Rosetta Core  2014.35
constraints Directory Reference
Directory dependency graph for constraints:
src/core/scoring/constraints

Files

file  AmbiguousConstraint.cc
 contains declarations for a type of constraint that holds a number of constraints
 
file  AmbiguousConstraint.fwd.hh
 
file  AmbiguousConstraint.hh
 contains declarations for a type of constraint that holds multiple other
 
file  AmbiguousNMRConstraint.cc
 contains declarations for a type of constraint that holds a number of constraints
 
file  AmbiguousNMRConstraint.fwd.hh
 
file  AmbiguousNMRConstraint.hh
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  AmbiguousNMRDistanceConstraint.cc
 
file  AmbiguousNMRDistanceConstraint.fwd.hh
 
file  AmbiguousNMRDistanceConstraint.hh
 
file  AngleConstraint.cc
 Definition of AngularConstraints.
 
file  AngleConstraint.fwd.hh
 
file  AngleConstraint.hh
 
file  AtomPairConstraint.cc
 
file  AtomPairConstraint.fwd.hh
 
file  AtomPairConstraint.hh
 
file  BackboneStubConstraint.cc
 
file  BackboneStubConstraint.fwd.hh
 
file  BackboneStubConstraint.hh
 
file  BackboneStubLinearConstraint.cc
 
file  BackboneStubLinearConstraint.fwd.hh
 
file  BackboneStubLinearConstraint.hh
 
file  BasicConstraintCreators.cc
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  BasicConstraintCreators.hh
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  BigBinConstraint.cc
 
file  BigBinConstraint.hh
 
file  BoundConstraint.cc
 
file  BoundConstraint.fwd.hh
 forward declaration
 
file  BoundConstraint.hh
 
file  ConstantConstraint.cc
 
file  ConstantConstraint.hh
 
file  Constraint.cc
 
file  Constraint.fwd.hh
 
file  Constraint.hh
 Base class definition for Constraint class hierarchy.
 
file  ConstraintCreator.cc
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  ConstraintCreator.fwd.hh
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  ConstraintCreator.hh
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  ConstraintEnergyContainer.cc
 Constraints Energy Container class implementation.
 
file  ConstraintEnergyContainer.fwd.hh
 Constraints Energy Container class declaration.
 
file  ConstraintEnergyContainer.hh
 Constraints Energy Container class declaration.
 
file  ConstraintFactory.cc
 Factory for creating various types of constraints.
 
file  ConstraintFactory.hh
 Factory for creating various types of constraints.
 
file  ConstraintGraph.cc
 Constraints Energy Container class declaration.
 
file  ConstraintGraph.fwd.hh
 Constraints Energy Graph class forward declaration.
 
file  ConstraintGraph.hh
 Constraints Energy Container class declaration.
 
file  ConstraintIO.cc
 
file  ConstraintIO.hh
 
file  Constraints.cc
 
file  Constraints.fwd.hh
 
file  Constraints.hh
 
file  ConstraintsEnergy.cc
 Constraints Energy Method declaration.
 
file  ConstraintsEnergy.fwd.hh
 Constraints Energy Method forward declaration.
 
file  ConstraintsEnergy.hh
 Constraints Energy Method declaration.
 
file  ConstraintsEnergyCreator.hh
 Declaration for the class that connects ConstraintsEnergy with the ScoringManager.
 
file  ConstraintSet.cc
 
file  ConstraintSet.fwd.hh
 
file  ConstraintSet.hh
 
file  CoordinateConstraint.cc
 
file  CoordinateConstraint.hh
 
file  CstMinimizationData.hh
 A cacheable data wrapper for ConstraintsOPs for use in minimization.
 
file  DihedralConstraint.cc
 
file  DihedralConstraint.fwd.hh
 
file  DihedralConstraint.hh
 
file  DihedralPairConstraint.cc
 Restrain a pair of residues to take the same torsion angles.
 
file  DihedralPairConstraint.hh
 Restrain a pair of residues to take the same torsion angles.
 
file  DistancePairConstraint.cc
 Restrain a pair of residues to take the same AtomPair constraint of another pair.
 
file  DistancePairConstraint.hh
 Restrain a pair of residues to take the same torsion angles.
 
file  DOF_Constraint.fwd.hh
 
file  DOF_Constraint.hh
 
file  FabConstraint.cc
 This class is specific to antibodies and penalizes presence of non-cdr residues.
 
file  FabConstraint.fwd.hh
 This class is specific to antibodies and penalizes presence of residues flanking.
 
file  FabConstraint.hh
 This class is specific to antibodies and penalizes presence of residues flanking.
 
file  KofNConstraint.cc
 meta constraint where N constraints declared
 
file  KofNConstraint.fwd.hh
 meta constraint where N constraints declared
 
file  KofNConstraint.hh
 meta constraint where N constraints declared
 
file  LocalCoordinateConstraint.cc
 
file  LocalCoordinateConstraint.hh
 
file  MultiConstraint.cc
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  MultiConstraint.fwd.hh
 
file  MultiConstraint.hh
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  NamedAtomPairConstraint.cc
 
file  NamedAtomPairConstraint.fwd.hh
 
file  NamedAtomPairConstraint.hh
 
file  NonResidueTypeConstraint.cc
 
file  NonResidueTypeConstraint.fwd.hh
 
file  NonResidueTypeConstraint.hh
 implements favor_non_native_residue constraints, assigning an energy bonus to a residue if it matches the identity within the constraint object
 
file  ResidueTypeConstraint.cc
 
file  ResidueTypeConstraint.fwd.hh
 
file  ResidueTypeConstraint.hh
 implements favor_native_residue constraints, assigning an energy bonus to a residue if it matches the identity within the constraint object
 
file  ResidueTypeLinkingConstraint.cc
 
file  ResidueTypeLinkingConstraint.fwd.hh
 constrainting two residues to be the same type, based on
 
file  ResidueTypeLinkingConstraint.hh
 implements favor_native_residue constraints, assigning an energy bonus to a residue if it matches the identity within the constraint object
 
file  SequenceProfileConstraint.cc
 This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.
 
file  SequenceProfileConstraint.fwd.hh
 
file  SequenceProfileConstraint.hh
 This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design).
 
file  SequenceProfileConstraintCreator.hh
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  SiteConstraint.cc
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraint.fwd.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraint.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.cc
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.fwd.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  util.cc
 utility functions for defining and using constraints.
 
file  util.hh
 Utility functions for defining and using constraints.