Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::features::RotamerRecoveryFeatures Class Reference

#include <RotamerRecoveryFeatures.hh>

Public Member Functions

 RotamerRecoveryFeatures ()
 
 RotamerRecoveryFeatures (core::scoring::ScoreFunctionOP scfxn)
 
 RotamerRecoveryFeatures (RotamerRecoveryFeatures const &src)
 
virtual ~RotamerRecoveryFeatures ()
 
std::string type_name () const
 return string with class name More...
 
utility::vector1< std::stringfeatures_reporter_dependencies () const
 return the set of features reporters that are required to also already be extracted by the time this one is used. More...
 
void initialize_task_factory (core::pack::task::TaskFactoryOP task_factory)
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &movers, core::pose::Pose const &)
 
void write_schema_to_db (utility::sql_database::sessionOP db_session) const
 generate the table schemas and write them to the database More...
 
core::Size report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session)
 collect all the feature data for the pose More...
 
- Public Member Functions inherited from protocols::features::FeaturesReporter
 FeaturesReporter ()
 
virtual ~FeaturesReporter ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
virtual std::string schema () const
 return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
 
core::Size report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
 collect all the feature data for the pose. More...
 
virtual void load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)
 
virtual void delete_record (StructureID, utility::sql_database::sessionOP)
 
void set_relevant_residues_mode (RelevantResiduesMode::T setting)
 
RelevantResiduesMode::T get_relevant_residues_mode () const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const
 

Private Attributes

core::scoring::ScoreFunctionOP scfxn_
 
protocols::rotamer_recovery::RRReporterSQLiteOP reporter_
 
protocols::rotamer_recovery::RRProtocolOP protocol_
 
protocols::rotamer_recovery::RRComparerOP comparer_
 
core::pack::task::TaskFactoryOP task_factory_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string find_tag (core::pose::Pose const &pose) const
 
void delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
 a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
 
- Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T relevant_residues_mode_
 

Constructor & Destructor Documentation

protocols::features::RotamerRecoveryFeatures::RotamerRecoveryFeatures ( )
protocols::features::RotamerRecoveryFeatures::RotamerRecoveryFeatures ( core::scoring::ScoreFunctionOP  scfxn)
protocols::features::RotamerRecoveryFeatures::RotamerRecoveryFeatures ( RotamerRecoveryFeatures const &  src)
protocols::features::RotamerRecoveryFeatures::~RotamerRecoveryFeatures ( )
virtual

Member Function Documentation

vector1< string > protocols::features::RotamerRecoveryFeatures::features_reporter_dependencies ( ) const
virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::RotamerRecoveryFeatures::initialize_task_factory ( core::pack::task::TaskFactoryOP  task_factory)

References task_factory_.

void protocols::features::RotamerRecoveryFeatures::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap data,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  movers,
core::pose::Pose const &   
)
virtual
Size protocols::features::RotamerRecoveryFeatures::report_features ( core::pose::Pose const &  pose,
utility::vector1< bool > const &  relevant_residues,
StructureID  struct_id,
utility::sql_database::sessionOP  db_session 
)
virtual
string protocols::features::RotamerRecoveryFeatures::type_name ( ) const
virtual

return string with class name

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::RotamerRecoveryFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const
virtual

generate the table schemas and write them to the database

Implements protocols::features::FeaturesReporter.

References reporter_.

Member Data Documentation

protocols::rotamer_recovery::RRComparerOP protocols::features::RotamerRecoveryFeatures::comparer_
private

Referenced by parse_my_tag(), and report_features().

protocols::rotamer_recovery::RRProtocolOP protocols::features::RotamerRecoveryFeatures::protocol_
private

Referenced by parse_my_tag(), and report_features().

protocols::rotamer_recovery::RRReporterSQLiteOP protocols::features::RotamerRecoveryFeatures::reporter_
private
core::scoring::ScoreFunctionOP protocols::features::RotamerRecoveryFeatures::scfxn_
private

Referenced by parse_my_tag(), and report_features().

core::pack::task::TaskFactoryOP protocols::features::RotamerRecoveryFeatures::task_factory_
private

The documentation for this class was generated from the following files: