Rosetta Core  2014.35
scoring Directory Reference
Directory dependency graph for scoring:
src/core/scoring

Directories

directory  carbon_hbonds
 
directory  constraints
 
directory  cryst
 
directory  custom_pair_distance
 
directory  disulfides
 
directory  dna
 
directory  dssp
 
directory  elec
 
directory  electron_density
 
directory  electron_density_atomwise
 
directory  etable
 
directory  facts
 
directory  func
 
directory  geometric_solvation
 
directory  hackaro
 
directory  hbonds
 
directory  interface_
 
directory  loop_graph
 
directory  memb_etable
 
directory  membrane
 
directory  methods
 
directory  mm
 
directory  nv
 
directory  orbitals
 
directory  packing
 
directory  packstat
 
directory  rna
 
directory  sasa
 
directory  saxs
 
directory  sc
 
directory  solid_surface
 
directory  sym_e
 
directory  symmetry
 
directory  trie
 
directory  vdwaals
 

Files

file  APBSWrapper.cc
 APBSWrapper class definition.
 
file  APBSWrapper.fwd.hh
 APBSWrapper forward delcaration.
 
file  APBSWrapper.hh
 APBSWrapper class declaration.
 
file  AtomVDW.cc
 
file  AtomVDW.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  AtomVDW.hh
 Statistically derived rotamer pair potential class declaration.
 
file  CenHBPotential.cc
 Smooth, differentiable version of centroid hbond term.
 
file  CenHBPotential.fwd.hh
 Smooth, differentiable version of centroid hbond term.
 
file  CenHBPotential.hh
 Smooth, differentiable version of centroid hbond term.
 
file  CenRotEnvPairPotential.cc
 CenRot version of cen pair/env.
 
file  CenRotEnvPairPotential.fwd.hh
 CenRot version of cen pair.
 
file  CenRotEnvPairPotential.hh
 CenRot version of cen pair.
 
file  ChemicalShiftAnisotropy.cc
 Uses NMR CSA for scoring (Bertram R et al J of Magn Reson 147, 9-16)
 
file  ChemicalShiftAnisotropy.fwd.hh
 
file  ChemicalShiftAnisotropy.hh
 Uses NMR CSA for scoring.
 
file  constants.hh
 core::scoring package constants
 
file  ContextGraph.cc
 Context graph class.
 
file  ContextGraph.fwd.hh
 Context graph class forward declaration.
 
file  ContextGraph.hh
 Context graph class declaration.
 
file  ContextGraphFactory.cc
 Context graph class factory implementation.
 
file  ContextGraphFactory.fwd.hh
 Context graph class factory forward declaration.
 
file  ContextGraphFactory.hh
 Context graph factory class declaration.
 
file  ContextGraphTypes.hh
 Context graph type enumeration.
 
file  DenseEnergyContainer.fwd.hh
 A container interface for storing and scoring long range energies.
 
file  DenseEnergyContainer.hh
 A container interface for storing and scoring long range energies.
 
file  DerivVectorPair.fwd.hh
 Class for storing a pair of derivative vectors, f1 and f2, used in our internal-geometry minimization algorithm.
 
file  DerivVectorPair.hh
 Class for storing a pair of derivative vectors, f1 and f2, used in our internal-geometry minimization algorithm.
 
file  DipolarCoupling.cc
 Uses NMR DC for scoring (Bertram R et al J of Magn Reson 147, 9-16)
 
file  DipolarCoupling.fwd.hh
 
file  DipolarCoupling.hh
 Uses NMR DC for scoring.
 
file  DockingScoreFunction.cc
 ScoreFunction class definition.
 
file  DockingScoreFunction.fwd.hh
 core::scoring::DockingScoreFunction forward declarations
 
file  DockingScoreFunction.hh
 Symmetric Score function class.
 
file  Energies.cc
 Energies class to store cached energies and track the residue neighbor relationships.
 
file  Energies.fwd.hh
 Energies forward declarations header.
 
file  Energies.hh
 Energies class.
 
file  EnergiesCacheableDataType.hh
 enum for the DataCache within the Energies class
 
file  EnergyGraph.cc
 Energy graph class implementation.
 
file  EnergyGraph.fwd.hh
 Energy graph class forward declaration.
 
file  EnergyGraph.hh
 Energy graph class declaration.
 
file  EnergyMap.cc
 Vector of scores implementation.
 
file  EnergyMap.fwd.hh
 Vector of scores forward declaration.
 
file  EnergyMap.hh
 Vector of scores declaration.
 
file  EnvPairPotential.cc
 Statistically derived rotamer pair potential class implementation.
 
file  EnvPairPotential.fwd.hh
 Statistically derived rotamer pair potential class implementation.
 
file  EnvPairPotential.hh
 Statistically derived rotamer pair potential class implementation.
 
file  GenBornPotential.cc
 
file  GenBornPotential.fwd.hh
 
file  GenBornPotential.hh
 
file  interpolation_util.hh
 Useful function for interpolation...
 
file  LREnergyContainer.cc
 A container interface for storing and scoring long range energies.
 
file  LREnergyContainer.fwd.hh
 A container for storing and scoring long range energies forward declaration.
 
file  LREnergyContainer.hh
 A container interface for storing and scoring long range energies.
 
file  Membrane_FAPotential.cc
 Membrane FA Potential - Class for Fullatom Membrane Scoring Methods.
 
file  Membrane_FAPotential.fwd.hh
 Membrane FA Potential - Class for Fullatom Membrane Scoring Methods.
 
file  Membrane_FAPotential.hh
 Membrane FA Potential - Class for Fullatom Membrane Scoring Methods.
 
file  MembranePotential.cc
 Membrane Potential - Base Scoring Methods for LowRes Energy Function.
 
file  MembranePotential.fwd.hh
 Membrane Potential - Base Scoring Methods for LowRes Energy Function.
 
file  MembranePotential.hh
 Membrane Potential - Base Scoring Methods for LowRes Energy Function.
 
file  MembraneTopology.cc
 MembraneTopology.
 
file  MembraneTopology.fwd.hh
 Membrane Topology.
 
file  MembraneTopology.hh
 MembraneTopology.
 
file  MinimizationData.cc
 A container class for use by certain EnergyMethods during derivative and.
 
file  MinimizationData.fwd.hh
 Forward declaration of the container class for use by certain EnergyMethods.
 
file  MinimizationData.hh
 A container class for use by certain EnergyMethods during derivative and.
 
file  MinimizationGraph.cc
 Minimization graph class implementation.
 
file  MinimizationGraph.fwd.hh
 Minimization graph class forward declaration.
 
file  MinimizationGraph.hh
 Minimization graph class declaration.
 
file  MinScoreScoreFunction.cc
 ScoreFunction class definition. A easy way to deal with the low-res score function problem in replica docking.
 
file  MinScoreScoreFunction.fwd.hh
 core::scoring::MinScoreScoreFunction forward declarations
 
file  MinScoreScoreFunction.hh
 Symmetric Score function class.
 
file  NeighborList.cc
 
file  NeighborList.fwd.hh
 Foward declaration of NeighborList class and owning pointer typedefs.
 
file  NeighborList.hh
 
file  NeighborList.tmpl.hh
 
file  OmegaTether.cc
 OmegaTether potential class implementation.
 
file  OmegaTether.fwd.hh
 Omega Tether potential class forward delcaration.
 
file  OmegaTether.hh
 OmegaTether potential class delcaration.
 
file  OneToAllEnergyContainer.fwd.hh
 A container interface for storing and scoring long range energies.
 
file  OneToAllEnergyContainer.hh
 A container interface for storing and scoring long range energies.
 
file  P_AA.cc
 Amino acid probability arrays and functions.
 
file  P_AA.fwd.hh
 Amino acid probability arrays and functions.
 
file  P_AA.hh
 Amino acid probability arrays and functions.
 
file  PairEPotential.cc
 pairE knowledge-based potential class
 
file  PairEPotential.fwd.hh
 pairE knowledge-based potential class forward delcaration
 
file  PairEPotential.hh
 pairE knowledge-based potential class delcaration
 
file  PeptideBondedEnergyContainer.fwd.hh
 A container interface long range energies for n->n+1 interactions only.
 
file  PeptideBondedEnergyContainer.hh
 A container interface long range energies for n->n+1 interactions only.
 
file  PoissonBoltzmannPotential.cc
 PoissonBoltzmann potential class implementation.
 
file  PoissonBoltzmannPotential.fwd.hh
 PoissonBoltzmann potential class forward delcaration.
 
file  PoissonBoltzmannPotential.hh
 Poisson Boltzmann potential class delcaration.
 
file  ProQPotential.cc
 Membrane Potential.
 
file  ProQPotential.fwd.hh
 Membrane Potential.
 
file  ProQPotential.hh
 ProQembrane Potential.
 
file  ProteinTorsion.hh
 Ramachandran potential class delcaration.
 
file  Rama2BOffset.cc
 
file  Rama2BOffset.fwd.hh
 
file  Rama2BOffset.hh
 Rama2BOffset potential class delcaration.
 
file  Ramachandran.cc
 Ramachandran potential class implementation.
 
file  Ramachandran.fwd.hh
 Ramachandran potential class forward delcaration.
 
file  Ramachandran.hh
 Ramachandran potential class delcaration.
 
file  Ramachandran2B.cc
 Neighbor-dependent Ramachandran potential class implementation.
 
file  Ramachandran2B.fwd.hh
 Ramachandran potential class forward delcaration.
 
file  Ramachandran2B.hh
 Neighbor-dependent Ramachandran potential class delcaration.
 
file  ResidualDipolarCoupling.cc
 Uses NMR RDC for scoring.
 
file  ResidualDipolarCoupling.fwd.hh
 
file  ResidualDipolarCoupling.hh
 Uses NMR RDC for scoring.
 
file  ResidualDipolarCoupling_Rohl.cc
 Uses NMR RDC for scoring.
 
file  ResidualDipolarCoupling_Rohl.fwd.hh
 
file  ResidualDipolarCoupling_Rohl.hh
 Uses NMR RDC for scoring.
 
file  ResidueNeighborList.cc
 A container class for use by the Etable and FA_Elec classes for storing lists of atom neighbors.
 
file  ResidueNeighborList.fwd.hh
 Forward declaration of a container class for use by the Etable and FA_Elec classes for storing residue-pair level atom-neighbor information.
 
file  ResidueNeighborList.hh
 A container class for use by the Etable and FA_Elec classes for storing lists of atom neighbors.
 
file  rms_util.cc
 RMS stuff from rosetta++.
 
file  rms_util.hh
 RMS stuff from rosetta++.
 
file  rms_util.tmpl.hh
 RMS stuff from rosetta++ that requires templates.
 
file  RsdEnergiesBreakdown.cc
 Residue Energies Breakdown.
 
file  RsdEnergiesBreakdown.fwd.hh
 Residue Energies Breakdown.
 
file  RsdEnergiesBreakdown.hh
 Residue Energies Breakdown.
 
file  sasa.cc
 routines which calculate solvent accessible surface area
 
file  sasa.hh
 routines which calculate solvent accessible surface area
 
file  ScoreFunction.cc
 ScoreFunction class definition.
 
file  ScoreFunction.fwd.hh
 core::scoring::ScoreFunction forward declarations
 
file  ScoreFunction.hh
 Score function class.
 
file  ScoreFunctionFactory.cc
 
file  ScoreFunctionFactory.hh
 
file  ScoreFunctionInfo.cc
 Score function class descriptor.
 
file  ScoreFunctionInfo.fwd.hh
 Score function class.
 
file  ScoreFunctionInfo.hh
 Score function class.
 
file  ScoreFunctionParameter.hh
 
file  ScoreFunctionVariant.hh
 
file  ScoreType.cc
 
file  ScoreType.hh
 Score type enumeration.
 
file  ScoreTypeManager.cc
 
file  ScoreTypeManager.hh
 Score type enumeration.
 
file  ScoringManager.cc
 Scoring manager class.
 
file  ScoringManager.fwd.hh
 Scoring manager class header.
 
file  ScoringManager.hh
 Scoring manager class header.
 
file  SecondaryStructurePotential.cc
 Scoring manager class header.
 
file  SecondaryStructurePotential.fwd.hh
 Scoring manager class header.
 
file  SecondaryStructurePotential.hh
 Scoring manager class header.
 
file  SecondaryStructureWeights.cc
 Scoring manager class header.
 
file  SecondaryStructureWeights.hh
 Scoring manager class header.
 
file  SmoothEnvPairPotential.cc
 Smooth, differentiable version of centroid env and pair terms.
 
file  SmoothEnvPairPotential.fwd.hh
 Smooth, differentiable version of centroid env and pair terms.
 
file  SmoothEnvPairPotential.hh
 Smooth, differentiable version of centroid env and pair terms.
 
file  SS_Info.cc
 Scoring manager class header.
 
file  SS_Info.fwd.hh
 Data cache forward declarations for the secondary-structure based scores.
 
file  SS_Info.hh
 Scoring manager class header.
 
file  SS_Killhairpins_Info.cc
 Scoring manager class header.
 
file  SS_Killhairpins_Info.fwd.hh
 Scoring manager class header.
 
file  SS_Killhairpins_Info.hh
 Scoring manager class header.
 
file  TenANeighborGraph.cc
 Neighbor graph to represent for each residue the number of other residues within 10 Angstroms.
 
file  TenANeighborGraph.fwd.hh
 Ten Angstrom Neighbor graph class forward declaration.
 
file  TenANeighborGraph.hh
 Ten Angstrom Neighbor Graph class declaration.
 
file  TMscore.cc
 reimplementation of TMscore sequence-based structure superposition
 
file  TMscore.hh
 reimplementation of TMscore sequence-based structure superposition
 
file  TwelveANeighborGraph.cc
 Neighbor graph to represent for each residue the number of other residues within 12 Angstroms.
 
file  TwelveANeighborGraph.fwd.hh
 Twelve Angstrom Neighbor graph class forward declaration.
 
file  TwelveANeighborGraph.hh
 Twelve Angstrom Neighbor Graph class declaration.
 
file  types.hh
 core::scoring package type declarations
 
file  UnfoldedStatePotential.cc
 Unfolded state energies based on energies of residues in fragments, definition file.
 
file  UnfoldedStatePotential.fwd.hh
 Unfolded state energies based on energies of residues in fragments, forward declaration.
 
file  UnfoldedStatePotential.hh
 Unfolded state energies based on energies of residues in fragments, declaration (header) file.
 
file  util.cc
 Nonmember functions for evaluating some or all energy methods on residues or residue pairs.
 
file  util.hh
 Nonmember functions for evaluating some or all energy methods on residues or residue pairs.
 
file  WaterAdductHBondPotential.cc
 
file  WaterAdductHBondPotential.fwd.hh
 
file  WaterAdductHBondPotential.hh