scoring → conformation Relation

File in src/core/scoring	Includes file in src/core/conformation
constraints / AmbiguousConstraint.hh	Conformation.fwd.hh
constraints / AmbiguousNMRConstraint.hh	Conformation.fwd.hh
constraints / AmbiguousNMRDistanceConstraint.hh	Conformation.fwd.hh
constraints / AngleConstraint.cc	Conformation.hh
APBSWrapper.cc	Residue.hh
APBSWrapper.hh	Residue.fwd.hh
etable / atom_pair_energy_inline.hh	Atom.hh
etable / atom_pair_energy_inline.hh	Residue.hh
constraints / AtomPairConstraint.cc	Conformation.hh
constraints / BackboneStubConstraint.cc	Residue.hh
constraints / BackboneStubConstraint.cc	ResidueFactory.hh
constraints / BackboneStubConstraint.hh	Residue.fwd.hh
constraints / BackboneStubLinearConstraint.cc	Residue.hh
constraints / BackboneStubLinearConstraint.cc	ResidueFactory.hh
constraints / BackboneStubLinearConstraint.hh	Residue.fwd.hh
dna / base_geometry.cc	Residue.hh
dna / base_geometry.hh	Residue.fwd.hh
etable / BaseEtableEnergy.hh	Atom.hh
etable / BaseEtableEnergy.tmpl.hh	AbstractRotamerTrie.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	AbstractRotamerTrie.hh
etable / BaseEtableEnergy.tmpl.hh	Atom.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Atom.hh
etable / BaseEtableEnergy.tmpl.hh	Conformation.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Conformation.hh
etable / BaseEtableEnergy.tmpl.hh	signals / ConnectionEvent.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	signals / ConnectionEvent.hh
etable / BaseEtableEnergy.tmpl.hh	find_neighbors.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	find_neighbors.hh
etable / BaseEtableEnergy.tmpl.hh	signals / GeneralEvent.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	signals / GeneralEvent.hh
etable / BaseEtableEnergy.tmpl.hh	signals / IdentityEvent.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	signals / IdentityEvent.hh
etable / BaseEtableEnergy.tmpl.hh	signals / LengthEvent.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	signals / LengthEvent.hh
etable / BaseEtableEnergy.tmpl.hh	orbitals / OrbitalXYZCoords.hh
etable / BaseEtableEnergy.tmpl.hh	PointGraph.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	PointGraph.hh
etable / BaseEtableEnergy.tmpl.hh	PointGraphData.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	PointGraphData.hh
etable / BaseEtableEnergy.tmpl.hh	PseudoBond.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Residue.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	Residue.hh
etable / BaseEtableEnergy.tmpl.hh	RotamerSetBase.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	RotamerSetBase.hh
etable / BaseEtableEnergy.tmpl.hh	signals / XYZEvent.fwd.hh
etable / BaseEtableEnergy.tmpl.hh	signals / XYZEvent.hh
memb_etable / BaseMembEtableEnergy.hh	Atom.hh
etable / BaseMembEtableEnergy.hh	Atom.hh
constraints / BigBinConstraint.hh	Conformation.fwd.hh
methods / BurialEnergy.cc	Atom.hh
methods / BurialEnergy.cc	Residue.hh
carbon_hbonds / CarbonHBondEnergy.cc	Residue.hh
methods / CartesianBondedEnergy.cc	Conformation.hh
methods / CartesianBondedEnergy.cc	Residue.hh
methods / CartesianBondedEnergy.cc	ResidueFactory.hh
methods / CartesianBondedEnergy.cc	symmetry / SymmetryInfo.hh
methods / CenHBEnergy.cc	Residue.hh
methods / CenPairEnergy.cc	Conformation.hh
methods / CenPairEnergy.cc	Residue.hh
methods / CenRotEnvEnergy.cc	Residue.hh
CenRotEnvPairPotential.cc	Residue.hh
CenRotEnvPairPotential.hh	Residue.fwd.hh
methods / CenRotPairEnergy.cc	Residue.hh
disulfides / CentroidDisulfideEnergy.cc	Residue.hh
disulfides / CentroidDisulfideEnergyContainer.cc	Residue.hh
disulfides / CentroidDisulfidePotential.cc	Conformation.hh
disulfides / CentroidDisulfidePotential.cc	Residue.hh
disulfides / CentroidDisulfidePotential.hh	Residue.fwd.hh
methods / chainbreak_util.cc	Residue.hh
methods / ChainbreakEnergy.cc	Residue.hh
methods / ChainbreakEnergy.cc	symmetry / SymmetricConformation.hh
methods / ChainbreakEnergy.cc	symmetry / SymmetryInfo.hh
ChemicalShiftAnisotropy.cc	Residue.hh
methods / ChemicalShiftAnisotropyEnergy.cc	Residue.hh
etable / CoarseEtableEnergy.cc	Atom.hh
etable / CoarseEtableEnergy.hh	Atom.hh
packing / compute_holes_score_res.cc	Residue.hh
constraints / ConstantConstraint.hh	Conformation.fwd.hh
constraints / Constraint.hh	Conformation.fwd.hh
constraints / Constraints.hh	Conformation.fwd.hh
constraints / Constraints.hh	Residue.fwd.hh
constraints / ConstraintsEnergy.cc	Residue.hh
constraints / ConstraintsEnergy.hh	Residue.fwd.hh
constraints / ConstraintSet.cc	Conformation.hh
constraints / ConstraintSet.cc	signals / ConnectionEvent.hh
constraints / ConstraintSet.cc	signals / LengthEvent.hh
constraints / ConstraintSet.hh	Conformation.fwd.hh
constraints / ConstraintSet.hh	signals / ConnectionEvent.fwd.hh
constraints / ConstraintSet.hh	signals / LengthEvent.fwd.hh
constraints / ConstraintSet.hh	Residue.fwd.hh
methods / ContactOrderEnergy.cc	Residue.hh
methods / ContextDependentOneBodyEnergy.hh	Residue.fwd.hh
methods / ContextDependentTwoBodyEnergy.hh	Residue.fwd.hh
geometric_solvation / ContextIndependentGeometricSolEnergy.cc	Residue.hh
methods / ContextIndependentOneBodyEnergy.hh	Residue.fwd.hh
constraints / CoordinateConstraint.cc	Conformation.hh
constraints / CoordinateConstraint.hh	Conformation.fwd.hh
etable / count_pair / CountPair1B.hh	Atom.hh
etable / count_pair / CountPair1B.hh	Residue.hh
etable / count_pair / CountPairFactory.cc	Residue.hh
etable / count_pair / CountPairFactory.hh	Residue.fwd.hh
etable / count_pair / CountPairFunction.hh	Residue.fwd.hh
etable / count_pair / CountPairGeneric.cc	Atom.hh
etable / count_pair / CountPairGeneric.cc	PseudoBond.hh
etable / count_pair / CountPairGeneric.cc	Residue.hh
etable / count_pair / CountPairIntraRes.hh	Atom.hh
etable / count_pair / CountPairIntraRes.hh	Residue.hh
etable / count_pair / CountPairIntraResC3.hh	Atom.hh
etable / count_pair / CountPairIntraResC4.hh	Atom.hh
etable / count_pair / CountPairNone.hh	Residue.fwd.hh
trie / CPDataCorrespondence.cc	PseudoBond.hh
trie / CPDataCorrespondence.cc	Residue.hh
trie / CPDataCorrespondence.cc	RotamerSetBase.hh
trie / CPDataCorrespondence.hh	Residue.fwd.hh
trie / CPDataCorrespondence.hh	RotamerSetBase.fwd.hh
methods / CSD_TorsionEnergy.cc	Residue.hh
methods / CustomAtomPairEnergy.cc	Conformation.hh
methods / CustomAtomPairEnergy.cc	Residue.hh
methods / CustomAtomPairEnergy.cc	RotamerSetBase.hh
methods / D2H_SA_Energy.cc	symmetry / SymmetricConformation.hh
methods / D2H_SA_Energy.cc	symmetry / SymmetryInfo.hh
interface_ / DDPscore.cc	Residue.hh
methods / dfire / DFIRE_Potential.cc	Residue.hh
methods / dfire / DFIRE_Potential.hh	Residue.fwd.hh
constraints / DihedralConstraint.cc	Conformation.hh
constraints / DihedralPairConstraint.cc	Conformation.hh
DipolarCoupling.cc	Residue.hh
methods / DipolarCouplingEnergy.cc	Residue.hh
methods / DirectReadoutEnergy.cc	Residue.hh
methods / DirectReadoutEnergy.hh	Residue.fwd.hh
dna / DirectReadoutPotential.cc	Residue.hh
dna / DirectReadoutPotential.hh	Residue.fwd.hh
methods / DistanceChainbreakEnergy.cc	Residue.hh
constraints / DistancePairConstraint.cc	Conformation.hh
disulfides / DisulfideAtomIndices.cc	Residue.hh
disulfides / DisulfideAtomIndices.hh	Residue.fwd.hh
disulfides / DisulfideMatchingDatabase.cc	Atom.hh
disulfides / DisulfideMatchingDatabase.cc	Residue.hh
disulfides / DisulfideMatchingEnergy.cc	Residue.hh
disulfides / DisulfideMatchingEnergyContainer.cc	Residue.hh
disulfides / DisulfideMatchingPotential.cc	Atom.hh
disulfides / DisulfideMatchingPotential.cc	Conformation.hh
disulfides / DisulfideMatchingPotential.cc	Residue.hh
disulfides / DisulfideMatchingPotential.cc	util.hh
disulfides / DisulfideMatchingPotential.hh	Residue.fwd.hh
methods / DNA_BaseEnergy.cc	Residue.hh
dna / DNA_BasePotential.cc	Residue.hh
dna / DNA_BasePotential.hh	Residue.fwd.hh
dna / DNABFormPotential.hh	Residue.hh
dna / DNATorsionPotential.hh	Residue.hh
DockingScoreFunction.cc	Conformation.hh
DockingScoreFunction.hh	symmetry / SymmetricConformation.fwd.hh
DockingScoreFunction.hh	symmetry / SymmetryInfo.fwd.hh
dssp / Dssp.cc	Residue.hh
elec / ElecAtom.cc	Atom.hh
elec / ElecAtom.cc	Residue.hh
elec / ElecAtom.hh	Atom.hh
elec / ElecAtom.hh	Residue.fwd.hh
electron_density / ElecDensAllAtomCenEnergy.cc	Atom.hh
electron_density / ElecDensAllAtomCenEnergy.cc	Residue.hh
electron_density / ElecDensAllAtomCenEnergy.cc	symmetry / SymmetricConformation.hh
electron_density / ElecDensAllAtomCenEnergy.cc	symmetry / SymmetryInfo.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.cc	Atom.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.cc	Residue.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.hh	Residue.fwd.hh
electron_density_atomwise / ElecDensAtomwiseEnergy.hh	symmetry / SymmetryInfo.fwd.hh
electron_density / ElecDensCenEnergy.cc	Atom.hh
electron_density / ElecDensCenEnergy.cc	Residue.hh
electron_density / ElecDensCenEnergy.cc	symmetry / SymmetricConformation.hh
electron_density / ElecDensCenEnergy.cc	symmetry / SymmetryInfo.hh
electron_density / ElecDensEnergy.cc	Atom.hh
electron_density / ElecDensEnergy.cc	Residue.hh
electron_density / ElecDensEnergy.cc	symmetry / SymmetricConformation.hh
electron_density / ElecDensEnergy.cc	symmetry / SymmetryInfo.fwd.hh
electron_density / ElecDensEnergy.cc	symmetry / SymmetryInfo.hh
electron_density / ElectronDensity.cc	Atom.hh
electron_density / ElectronDensity.cc	Residue.hh
electron_density / ElectronDensity.cc	symmetry / SymmetricConformation.hh
electron_density / ElectronDensity.cc	symmetry / SymmetryInfo.hh
electron_density / ElectronDensity.hh	Atom.fwd.hh
electron_density / ElectronDensity.hh	Residue.fwd.hh
electron_density / ElectronDensity.hh	symmetry / SymmetryInfo.hh
electron_density_atomwise / ElectronDensityAtomwise.cc	Residue.hh
electron_density_atomwise / ElectronDensityAtomwise.cc	symmetry / SymmetryInfo.hh
electron_density_atomwise / ElectronDensityAtomwise.hh	Residue.fwd.hh
electron_density_atomwise / ElectronDensityAtomwise.hh	symmetry / SymmetryInfo.fwd.hh
Energies.cc	find_neighbors.hh
Energies.cc	PointGraph.hh
Energies.cc	PointGraphData.hh
Energies.hh	PointGraph.fwd.hh
methods / EnergyMethod.hh	RotamerSetBase.fwd.hh
methods / EnvEnergy.cc	Conformation.hh
methods / EnvEnergy.cc	Residue.hh
EnvPairPotential.cc	Residue.hh
EnvPairPotential.hh	Residue.fwd.hh
methods / EnvSmoothEnergy.cc	Atom.hh
methods / EnvSmoothEnergy.cc	Residue.hh
methods / EnvSmoothEnergy.cc	symmetry / SymmetricConformation.hh
methods / EnvSmoothEnergy.cc	symmetry / SymmetryInfo.hh
methods / EnvSmoothEnergy.hh	Atom.fwd.hh
etable / Etable.hh	Atom.hh
etable / etrie / EtableAtom.cc	Atom.hh
etable / etrie / EtableAtom.cc	Residue.hh
etable / etrie / EtableAtom.hh	Atom.hh
etable / etrie / EtableAtom.hh	Residue.fwd.hh
geometric_solvation / ExactOccludedHbondSolEnergy.cc	Atom.hh
geometric_solvation / ExactOccludedHbondSolEnergy.cc	Residue.hh
elec / FA_ElecEnergy.cc	RotamerSetBase.hh
elec / FA_ElecEnergyAroAll.cc	Residue.hh
elec / FA_ElecEnergyAroAll.cc	RotamerSetBase.hh
elec / FA_ElecEnergyAroAro.cc	Residue.hh
elec / FA_ElecEnergyAroAro.cc	RotamerSetBase.hh
methods / Fa_MbenvEnergy.cc	Residue.hh
methods / Fa_MbenvEnergy.hh	Atom.fwd.hh
methods / Fa_MbsolvEnergy.cc	Residue.hh
methods / Fa_MbsolvEnergy.hh	Atom.fwd.hh
constraints / FabConstraint.cc	Conformation.hh
constraints / FabConstraint.cc	Residue.hh
constraints / FabConstraint.hh	Conformation.fwd.hh
facts / FACTSEnergy.cc	RotamerSetBase.hh
facts / FACTSEnergy.cc	RotamerSetCacheableDataType.hh
facts / FACTSEnergy.hh	RotamerSetBase.hh
facts / FACTSPose.cc	Residue.hh
facts / FACTSPose.cc	ResidueFactory.hh
facts / FACTSPose.cc	RotamerSetBase.hh
facts / FACTSPose.cc	RotamerSetCacheableDataType.hh
facts / FACTSPose.hh	Residue.hh
facts / FACTSPose.hh	RotamerSetBase.hh
facts / FACTSPotential.cc	Residue.hh
facts / FACTSPotential.cc	ResidueFactory.hh
facts / FACTSPotential.cc	RotamerSetBase.hh
facts / FACTSPotential.cc	RotamerSetCacheableDataType.hh
facts / FACTSPotential.hh	Residue.hh
facts / FACTSPotential.hh	RotamerSetBase.hh
facts / FACTSResidue.cc	Residue.fwd.hh
facts / FACTSResidue.cc	Residue.hh
facts / FACTSResidue.cc	ResidueFactory.hh
facts / FACTSResidue.cc	RotamerSetBase.hh
facts / FACTSResidue.cc	RotamerSetCacheableDataType.hh
facts / FACTSResidue.hh	Residue.hh
facts / FACTSResidue.hh	RotamerSetBase.hh
membrane / FaMPEnvEnergy.cc	Conformation.hh
membrane / FaMPEnvEnergy.cc	membrane / MembraneInfo.hh
membrane / FaMPEnvEnergy.cc	Residue.hh
membrane / FaMPEnvEnergy.cc	membrane / SpanningTopology.hh
membrane / FaMPEnvEnergy.hh	Atom.fwd.hh
membrane / FaMPEnvEnergy.hh	Conformation.fwd.hh
membrane / FaMPEnvEnergy.hh	membrane / SpanningTopology.fwd.hh
membrane / FaMPEnvSmoothEnergy.cc	Atom.hh
membrane / FaMPEnvSmoothEnergy.cc	Conformation.hh
membrane / FaMPEnvSmoothEnergy.cc	membrane / MembraneInfo.hh
membrane / FaMPEnvSmoothEnergy.cc	Residue.hh
membrane / FaMPEnvSmoothEnergy.hh	Atom.fwd.hh
membrane / FaMPSolvEnergy.cc	Atom.hh
membrane / FaMPSolvEnergy.cc	Conformation.hh
membrane / FaMPSolvEnergy.cc	membrane / MembraneInfo.hh
membrane / FaMPSolvEnergy.cc	Residue.hh
membrane / FaMPSolvEnergy.cc	membrane / SpanningTopology.hh
membrane / FaMPSolvEnergy.fwd.hh	Atom.hh
membrane / FaMPSolvEnergy.fwd.hh	Conformation.hh
membrane / FaMPSolvEnergy.fwd.hh	membrane / SpanningTopology.hh
membrane / FaMPSolvEnergy.hh	Atom.fwd.hh
membrane / FaMPSolvEnergy.hh	Conformation.hh
membrane / FaMPSolvEnergy.hh	membrane / SpanningTopology.fwd.hh
electron_density / FastDensEnergy.cc	Atom.hh
electron_density / FastDensEnergy.cc	Residue.hh
electron_density / FastDensEnergy.cc	symmetry / SymmetricConformation.hh
electron_density / FastDensEnergy.cc	symmetry / SymmetryInfo.fwd.hh
electron_density / FastDensEnergy.cc	symmetry / SymmetryInfo.hh
saxs / FastSAXSEnergy.cc	Residue.hh
func / FourPointsFunc.cc	Residue.hh
methods / FreeMoietyEnergy.cc	Residue.hh
methods / FreeResidueBonusEnergy.cc	Residue.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.cc	Residue.hh
disulfides / FullatomDisulfideEnergy.cc	Conformation.hh
disulfides / FullatomDisulfideEnergy.cc	Residue.hh
disulfides / FullatomDisulfideEnergyContainer.cc	Residue.hh
disulfides / FullatomDisulfideEnergyContainer.cc	symmetry / SymmetryInfo.hh
disulfides / FullatomDisulfidePotential.cc	Residue.hh
disulfides / FullatomDisulfidePotential.hh	Residue.fwd.hh
methods / GaussianOverlapEnergy.cc	Residue.hh
methods / GenBornEnergy.cc	RotamerSetBase.hh
methods / GenBornEnergy.cc	RotamerSetCacheableDataType.hh
GenBornPotential.cc	Residue.hh
GenBornPotential.cc	ResidueFactory.hh
GenBornPotential.cc	RotamerSetBase.hh
GenBornPotential.cc	RotamerSetCacheableDataType.hh
GenBornPotential.hh	Residue.hh
GenBornPotential.hh	RotamerSetBase.fwd.hh
geometric_solvation / GeometricSolEnergyEvaluator.cc	Residue.hh
geometric_solvation / GeometricSolEnergyEvaluator.hh	Residue.fwd.hh
methods / GoapEnergy.cc	Residue.hh
hackaro / HackAroEnergy.cc	Residue.hh
hbonds / HBEvalTuple.cc	Residue.hh
hbonds / HBEvalTuple.hh	Residue.fwd.hh
hbonds / HBondEnergy.cc	Conformation.hh
hbonds / HBondEnergy.cc	membrane / MembraneInfo.hh
hbonds / HBondEnergy.cc	Residue.hh
hbonds / HBondEnergy.cc	RotamerSetBase.hh
hbonds / hbonds.cc	Residue.hh
hbonds / hbonds.hh	Residue.fwd.hh
hbonds / hbonds_geom.cc	Residue.hh
hbonds / hbonds_geom.hh	Residue.fwd.hh
hbonds / HBondSet.cc	Residue.hh
hbonds / HBondSet.hh	Residue.fwd.hh
methods / HybridVDW_Energy.cc	Residue.hh
constraints / KofNConstraint.cc	Conformation.fwd.hh
constraints / KofNConstraint.hh	Conformation.fwd.hh
sasa / LeGrandSasa.cc	Residue.hh
sasa / LeGrandSasa.hh	Residue.fwd.hh
methods / LinearChainbreakEnergy.cc	Conformation.hh
methods / LinearChainbreakEnergy.cc	Residue.hh
methods / LinearChainbreakEnergy.hh	Residue.fwd.hh
methods / LK_BallEnergy.cc	Residue.hh
methods / LK_BallEnergy.cc	ResidueFactory.hh
methods / LK_BallEnergy.cc	RotamerSetBase.hh
methods / LK_BallEnergy.cc	RotamerSetCacheableDataType.hh
methods / LK_BallEnergy.hh	Atom.fwd.hh
methods / LK_BallEnergy.hh	RotamerSetBase.fwd.hh
methods / LK_BallInfo.cc	Residue.hh
methods / LK_BallInfo.cc	ResidueFactory.hh
methods / LK_BallInfo.hh	Residue.hh
methods / LK_hack.cc	Residue.hh
methods / LK_hack.hh	Atom.fwd.hh
methods / LK_PolarNonPolarEnergy.cc	Residue.hh
methods / LK_PolarNonPolarEnergy.hh	Atom.fwd.hh
constraints / LocalCoordinateConstraint.cc	Conformation.hh
constraints / LocalCoordinateConstraint.hh	Residue.hh
loop_graph / LoopCloseEnergy.cc	Residue.hh
loop_graph / LoopCloseEnergy.hh	Residue.fwd.hh
loop_graph / LoopGraph.cc	Residue.hh
Membrane_FAPotential.cc	Residue.hh
Membrane_FAPotential.hh	Residue.hh
methods / MembraneCbetaEnergy.cc	Residue.hh
methods / MembraneCenPairEnergy.cc	Residue.hh
methods / MembraneCenPairEnergy.cc	symmetry / SymmetricConformation.hh
methods / MembraneCenPairEnergy.cc	symmetry / SymmetryInfo.hh
methods / MembraneEnvEnergy.cc	Residue.hh
methods / MembraneEnvSmoothEnergy.cc	Atom.hh
methods / MembraneEnvSmoothEnergy.cc	Residue.hh
methods / MembraneEnvSmoothEnergy.hh	Atom.fwd.hh
methods / MembraneLipo.cc	symmetry / SymmetricConformation.hh
methods / MembraneLipo.cc	symmetry / SymmetryInfo.hh
MembranePotential.cc	Conformation.hh
MembranePotential.cc	Residue.hh
MembranePotential.cc	ResidueFactory.hh
MembranePotential.cc	symmetry / SymmetricConformation.hh
MembranePotential.cc	symmetry / SymmetryInfo.hh
MembranePotential.hh	Residue.hh
methods / MetalloPlacementEnergy.cc	symmetry / util.hh
MinimizationGraph.hh	Residue.fwd.hh
MinScoreScoreFunction.cc	Conformation.hh
MinScoreScoreFunction.hh	symmetry / SymmetricConformation.fwd.hh
MinScoreScoreFunction.hh	symmetry / SymmetryInfo.fwd.hh
methods / MMBondAngleEnergy.cc	Residue.hh
mm / MMBondAngleResidueTypeParamSet.cc	Conformation.hh
mm / MMBondAngleResidueTypeParamSet.hh	Conformation.fwd.hh
methods / MMBondLengthEnergy.cc	Residue.hh
mm / mmtrie / MMEnergyTableAtom.cc	Atom.hh
mm / mmtrie / MMEnergyTableAtom.cc	Residue.hh
mm / mmtrie / MMEnergyTableAtom.hh	Atom.hh
mm / mmtrie / MMEnergyTableAtom.hh	Residue.fwd.hh
methods / MMLJEnergyInter.cc	Residue.hh
methods / MMLJEnergyInter.cc	RotamerSetBase.hh
methods / MMLJEnergyIntra.cc	Residue.hh
methods / MMTorsionEnergy.cc	Residue.hh
sc / MolecularSurfaceCalculator.cc	Residue.hh
sc / MolecularSurfaceCalculator.hh	Residue.fwd.hh
membrane / MPCBetaEnergy.cc	Conformation.hh
membrane / MPCBetaEnergy.cc	membrane / MembraneInfo.hh
membrane / MPCBetaEnergy.cc	Residue.hh
membrane / MPCBetaEnergy.cc	membrane / SpanningTopology.hh
membrane / MPCBetaEnergy.hh	Conformation.hh
membrane / MPEnvEnergy.cc	Conformation.hh
membrane / MPEnvEnergy.cc	membrane / MembraneInfo.hh
membrane / MPEnvEnergy.cc	Residue.hh
membrane / MPEnvEnergy.cc	membrane / SpanningTopology.hh
membrane / MPEnvEnergy.hh	Conformation.fwd.hh
membrane / MPEnvEnergy.hh	Residue.fwd.hh
membrane / MPEnvEnergy.hh	membrane / SpanningTopology.fwd.hh
membrane / MPLipoEnergy.cc	Conformation.hh
membrane / MPLipoEnergy.cc	membrane / LipidAccInfo.hh
membrane / MPLipoEnergy.cc	membrane / MembraneInfo.hh
membrane / MPLipoEnergy.cc	membrane / SpanningTopology.hh
membrane / MPNonHelixPenalty.cc	Conformation.hh
membrane / MPNonHelixPenalty.cc	membrane / MembraneInfo.hh
membrane / MPNonHelixPenalty.cc	Residue.hh
membrane / MPNonHelixPenalty.cc	membrane / Span.hh
membrane / MPNonHelixPenalty.cc	membrane / SpanningTopology.hh
membrane / MPNonHelixPenalty.cc	symmetry / SymmetricConformation.hh
membrane / MPNonHelixPenalty.cc	symmetry / SymmetryInfo.hh
membrane / MPNonHelixPenalty.hh	membrane / Span.fwd.hh
membrane / MPPairEnergy.cc	Conformation.hh
membrane / MPPairEnergy.cc	membrane / MembraneInfo.hh
membrane / MPPairEnergy.cc	Residue.hh
membrane / MPPairEnergy.cc	membrane / SpanningTopology.hh
membrane / MPPairEnergy.cc	symmetry / SymmetricConformation.hh
membrane / MPPairEnergy.cc	symmetry / SymmetryInfo.hh
membrane / MPSecStructPenalty.cc	Conformation.hh
membrane / MPSecStructPenalty.cc	Residue.hh
membrane / MPSecStructPenalty.cc	membrane / SpanningTopology.hh
membrane / MPTerminiPenalty.cc	Conformation.hh
membrane / MPTerminiPenalty.cc	membrane / MembraneInfo.hh
membrane / MPTerminiPenalty.cc	Residue.hh
membrane / MPTMProjPenalty.cc	Conformation.hh
membrane / MPTMProjPenalty.cc	membrane / MembraneInfo.hh
membrane / MPTMProjPenalty.cc	Residue.hh
membrane / MPTMProjPenalty.cc	membrane / Span.hh
membrane / MPTMProjPenalty.cc	membrane / SpanningTopology.hh
membrane / MPTMProjPenalty.cc	symmetry / SymmetricConformation.hh
membrane / MPTMProjPenalty.cc	symmetry / SymmetryInfo.hh
membrane / MPTMProjPenalty.hh	membrane / Span.fwd.hh
constraints / MultiConstraint.hh	Conformation.fwd.hh
constraints / NamedAtomPairConstraint.cc	Residue.hh
NeighborList.cc	Residue.hh
NeighborList.tmpl.hh	Atom.fwd.hh
NeighborList.tmpl.hh	Atom.hh
NeighborList.tmpl.hh	Conformation.fwd.hh
NeighborList.tmpl.hh	Conformation.hh
NeighborList.tmpl.hh	signals / ConnectionEvent.fwd.hh
NeighborList.tmpl.hh	signals / ConnectionEvent.hh
NeighborList.tmpl.hh	find_neighbors.fwd.hh
NeighborList.tmpl.hh	find_neighbors.hh
NeighborList.tmpl.hh	signals / GeneralEvent.fwd.hh
NeighborList.tmpl.hh	signals / GeneralEvent.hh
NeighborList.tmpl.hh	signals / IdentityEvent.fwd.hh
NeighborList.tmpl.hh	signals / IdentityEvent.hh
NeighborList.tmpl.hh	signals / LengthEvent.fwd.hh
NeighborList.tmpl.hh	signals / LengthEvent.hh
NeighborList.tmpl.hh	orbitals / OrbitalXYZCoords.hh
NeighborList.tmpl.hh	PointGraph.fwd.hh
NeighborList.tmpl.hh	PointGraph.hh
NeighborList.tmpl.hh	PointGraphData.fwd.hh
NeighborList.tmpl.hh	PointGraphData.hh
NeighborList.tmpl.hh	PseudoBond.fwd.hh
NeighborList.tmpl.hh	Residue.fwd.hh
NeighborList.tmpl.hh	Residue.hh
NeighborList.tmpl.hh	RotamerSetBase.fwd.hh
NeighborList.tmpl.hh	signals / XYZEvent.fwd.hh
NeighborList.tmpl.hh	signals / XYZEvent.hh
methods / NMerPSSMEnergy.cc	Conformation.hh
methods / NMerPSSMEnergy.cc	Residue.hh
methods / NMerRefEnergy.cc	Residue.hh
methods / NMerSVMEnergy.cc	Conformation.hh
methods / NMerSVMEnergy.cc	Residue.hh
geometric_solvation / non_scorefxn_exact_model.cc	Atom.hh
geometric_solvation / non_scorefxn_exact_model.cc	Residue.hh
constraints / NonResidueTypeConstraint.cc	Residue.hh
constraints / NonResidueTypeConstraint.hh	Conformation.fwd.hh
nv / NVscore.cc	Residue.hh
geometric_solvation / OccludedHbondSolEnergy.cc	Residue.hh
geometric_solvation / OccludedHbondSolEnergy_onebody.cc	Residue.hh
OmegaTether.cc	Residue.hh
OmegaTether.hh	Residue.fwd.hh
methods / OmegaTetherEnergy.cc	Residue.hh
methods / OneBodyEnergy.hh	Residue.fwd.hh
orbitals / OrbitalsAssigned.cc	Residue.hh
orbitals / OrbitalsAssigned.hh	Residue.fwd.hh
orbitals / OrbitalsScore.cc	Conformation.hh
orbitals / OrbitalsScore.cc	Residue.hh
orbitals / OrbitalsScore.cc	RotamerSetBase.hh
orbitals / OrbitalsStatistics.cc	Residue.hh
P_AA.cc	Residue.hh
P_AA.hh	Residue.fwd.hh
methods / P_AA_Energy.hh	Residue.fwd.hh
methods / P_AA_pp_Energy.cc	Residue.hh
methods / P_AA_pp_Energy.hh	Residue.fwd.hh
methods / PairEnergy.cc	Residue.hh
methods / PairEnergy.cc	RotamerSetBase.hh
PairEPotential.cc	Residue.hh
PairEPotential.hh	Residue.fwd.hh
electron_density / PattersonCorrEnergy.cc	Atom.hh
electron_density / PattersonCorrEnergy.cc	Residue.hh
electron_density / PattersonCorrEnergy.cc	symmetry / SymmetricConformation.hh
electron_density / PattersonCorrEnergy.cc	symmetry / SymmetryInfo.fwd.hh
methods / PeptideBondEnergy.cc	Residue.hh
methods / pHEnergy.cc	Residue.hh
cryst / PhenixInterface.cc	Residue.hh
cryst / PhenixInterface.cc	ResidueFactory.hh
cryst / PhenixInterface.cc	symmetry / SymmetricConformation.hh
cryst / PhenixInterface.cc	symmetry / SymmetryInfo.hh
cryst / PhenixInterface.cc	util.hh
cryst / PhenixInterface.hh	Residue.fwd.hh
methods / PoissonBoltzmannEnergy.cc	Residue.hh
PoissonBoltzmannPotential.cc	Residue.hh
PoissonBoltzmannPotential.hh	Residue.fwd.hh
methods / ProClosureEnergy.cc	Residue.hh
methods / ProQ_Energy.cc	symmetry / SymmetricConformation.hh
methods / ProQ_Energy.cc	symmetry / SymmetryInfo.hh
methods / ProQ_Energy.hh	Residue.hh
ProQPotential.cc	Conformation.hh
ProQPotential.cc	Residue.hh
ProQPotential.cc	symmetry / SymmetricConformation.hh
ProQPotential.cc	symmetry / SymmetryInfo.hh
Rama2BOffset.cc	Residue.hh
Rama2BOffset.hh	Residue.fwd.hh
methods / Rama2BOffsetEnergy.cc	Conformation.hh
methods / Rama2BOffsetEnergy.cc	Residue.hh
methods / Rama2BOffsetEnergy.cc	ResidueFactory.hh
methods / Rama2BOffsetEnergy.cc	symmetry / SymmetryInfo.hh
Ramachandran.cc	ppo_torsion_bin.hh
Ramachandran.cc	Residue.hh
Ramachandran.cc	util.hh
Ramachandran.hh	ppo_torsion_bin.fwd.hh
Ramachandran.hh	Residue.fwd.hh
Ramachandran2B.cc	ppo_torsion_bin.hh
Ramachandran2B.cc	Residue.hh
Ramachandran2B.hh	ppo_torsion_bin.fwd.hh
Ramachandran2B.hh	Residue.fwd.hh
methods / RamachandranEnergy.cc	Residue.hh
methods / RamachandranEnergy2B.cc	Residue.hh
methods / ReferenceEnergy.cc	Residue.hh
methods / ReferenceEnergyNoncanonical.cc	Residue.hh
ResidualDipolarCoupling.cc	Residue.hh
methods / ResidualDipolarCouplingEnergy.cc	Residue.hh
methods / ResidualDipolarCouplingEnergy_Rohl.cc	Residue.hh
methods / ResidualDipolarCouplingEnergyRigidSegments.cc	Residue.hh
ResidueNeighborList.cc	Atom.hh
ResidueNeighborList.cc	Residue.hh
ResidueNeighborList.hh	Residue.fwd.hh
constraints / ResidueTypeConstraint.cc	Residue.hh
constraints / ResidueTypeConstraint.hh	Conformation.fwd.hh
constraints / ResidueTypeLinkingConstraint.cc	Residue.hh
constraints / ResidueTypeLinkingConstraint.hh	Conformation.fwd.hh
methods / RG_Energy.cc	Atom.hh
methods / RG_Energy.cc	Residue.hh
methods / RG_Energy_Fast.cc	Atom.hh
methods / RG_Energy_Fast.cc	Residue.hh
methods / RG_Energy_Fast.cc	symmetry / SymmetricConformation.hh
methods / RG_Energy_Fast.cc	symmetry / SymmetryInfo.fwd.hh
methods / RG_Energy_Fast.cc	symmetry / SymmetryInfo.hh
rna / RG_Energy_RNA.cc	Atom.hh
rna / RG_Energy_RNA.cc	Residue.hh
methods / RG_LocalEnergy.cc	Atom.hh
methods / RG_LocalEnergy.cc	Residue.hh
rms_util.cc	Residue.hh
rms_util.cc	symmetry / SymmetricConformation.hh
rms_util.cc	symmetry / SymmetryInfo.hh
rms_util.hh	Residue.fwd.hh
rms_util.tmpl.hh	Atom.fwd.hh
rms_util.tmpl.hh	Atom.hh
rms_util.tmpl.hh	Conformation.fwd.hh
rms_util.tmpl.hh	Conformation.hh
rms_util.tmpl.hh	signals / ConnectionEvent.fwd.hh
rms_util.tmpl.hh	signals / ConnectionEvent.hh
rms_util.tmpl.hh	signals / GeneralEvent.fwd.hh
rms_util.tmpl.hh	signals / GeneralEvent.hh
rms_util.tmpl.hh	signals / IdentityEvent.fwd.hh
rms_util.tmpl.hh	signals / IdentityEvent.hh
rms_util.tmpl.hh	signals / LengthEvent.fwd.hh
rms_util.tmpl.hh	signals / LengthEvent.hh
rms_util.tmpl.hh	orbitals / OrbitalXYZCoords.hh
rms_util.tmpl.hh	PseudoBond.fwd.hh
rms_util.tmpl.hh	Residue.fwd.hh
rms_util.tmpl.hh	Residue.hh
rms_util.tmpl.hh	symmetry / SymDof.fwd.hh
rms_util.tmpl.hh	symmetry / SymmData.fwd.hh
rms_util.tmpl.hh	symmetry / SymmetricConformation.fwd.hh
rms_util.tmpl.hh	symmetry / SymmetricConformation.hh
rms_util.tmpl.hh	symmetry / SymmetryInfo.fwd.hh
rms_util.tmpl.hh	symmetry / SymmetryInfo.hh
rms_util.tmpl.hh	symmetry / SymSlideInfo.fwd.hh
rms_util.tmpl.hh	symmetry / SymSlideInfo.hh
rms_util.tmpl.hh	signals / XYZEvent.fwd.hh
rms_util.tmpl.hh	signals / XYZEvent.hh
rna / RNA_BaseBaseEnergy.cc	Residue.hh
rna / RNA_BulgeEnergy.cc	Residue.hh
rna / RNA_CentroidInfo.cc	Residue.hh
rna / RNA_CentroidInfo.hh	Residue.fwd.hh
rna / data / RNA_ChemicalMappingEnergy.cc	Residue.hh
rna / chemical_shift / RNA_ChemicalShiftEnergy.cc	Atom.hh
rna / chemical_shift / RNA_ChemicalShiftEnergy.cc	Residue.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.cc	Atom.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.cc	Residue.hh
rna / chemical_shift / RNA_CS_MagneticAnisotropy.hh	Residue.hh
rna / chemical_shift / RNA_CS_Parameters.hh	Residue.hh
rna / chemical_shift / RNA_CS_RingCurrent.hh	Residue.hh
rna / chemical_shift / RNA_CS_Util.hh	Residue.hh
rna / data / RNA_DataBackboneEnergy.cc	Residue.hh
rna / data / RNA_DMS_Potential.cc	Residue.hh
rna / data / RNA_DMS_Potential.cc	ResidueFactory.hh
rna / data / RNA_DMS_Potential.hh	Residue.fwd.hh
elec / RNA_FA_ElecEnergy.cc	Residue.hh
elec / RNA_FA_ElecEnergy.cc	RotamerSetBase.hh
rna / RNA_FullAtomStackingEnergy.cc	Residue.hh
rna / RNA_FullAtomVDW_BasePhosphate.cc	Residue.hh
rna / RNA_JR_SuiteEnergy.cc	Residue.hh
rna / RNA_JR_SuiteEnergy.hh	Atom.fwd.hh
rna / RNA_LJ_BaseEnergy.cc	Residue.hh
rna / RNA_LJ_BaseEnergy.hh	Atom.fwd.hh
rna / RNA_LowResolutionPotential.cc	Residue.hh
rna / RNA_LowResolutionPotential.cc	ResidueFactory.hh
rna / RNA_LowResolutionPotential.hh	Residue.fwd.hh
rna / RNA_Mg_Energy.cc	Residue.hh
rna / RNA_Mg_Energy.hh	Residue.fwd.hh
rna / RNA_Mg_KnowledgeBasedPotential.cc	Residue.hh
rna / RNA_Mg_KnowledgeBasedPotential.hh	Residue.fwd.hh
rna / RNA_PairwiseLowResolutionEnergy.cc	Residue.hh
rna / RNA_ScoringInfo.hh	Residue.fwd.hh
rna / RNA_SugarCloseEnergy.cc	Residue.hh
rna / RNA_SuiteEnergy.cc	Conformation.hh
rna / RNA_SuiteEnergy.cc	Residue.hh
rna / RNA_SuiteEnergy.cc	symmetry / SymmetryInfo.hh
rna / RNA_SuitePotential.cc	Residue.hh
rna / RNA_SuitePotential.hh	Residue.fwd.hh
rna / RNA_TorsionPotential.cc	Conformation.hh
rna / RNA_TorsionPotential.hh	Residue.fwd.hh
rna / RNA_VDW_Energy.cc	Residue.hh
trie / RotamerTrieBase.hh	AbstractRotamerTrie.hh
sasa.cc	Residue.hh
sasa.hh	Residue.fwd.hh
saxs / SAXSEnergy.cc	Residue.hh
saxs / SAXSEnergyFA.hh	RotamerSetBase.fwd.hh
ScoreFunction.cc	Residue.hh
ScoreFunction.hh	Residue.fwd.hh
ScoreFunction.hh	RotamerSetBase.fwd.hh
dna / scoring.hh	Residue.fwd.hh
SecondaryStructurePotential.cc	Conformation.hh
SecondaryStructurePotential.cc	Residue.hh
SecondaryStructurePotential.cc	symmetry / SymmetricConformation.hh
SecondaryStructurePotential.cc	symmetry / SymmetryInfo.hh
SecondaryStructurePotential.hh	symmetry / SymmetricConformation.fwd.hh
SecondaryStructurePotential.hh	symmetry / SymmetryInfo.fwd.hh
methods / SequenceDependentRefEnergy.cc	Residue.hh
constraints / SequenceProfileConstraint.cc	Residue.hh
dna / setup.cc	Residue.hh
sc / ShapeComplementarityCalculator.cc	Residue.hh
sc / ShapeComplementarityCalculator.hh	Residue.fwd.hh
methods / ShortRangeTwoBodyEnergy.cc	Residue.hh
methods / ShortRangeTwoBodyEnergy.cc	RotamerSetBase.hh
constraints / SiteConstraint.cc	Conformation.hh
constraints / SiteConstraint.hh	Conformation.fwd.hh
constraints / SiteConstraintResidues.cc	Conformation.hh
constraints / SiteConstraintResidues.hh	Conformation.fwd.hh
methods / SmoothCenPairEnergy.cc	Residue.hh
methods / SmoothEnvEnergy.cc	Residue.hh
SmoothEnvPairPotential.cc	Residue.hh
SmoothEnvPairPotential.hh	Residue.fwd.hh
SS_Info.cc	Residue.hh
rna / StackElecEnergy.cc	Residue.hh
methods / SuckerEnergy.cc	Residue.hh
solid_surface / SurfaceEnergies.cc	find_neighbors.hh
solid_surface / SurfaceEnergies.cc	PointGraph.hh
solid_surface / SurfaceEnergies.hh	find_neighbors.fwd.hh
sym_e / symE.cc	Residue.hh
symmetry / SymmetricEnergies.cc	Conformation.hh
symmetry / SymmetricEnergies.cc	find_neighbors.hh
symmetry / SymmetricEnergies.cc	PointGraph.hh
symmetry / SymmetricEnergies.cc	PointGraphData.hh
symmetry / SymmetricEnergies.cc	symmetry / SymmetricConformation.hh
symmetry / SymmetricEnergies.cc	symmetry / SymmetryInfo.hh
symmetry / SymmetricEnergies.hh	PointGraph.fwd.hh
symmetry / SymmetricEnergies.hh	symmetry / SymmetricConformation.fwd.hh
symmetry / SymmetricEnergies.hh	symmetry / SymmetryInfo.fwd.hh
methods / SymmetricLigandEnergy.cc	Residue.hh
symmetry / SymmetricScoreFunction.cc	symmetry / SymmetricConformation.hh
symmetry / SymmetricScoreFunction.cc	symmetry / SymmetryInfo.hh
symmetry / SymmetricScoreFunction.hh	symmetry / SymmetricConformation.fwd.hh
symmetry / SymmetricScoreFunction.hh	symmetry / SymmetryInfo.fwd.hh
TMscore.hh	Residue.fwd.hh
trie / trie.functions.fwd.hh	Residue.fwd.hh
trie / trie.functions.fwd.hh	RotamerSetBase.fwd.hh
trie / trie.functions.hh	Residue.hh
trie / trie.functions.hh	RotamerSetBase.hh
etable / etrie / TrieCountPairGeneric.cc	PseudoBond.hh
etable / etrie / TrieCountPairGeneric.cc	Residue.hh
methods / TwoBodyEnergy.cc	Residue.hh
methods / TwoBodyEnergy.cc	RotamerSetBase.hh
methods / TwoBodyEnergy.hh	Residue.fwd.hh
methods / TwoBodyEnergy.hh	RotamerSetBase.fwd.hh
methods / UnfoldedStateEnergy.cc	Residue.hh
UnfoldedStatePotential.cc	Residue.hh
util.cc	Residue.hh
sasa / util.cc	Residue.hh
methods / util.cc	Residue.hh
electron_density / util.cc	Residue.hh
cryst / util.cc	Residue.hh
constraints / util.cc	Residue.hh
util.hh	Residue.fwd.hh
sasa / util.hh	Residue.fwd.hh
methods / util.hh	Residue.fwd.hh
vdwaals / VDW_Energy.cc	Residue.hh
vdwaals / VDWTrie.cc	Residue.hh
vdwaals / VDWTrie.hh	Residue.hh
methods / WaterAdductHBondEnergy.hh	Residue.fwd.hh
WaterAdductHBondPotential.cc	Residue.hh
WaterAdductHBondPotential.hh	Residue.fwd.hh
methods / WaterAdductIntraEnergy.cc	Residue.hh
cryst / XtalMLEnergy.cc	Residue.hh
func / XYZ_Func.cc	Conformation.hh
func / XYZ_Func.cc	Residue.hh
func / XYZ_Func.hh	Conformation.fwd.hh
func / XYZ_Func.hh	Residue.fwd.hh
methods / YHHPlanarityEnergy.cc	Residue.hh
methods / YHHPlanarityEnergy.hh	Residue.fwd.hh