| apply(core::pose::Pose const &pose) const | protocols::protein_interface_design::filters::RmsdSimpleFilter | virtual |
| protocols::filters::Filter::apply(core::io::serialization::PipeMap &pmap) | protocols::filters::Filter | virtual |
| b_target_chain_ | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| clear() | protocols::filters::Filter | inlinevirtual |
| clone() const | protocols::protein_interface_design::filters::RmsdSimpleFilter | virtual |
| compute(core::pose::Pose const &pose) const | protocols::protein_interface_design::filters::RmsdSimpleFilter | |
| dist_bb(core::pose::Pose const &poseA, utility::vector1< core::Size > const &positions_to_alignA, core::pose::Pose const &poseB, utility::vector1< core::Size > const &positions_to_alignB) const | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| do_align_ | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| Filter() | protocols::filters::Filter | |
| Filter(std::string const &) | protocols::filters::Filter | |
| Filter(Filter const &) | protocols::filters::Filter | |
| fresh_instance() const | protocols::protein_interface_design::filters::RmsdSimpleFilter | virtual |
| get_type() const | protocols::filters::Filter | inlinevirtual |
| get_user_defined_name() const | protocols::filters::Filter | inline |
| name() const | protocols::filters::Filter | inlinevirtual |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks) | protocols::filters::Filter | virtual |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data_map, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &reference_pose) | protocols::protein_interface_design::filters::RmsdSimpleFilter | virtual |
| reference_pose_ | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| report(std::ostream &out, core::pose::Pose const &pose) const | protocols::protein_interface_design::filters::RmsdSimpleFilter | virtual |
| report_sm(core::pose::Pose const &pose) const | protocols::protein_interface_design::filters::RmsdSimpleFilter | virtual |
| rmsd_bb(core::pose::Pose const &poseA, utility::vector1< core::Size > const &positions_to_alignA, core::pose::Pose const &poseB, utility::vector1< core::Size > const &positions_to_alignB) const | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| RmsdSimpleFilter() | protocols::protein_interface_design::filters::RmsdSimpleFilter | |
| RmsdSimpleFilter(core::Real const threshold, core::pose::PoseOP reference_pose) | protocols::protein_interface_design::filters::RmsdSimpleFilter | |
| score(core::io::serialization::PipeMap &pmap) | protocols::filters::Filter | virtual |
| score(core::pose::Pose &pose) | protocols::filters::Filter | virtual |
| scorename_ | protocols::filters::Filter | protected |
| set_user_defined_name(std::string const &name) | protocols::filters::Filter | inline |
| superposition_transform(core::Size natoms, ObjexxFCL::FArray1_double const &weights, ObjexxFCL::FArray2_double &ref_coords, ObjexxFCL::FArray2_double &coords, numeric::xyzMatrix< core::Real > &RotM, numeric::xyzVector< core::Real > &TvecA, numeric::xyzVector< core::Real > &TvecB) const | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| target_chain_ | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| threshold_ | protocols::protein_interface_design::filters::RmsdSimpleFilter | private |
| ~Filter() | protocols::filters::Filter | virtual |
| ~RmsdSimpleFilter() | protocols::protein_interface_design::filters::RmsdSimpleFilter | virtual |
1.8.7