Rosetta Core  2014.35
rna Directory Reference
Directory dependency graph for rna:
src/core/scoring/rna

Directories

directory  chemical_shift
 
directory  data
 

Files

file  RG_Energy_RNA.cc
 Radius of gyration energy function definition.
 
file  RG_Energy_RNA.hh
 Radius of gyration score for RNA, to match Rosetta++.
 
file  RG_Energy_RNACreator.hh
 Declaration for the class that connects RG_Energy_RNA with the ScoringManager.
 
file  RNA_AtomVDW.cc
 
file  RNA_AtomVDW.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_AtomVDW.hh
 Information on which atoms to use for computing clashes.
 
file  RNA_BaseBaseEnergy.cc
 Statistically derived base-base energy.
 
file  RNA_BaseBaseEnergy.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_BaseBaseEnergy.hh
 Statistically derived base-base energy.
 
file  RNA_BulgeEnergy.cc
 RNA_Bulge energy method implementation.
 
file  RNA_BulgeEnergy.fwd.hh
 RNA_Bulge energy method forward declaration.
 
file  RNA_BulgeEnergy.hh
 Score function class.
 
file  RNA_BulgeEnergyCreator.hh
 Declaration for the class that connects RNA_BulgeEnergy with the ScoringManager.
 
file  RNA_CentroidInfo.cc
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_CentroidInfo.fwd.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_CentroidInfo.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_FilteredBaseBaseInfo.cc
 Statistically derived RNA potential.
 
file  RNA_FilteredBaseBaseInfo.fwd.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_FilteredBaseBaseInfo.hh
 Statistically derived RNA potential.
 
file  RNA_FullAtomStackingEnergy.cc
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_FullAtomStackingEnergy.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_FullAtomStackingEnergy.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_FullAtomStackingEnergyCreator.hh
 Declaration for the class that connects RNA_FullAtomStackingEnergy with the ScoringManager.
 
file  RNA_FullAtomVDW_BasePhosphate.cc
 RNA_FullAtomVDW_BasePhosphate energy method class implementation.
 
file  RNA_FullAtomVDW_BasePhosphate.fwd.hh
 
file  RNA_FullAtomVDW_BasePhosphate.hh
 FullAtom VDW energy between the base and phosphate group in the same (intra) nucleotide.
 
file  RNA_FullAtomVDW_BasePhosphateCreator.fwd.hh
 
file  RNA_FullAtomVDW_BasePhosphateCreator.hh
 Declaration for the class that connects RNA_FullAtomVDW_BasePhosphate with the ScoringManager.
 
file  RNA_JR_SuiteEnergy.cc
 Jane Richardson style RNA Suite Energy.
 
file  RNA_JR_SuiteEnergy.fwd.hh
 Jane Richardson style RNA Suite Energy.
 
file  RNA_JR_SuiteEnergy.hh
 Jane Richardson style RNA Suite Energy.
 
file  RNA_JR_SuiteEnergyCreator.hh
 Declaration for the class that connects RNA_JR_SuiteEnergy with the ScoringManager.
 
file  RNA_LJ_BaseEnergy.cc
 
file  RNA_LJ_BaseEnergy.fwd.hh
 LJ Aromatic Energy.
 
file  RNA_LJ_BaseEnergy.hh
 van der waals over aromatics
 
file  RNA_LJ_BaseEnergyCreator.hh
 Declaration for the class that connects RNA_LJ_BaseEnergy with the ScoringManager.
 
file  RNA_LowResolutionPotential.cc
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_LowResolutionPotential.fwd.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_LowResolutionPotential.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_Mg_Energy.cc
 Statistically derived Mg(2+) binding potential for RNA.
 
file  RNA_Mg_Energy.hh
 Statistically derived Mg(2+) binding potential for RNA.
 
file  RNA_Mg_EnergyCreator.hh
 Declaration for the class that connects RNA_Mg_Energy with the ScoringManager.
 
file  RNA_Mg_KnowledgeBasedPotential.cc
 
file  RNA_Mg_KnowledgeBasedPotential.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_Mg_KnowledgeBasedPotential.hh
 Information on which atoms to use for computing clashes.
 
file  RNA_PairwiseLowResolutionEnergy.cc
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_PairwiseLowResolutionEnergy.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_PairwiseLowResolutionEnergy.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_PairwiseLowResolutionEnergyCreator.hh
 Declaration for the class that connects RNA_PairwiseLowResolutionEnergy with the ScoringManager.
 
file  RNA_RawBaseBaseInfo.cc
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_RawBaseBaseInfo.fwd.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_RawBaseBaseInfo.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_ScoringInfo.cc
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_ScoringInfo.fwd.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_ScoringInfo.hh
 Statistically derived rotamer pair potential class implementation.
 
file  RNA_ScoringUtil.cc
 
file  RNA_ScoringUtil.hh
 
file  RNA_SugarCloseEnergy.cc
 RNA_SugarClose energy method class implementation.
 
file  RNA_SugarCloseEnergy.fwd.hh
 OmegaTether energy method class forward declaration.
 
file  RNA_SugarCloseEnergy.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_SugarCloseEnergyCreator.hh
 Declaration for the class that connects RNA_SugarCloseEnergy with the ScoringManager.
 
file  RNA_SuiteEnergy.cc
 RNA Suite Energy.
 
file  RNA_SuiteEnergy.fwd.hh
 RNA Suite Energy.
 
file  RNA_SuiteEnergy.hh
 RNA Suite Energy.
 
file  RNA_SuiteEnergyCreator.hh
 Declaration for the class that connects RNA_SuiteEnergy with the ScoringManager.
 
file  RNA_SuitePotential.cc
 RNA_SuitePotential potential class implementation.
 
file  RNA_SuitePotential.fwd.hh
 RNA_SuitePotential potential class forward delcaration.
 
file  RNA_SuitePotential.hh
 RNA_SuitePotential potential class delcaration.
 
file  RNA_Torsion.fwd.hh
 RNA_TorsionPotential potential class forward delcaration.
 
file  RNA_TorsionEnergy.cc
 RNA_Torsion energy method class implementation.
 
file  RNA_TorsionEnergy.fwd.hh
 OmegaTether energy method class forward declaration.
 
file  RNA_TorsionEnergy.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_TorsionEnergyCreator.hh
 Declaration for the class that connects RNA_TorsionEnergy with the ScoringManager.
 
file  RNA_TorsionPotential.cc
 RNA_TorsionPotential potential class implementation.
 
file  RNA_TorsionPotential.fwd.hh
 RNA_TorsionPotential potential class forward delcaration.
 
file  RNA_TorsionPotential.hh
 RNA_TorsionPotential potential class delcaration.
 
file  RNA_VDW_Energy.cc
 Statistically derived clash check for RNA.
 
file  RNA_VDW_Energy.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_VDW_Energy.hh
 Statistically derived rotamer pair potential class declaration.
 
file  RNA_VDW_EnergyCreator.hh
 Declaration for the class that connects RNA_VDW_Energy with the ScoringManager.
 
file  StackElecEnergy.cc
 FA_Elec, but just 'perpendicular' to bases... trying to separate from H-bonds & geom_sol.
 
file  StackElecEnergy.fwd.hh
 Statistically derived rotamer pair potential class declaration.
 
file  StackElecEnergy.hh
 FA_Elec, but just 'perpendicular' to bases... trying to separate from H-bonds & geom_sol.
 
file  StackElecEnergyCreator.hh
 Declaration for the class that connects StackElecEnergy with the ScoringManager.