Rosetta Core  2014.35
chemical Directory Reference
Directory dependency graph for chemical:
src/core/chemical

Directories

directory  carbohydrates
 
directory  gasteiger
 
directory  orbitals
 
directory  residue_properties
 
directory  rna
 
directory  sdf
 

Files

file  AA.cc
 translation between amino acid enum and string name/one letter char codes
 
file  AA.hh
 
file  Adduct.cc
 definition of residue adduct class
 
file  Adduct.fwd.hh
 declaration of class for adducts on residues
 
file  Adduct.hh
 declaration of implementation class for residue adducts
 
file  adduct_util.cc
 
file  adduct_util.hh
 
file  Atom.cc
 Method definitions for chemical::Atom.
 
file  Atom.fwd.hh
 Class declaration for chemical::Atom.
 
file  Atom.hh
 Class definitions for chemical::Atom.
 
file  AtomICoor.cc
 declaration of implementation class for abstract class Residue
 
file  AtomICoor.fwd.hh
 declaration of implementation class for abstract class Residue
 
file  AtomICoor.hh
 declaration of implementation class for abstract class Residue
 
file  AtomType.cc
 A class for defining atom parameters, known as atom_types.
 
file  AtomType.fwd.hh
 
file  AtomType.hh
 A class for defining atom parameters, known as atom_types.
 
file  atomtype_support.cc
 
file  atomtype_support.hh
 
file  AtomTypeDatabaseIO.cc
 Write chemical information associated with atom types to a database.
 
file  AtomTypeDatabaseIO.fwd.hh
 
file  AtomTypeDatabaseIO.hh
 
file  AtomTypeSet.cc
 
file  AtomTypeSet.fwd.hh
 
file  AtomTypeSet.hh
 
file  automorphism.cc
 
file  automorphism.hh
 
file  Bond.cc
 
file  Bond.fwd.hh
 
file  Bond.hh
 
file  bond_support.cc
 support functions for class Bond; functions that should not be included as part of the class.
 
file  bond_support.hh
 support functions for class Bond; functions that should not be included as part of the class.
 
file  ChemicalManager.cc
 
file  ChemicalManager.fwd.hh
 Chemical manager class header.
 
file  ChemicalManager.hh
 
file  ElectronConfiguration.cc
 The data for the BCL electron configuration.
 
file  ElectronConfiguration.fwd.hh
 
file  ElectronConfiguration.hh
 The data for the BCL electron configuration.
 
file  Element.cc
 The data for the element types.
 
file  Element.fwd.hh
 
file  Element.hh
 The data for the element types.
 
file  Elements.cc
 
file  Elements.hh
 All the elements known to mankind (me)...as of4/18/2014.
 
file  ElementSet.cc
 
file  ElementSet.fwd.hh
 
file  ElementSet.hh
 
file  icoor_support.cc
 external support for manipulating the ResidueType's icoor/ideal_xyz
 
file  icoor_support.hh
 
file  IdealBondLengthSet.cc
 
file  IdealBondLengthSet.fwd.hh
 
file  IdealBondLengthSet.hh
 
file  MMAtomType.cc
 Molecular mechanics atom type class.
 
file  MMAtomType.fwd.hh
 
file  MMAtomType.hh
 Molecular mechanics atom type class.
 
file  MMAtomTypeSet.cc
 
file  MMAtomTypeSet.fwd.hh
 
file  MMAtomTypeSet.hh
 
file  Orbital.cc
 
file  Orbital.fwd.hh
 
file  Orbital.hh
 
file  Patch.cc
 Implementation class for abstract class Residue.
 
file  Patch.fwd.hh
 
file  Patch.hh
 
file  PatchOperation.cc
 Polymorphic classes representing the contents of a residue-type patch file.
 
file  PatchOperation.fwd.hh
 
file  PatchOperation.hh
 Polymorphic classes representing the contents of a residue-type patch file.
 
file  property_mappings.cc
 Method definitions for two private static methods declared in ResidueProperties.hh.
 
file  ResConnID.cc
 
file  ResConnID.fwd.hh
 
file  ResConnID.hh
 Declaration of class to represent the chemical bond between two ResidueConnections from one conformation::Residue to another.
 
file  residue_io.cc
 helper methods for ResidueType input/output
 
file  residue_io.hh
 
file  residue_support.cc
 support functions for class residue; functions that should not be included as part of the class.
 
file  residue_support.hh
 support functions for class residue; functions that should not be included as part of the class.
 
file  ResidueConnection.cc
 
file  ResidueConnection.fwd.hh
 declaration of implementation class for abstract class Residue
 
file  ResidueConnection.hh
 Inter-residue chemical bond connection point class declaration.
 
file  ResidueDatabaseIO.cc
 
file  ResidueDatabaseIO.fwd.hh
 
file  ResidueDatabaseIO.hh
 
file  ResidueGraphTypes.cc
 Graph structure for ResidueType.
 
file  ResidueGraphTypes.hh
 Graph structure for ResidueType.
 
file  ResidueLoader.cc
 implementation of the Residue Loader
 
file  ResidueLoader.fwd.hh
 forward headers for the Residue Loader
 
file  ResidueLoader.hh
 headers for the Residue Loader
 
file  ResidueLoaderCreator.hh
 
file  ResidueLoaderOptions.cc
 forward headers for the Residue Loader Options
 
file  ResidueLoaderOptions.fwd.hh
 forward headers for the Residue Loader Options
 
file  ResidueLoaderOptions.hh
 forward headers for the Residue Loader Options
 
file  ResidueLoaderOptionsCreator.hh
 
file  ResidueProperties.cc
 Method definitions for ResidueProperties.
 
file  ResidueProperties.fwd.hh
 Forward declarations for ResidueProperties.
 
file  ResidueProperties.hh
 Declarations and simple accessor/mutator definitions for ResidueProperties.
 
file  ResidueProperty.hh
 Enumeration definition for ResidueProperty.
 
file  ResidueSelector.cc
 
file  ResidueSelector.fwd.hh
 
file  ResidueSelector.hh
 
file  ResidueType.cc
 Method definitions for ResidueType.
 
file  ResidueType.fwd.hh
 declaration of implementation class for abstract class Residue
 
file  ResidueType.hh
 Method declarations and simple accessors/getters for ResidueType.
 
file  ResidueTypeKinWriter.cc
 Class to write kinemage-formatted output for Residue and chemical.
 
file  ResidueTypeKinWriter.fwd.hh
 Class to write kinemage-formatted output for ResidueType.
 
file  ResidueTypeKinWriter.hh
 Class to write kinemage-formatted output for ResidueType.
 
file  ResidueTypeSet.cc
 ResidueTypeSet class.
 
file  ResidueTypeSet.fwd.hh
 
file  ResidueTypeSet.hh
 
file  ring_conformer_io.cc
 Database input/output function definitions for ring-conformer-specific data.
 
file  ring_conformer_io.hh
 Database input/output function declarations for ring-conformer-specific data.
 
file  RingConformerSet.cc
 Method definitions for RingConformerSet.
 
file  RingConformerSet.fwd.hh
 Forward declarations for RingConformerSet.
 
file  RingConformerSet.hh
 Declarations and simple accessor/mutator definitions for RingConformerSet.
 
file  types.hh
 rosetta project type declarations
 
file  util.cc
 Utilities for modifying and utilizing Residues and other core::chemical classes.
 
file  util.hh
 Utilities for modifying and utilizing Residues and other core::chemical classes.
 
file  VariantType.cc
 VariantTypes are used by Patches.
 
file  VariantType.fwd.hh
 
file  VariantType.hh