_DataBackboneEnergy.ccResidueTypeSet.hh
rna / RNA_FilteredBaseBaseInfo.ccAA.hh
rna / RNA_FilteredBaseBaseInfo.ccrna / util.hh
rna / RNA_FullAtomStackingEnergy.ccAtomType.hh
rna / RNA_FullAtomVDW_BasePhosphate.ccrna / RNA_ResidueType.hh
rna / RNA_FullAtomVDW_BasePhosphate.ccrna / util.hh
rna / RNA_JR_SuiteEnergy.ccrna / util.hh
rna / RNA_LowResolutionPotential.ccAA.hh
rna / RNA_LowResolutionPotential.ccChemicalManager.hh
rna / RNA_LowResolutionPotential.ccResidueTypeSet.hh
rna / RNA_LowResolutionPotential.hhAA.hh
rna / RNA_LowResolutionPotential.hhResidueTypeSet.fwd.hh
rna / RNA_Mg_Energy.ccAtomType.hh
rna / RNA_Mg_Energy.hhrna / RNA_FittedTorsionInfo.hh
rna / RNA_Mg_KnowledgeBasedPotential.ccAtomType.hh
rna / RNA_Mg_KnowledgeBasedPotential.ccResidueType.hh
rna / RNA_Mg_KnowledgeBasedPotential.hhrna / RNA_FittedTorsionInfo.hh
rna / RNA_PairwiseLowResolutionEnergy.ccrna / util.hh
rna / RNA_RawBaseBaseInfo.ccAA.hh
rna / RNA_RawBaseBaseInfo.ccrna / util.hh
rna / RNA_ScoringInfo.ccAA.hh
rna / RNA_SugarCloseEnergy.ccrna / RNA_FittedTorsionInfo.hh
rna / RNA_SugarCloseEnergy.ccrna / RNA_ResidueType.hh
rna / RNA_SugarCloseEnergy.ccrna / util.hh
rna / RNA_SuitePotential.ccrna / util.hh
rna / RNA_TorsionEnergy.hhrna / RNA_FittedTorsionInfo.hh
rna / RNA_TorsionPotential.ccAA.hh
rna / RNA_TorsionPotential.ccAtomType.hh
rna / RNA_TorsionPotential.ccrna / RNA_FittedTorsionInfo.hh
rna / RNA_TorsionPotential.ccrna / RNA_ResidueType.hh
rna / RNA_TorsionPotential.ccrna / util.hh
rna / RNA_TorsionPotential.ccVariantType.hh
rna / RNA_TorsionPotential.hhrna / RNA_FittedTorsionInfo.fwd.hh
sasa.ccAtomType.hh
sasa.ccAtomTypeSet.hh
saxs / SAXSEnergy.ccAtomType.hh
saxs / SAXSEnergy.ccChemicalManager.hh
saxs / SAXSEnergy.hhResidueTypeSet.fwd.hh
saxs / SAXSEnergyCEN.hhChemicalManager.hh
saxs / SAXSEnergyFA.hhAtomTypeSet.fwd.hh
saxs / SAXSEnergyFA.hhChemicalManager.fwd.hh
saxs / SAXSEnergyFA.hhChemicalManager.hh
saxs / SAXSEnergyFA.hhElementSet.fwd.hh
saxs / SAXSEnergyFA.hhMMAtomTypeSet.fwd.hh
saxs / SAXSEnergyFA.hhorbitals / OrbitalTypeSet.fwd.hh
saxs / SAXSEnergyFA.hhResidueTypeSet.fwd.hh
ScoreFunctionFactory.ccAA.hh
ScoringManager.ccChemicalManager.hh
SecondaryStructurePotential.ccAA.hh
SecondaryStructurePotential.ccVariantType.hh
methods / SequenceDependentRefEnergy.ccAA.hh
dna / setup.ccAA.hh
dna / setup.ccResidueType.hh
constraints / SiteConstraint.ccResidueType.hh
constraints / SiteConstraintResidues.ccResidueType.hh
methods / SmoothCenPairEnergy.ccVariantType.hh
methods / SmoothEnvEnergy.ccVariantType.hh
SmoothEnvPairPotential.ccAA.hh
SmoothEnvPairPotential.ccVariantType.hh
SS_Info.hhResidueType.fwd.hh
rna / StackElecEnergy.ccAtomType.hh
packing / surf_vol.ccResidueType.hh
packing / SurfEnergy.ccAtomType.hh
packing / SurfVolEnergy.ccAtomType.hh
sym_e / symE.ccAtomType.hh
hbonds / types.cctypes.hh
hbonds / types.hhtypes.hh
sasa / util.ccAtomType.hh
sasa / util.ccAtomTypeSet.hh
dssp / util.ccResidueType.hh
vdwaals / VDW_Energy.ccAtomType.hh
vdwaals / VDW_Energy.ccAtomTypeSet.hh
vdwaals / VDW_Energy.ccChemicalManager.hh
WaterAdductHBondPotential.ccAtomType.hh
methods / WaterAdductIntraEnergy.ccAtomType.hh
cryst / XtalMLEnergy.ccAA.hh
cryst / XtalMLEnergy.ccAtomType.hh
cryst / XtalMLEnergy.ccChemicalManager.hh
cryst / XtalMLEnergy.hhAA.hh
cryst / XtalMLEnergy.hhChemicalManager.hh
methods / YHHPlanarityEnergy.ccVariantType.hh