Rosetta Protocols  2014.35
protocols::LoopRebuild Member List

This is the complete list of members for protocols::LoopRebuild, including all inherited members.

abort_on_failed_loop_protocols::LoopRebuildprivate
acceptable_rmsd_change(core::pose::Pose &pose1, core::pose::Pose &pose2)protocols::LoopRebuildprivate
allowed_failure_before_extend_protocols::LoopRebuildprivate
allowed_failure_before_stopprotocols::LoopRebuild
allowed_failure_before_stop_protocols::LoopRebuildprivate
apply(core::pose::Pose &pose)protocols::LoopRebuildvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
barcode_extend_stems(core::pose::Pose &pose, int &barcst_extend_begin, int &barcst_extend_end, int &loop_begin, int &loop_end, int const &old_loop_begin, int const &old_loop_end, int const &nres, int const &selected_loop, int const &total_combine, int const &backward_combine)protocols::LoopRebuildprivate
build_loop_with_ccd_closure(core::pose::Pose &pose, int const &loop_begin, int const &loop_end, int &cutpoint, bool const &extend_this_loop)protocols::LoopRebuildprivate
build_random_loops(core::pose::Pose &pose)protocols::LoopRebuildprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::LoopRebuildvirtual
create()protocols::moves::Movervirtual
desired_loops()protocols::LoopRebuild
extend_barcode_regions_if_chain_break(core::pose::Pose &pose, int const &loop_begin, int const &loop_end, int &n_chain_break_fail, bool &is_chain_break, int &barcst_extend_begin, int &barcst_extend_end)protocols::LoopRebuildprivate
extend_loopsprotocols::LoopRebuildprivate
extended_loop()protocols::LoopRebuild
fast_ccd_close_loops(core::pose::Pose &pose, int const &loop_begin, int const &loop_end, int const &cutpoint, core::kinematics::MoveMap &mm)protocols::LoopRebuildprivate
Filters_map typedefprotocols::moves::Mover
frag_libs_protocols::LoopRebuildprivate
fresh_instance() const protocols::moves::Movervirtual
get_abort_on_failed_loop()protocols::LoopRebuildinline
get_additional_output()protocols::moves::Movervirtual
get_allowed_failure_before_extend()protocols::LoopRebuildinline
get_allowed_failure_before_stop()protocols::LoopRebuildinline
get_ccd_closure_exist()protocols::LoopRebuild
get_chain_break_tolerance()protocols::LoopRebuild
get_combine_if_fail_exist()protocols::LoopRebuild
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_desired_loops_exist()protocols::LoopRebuild
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_loop_combine_rate()protocols::LoopRebuild
get_looprlx_cycle_ratio()protocols::LoopRebuildprivate
get_mc(core::pose::Pose &pose)protocols::LoopRebuild
get_name() const protocols::LoopRebuildvirtual
get_native_pose() const protocols::moves::Mover
get_random_loop_flag()protocols::LoopRebuildinline
get_rmsd_tolerance()protocols::LoopRebuild
get_score_filter_cutoff()protocols::LoopRebuildprivate
get_success()protocols::LoopRebuildinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_model()protocols::LoopRebuild
LoopRebuild(core::scoring::ScoreFunctionOP scorefxn, protocols::loops::Loops Loops_in)protocols::LoopRebuild
Loops_in_protocols::LoopRebuildprivate
m_Temperature_protocols::LoopRebuildprivate
mc_protocols::LoopRebuildprivate
mc_createdprotocols::LoopRebuildprivate
movemap_protocols::LoopRebuildprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
only_remove_missing_density_flag_protocols::LoopRebuildprivate
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
pose_protocols::LoopRebuildprivate
PoseCOP typedefprotocols::moves::Mover
random_loop_flag_protocols::LoopRebuildprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxn_protocols::LoopRebuildprivate
select_one_loop(int nres, int &selected_loop, std::vector< int > &folded_loops, std::vector< int > &inter_res, int &loop_begin, int &loop_end, int &cutpoint, bool &extend_this_loop, bool &are_loops_combined, int &combine_interval, int &loop_counter)protocols::LoopRebuildprivate
set_abort_on_failed_loop(bool setting=true)protocols::LoopRebuildinline
set_allowed_failure_before_extend(int setting)protocols::LoopRebuildinline
set_allowed_failure_before_stop(int setting)protocols::LoopRebuildinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default_mc(core::pose::Pose &pose)protocols::LoopRebuild
set_default_settings()protocols::LoopRebuild
set_extended_loop(bool val)protocols::LoopRebuild
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_looprlx_allow_move_map(int const &loop_begin, int const &loop_end, core::kinematics::MoveMap &mm)protocols::LoopRebuildprivate
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_random_loop_flag(bool setting=true)protocols::LoopRebuildinline
set_type(std::string const &setting)protocols::moves::Moverinline
shorten_long_terminal_loop()protocols::LoopRebuildprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
successprotocols::LoopRebuildprivate
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
use_default_extend_loopsprotocols::LoopRebuildprivate
~LoopRebuild()protocols::LoopRebuild
~Mover()protocols::moves::Movervirtual